Wall clock time and date at job start Tue Mar 31 2020 23:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47588 * 2 1 4 4 C 1.46501 * 119.99806 * 270.00371 * 3 2 1 5 5 C 1.50703 * 109.47000 * 269.99747 * 4 3 2 6 6 H 1.08006 * 119.99612 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47199 * 89.99973 * 9 7 5 11 11 H 1.48494 * 109.46972 * 210.00115 * 9 7 5 12 12 H 1.48503 * 109.46924 * 329.99992 * 9 7 5 13 13 C 1.34771 * 120.00399 * 89.99421 * 3 2 1 14 14 O 1.21592 * 120.00019 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99794 * 0.02562 * 13 3 2 16 16 C 1.40199 * 119.99932 * 184.61161 * 15 13 3 17 17 C 1.38837 * 119.99240 * 324.67959 * 16 15 13 18 18 C 1.38075 * 120.00310 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.99524 * 359.97438 * 18 17 16 20 20 N 1.39919 * 120.00901 * 179.97438 * 19 18 17 21 21 S 1.65602 * 119.99751 * 74.16082 * 20 19 18 22 22 C 1.81399 * 104.45134 * 63.54575 * 21 20 19 23 23 O 1.42098 * 104.27981 * 307.47276 * 21 20 19 24 24 O 1.42101 * 104.27695 * 179.61980 * 21 20 19 25 25 C 1.38882 * 119.99204 * 0.24977 * 19 18 17 26 26 C 1.38076 * 119.99016 * 359.53932 * 25 19 18 27 27 H 1.08994 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46812 * 300.00234 * 1 2 3 29 29 H 1.09000 * 109.46640 * 59.99798 * 1 2 3 30 30 H 1.09000 * 109.46928 * 239.99224 * 2 1 3 31 31 H 1.09004 * 109.46852 * 119.99738 * 2 1 3 32 32 H 1.09007 * 109.47030 * 29.99277 * 4 3 2 33 33 H 1.08991 * 109.47362 * 149.99459 * 4 3 2 34 34 H 0.97004 * 120.00397 * 179.97438 * 8 7 5 35 35 H 0.97005 * 120.00193 * 4.60727 * 15 13 3 36 36 H 1.07997 * 120.00283 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.00595 * 179.97438 * 18 17 16 38 38 H 0.96992 * 120.00104 * 254.17080 * 20 19 18 39 39 H 1.09002 * 109.46811 * 54.97662 * 22 21 20 40 40 H 1.09000 * 109.47433 * 174.97908 * 22 21 20 41 41 H 1.09005 * 109.46750 * 294.97869 * 22 21 20 42 42 H 1.07997 * 120.00699 * 179.73068 * 25 19 18 43 43 H 1.08006 * 119.99343 * 180.19227 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2306 -1.0958 7 6 4.1492 2.3893 -2.8781 8 7 3.3490 3.1246 -3.6187 9 14 5.9136 2.0963 -3.4170 10 1 5.9776 0.8748 -4.2591 11 1 6.3922 3.2634 -4.2004 12 1 6.7737 1.9176 -2.2196 13 6 2.2431 2.0165 1.1671 14 8 2.6480 3.1630 1.1670 15 7 2.0188 1.3811 2.3343 16 6 2.1592 2.0714 3.5465 17 6 3.1435 3.0410 3.6830 18 6 3.2824 3.7206 4.8769 19 6 2.4370 3.4346 5.9410 20 7 2.5778 4.1227 7.1511 21 16 2.0749 5.6958 7.2724 22 6 0.2827 5.6202 7.0020 23 8 2.7155 6.3532 6.1878 24 8 2.3616 6.0526 8.6177 25 6 1.4555 2.4614 5.8057 26 6 1.3142 1.7851 4.6102 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0957 3.1409 -1.1385 34 1 3.6750 3.5150 -4.4446 35 1 1.7601 0.4462 2.3357 36 1 3.8006 3.2637 2.8554 37 1 4.0483 4.4745 4.9833 38 1 2.9701 3.6783 7.9189 39 1 -0.1618 4.9179 7.7072 40 1 -0.1496 6.6094 7.1530 41 1 0.0827 5.2878 5.9833 42 1 0.8008 2.2357 6.6345 43 1 0.5489 1.0304 4.5040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078613155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:13 Heat of formation + Delta-G solvation = -57.680888 kcal Electronic energy + Delta-G solvation = -27431.854584 eV Core-core repulsion = 23412.051866 eV Total energy + Delta-G solvation = -4019.802719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41163 -38.93641 -37.29621 -36.20102 -35.95967 -35.17576 -33.46756 -32.59438 -30.98695 -30.20652 -29.74088 -28.38831 -26.66570 -23.37774 -23.12559 -22.87993 -21.80232 -19.76661 -19.40737 -18.16998 -17.89024 -17.76679 -16.95811 -16.50290 -16.39524 -15.59935 -15.34430 -15.11803 -14.52468 -14.14522 -14.13981 -13.81815 -13.67225 -13.46606 -13.40244 -13.37716 -13.09887 -12.63348 -12.49539 -12.33341 -12.22098 -12.12341 -11.99656 -11.77997 -11.70811 -11.26398 -11.24223 -10.97398 -10.84645 -10.56708 -10.21918 -10.11737 -9.97562 -9.67929 -9.32706 -8.91704 -8.45277 -8.05367 -7.65898 -6.06071 -4.10941 -0.04120 1.20751 1.38644 2.40905 3.09423 3.29280 3.36759 3.41188 3.50333 3.55883 3.93302 3.97681 4.30222 4.45767 4.46813 4.70734 4.84984 4.91201 5.09588 5.17666 5.28222 5.35635 5.38185 5.46967 5.52046 5.60508 5.68020 5.89353 5.99976 6.12813 6.20490 6.35363 6.37892 6.41853 6.65898 6.77394 6.81950 7.17227 7.31013 7.45778 7.61094 7.91285 8.20351 8.50840 8.89424 9.16727 9.54599 11.01839 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.002632 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.944420 B =10634.491320 C =11662.237123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.697 3.303 14 O -0.565 6.565 15 N -0.698 5.698 16 C 0.192 3.808 17 C -0.113 4.113 18 C -0.080 4.080 19 C 0.083 3.917 20 N -1.060 6.060 21 S 2.609 3.391 22 C -0.670 4.670 23 O -0.944 6.944 24 O -0.963 6.963 25 C -0.098 4.098 26 C -0.153 4.153 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.420 0.580 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -5.044 21.186 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.141 3.859 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.399 3.601 14 O -0.441 6.441 15 N -0.347 5.347 16 C 0.095 3.905 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.012 4.012 20 N -0.815 5.815 21 S 2.702 3.298 22 C -0.820 4.820 23 O -0.934 6.934 24 O -0.953 6.953 25 C -0.120 4.120 26 C -0.175 4.175 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.258 0.742 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.133 -3.231 20.905 22.662 hybrid contribution 0.265 -1.293 -0.243 1.342 sum -7.868 -4.525 20.661 22.567 Atomic orbital electron populations 1.22246 0.96632 1.01471 1.02577 1.21378 0.93608 0.84311 1.02460 1.47638 1.66841 1.13285 1.06242 1.19248 0.96269 0.93536 0.76827 1.21440 0.96953 1.32028 1.06246 0.92472 1.24921 0.97854 0.94872 0.96387 1.69923 1.35715 1.33365 1.14315 0.86497 0.84674 0.77647 0.78587 1.20707 1.21074 1.19890 1.15954 0.79240 0.84821 0.80082 1.90912 1.51062 1.16681 1.85399 1.43122 1.73663 1.14221 1.03713 1.17748 0.93535 0.94157 0.85072 1.21484 0.97753 0.96295 0.97929 1.21481 0.97775 0.98735 0.92108 1.17193 0.99093 0.98803 0.86117 1.53104 1.77259 1.33259 1.17833 1.05075 0.77717 0.72892 0.74132 1.30474 1.27503 1.11490 1.12512 1.93660 1.71558 1.72343 1.55846 1.93612 1.83891 1.81328 1.36486 1.21029 0.97659 0.95990 0.97311 1.20743 0.99915 1.03564 0.93228 0.92084 0.93084 0.91780 0.89446 0.92478 0.94777 0.93668 0.92677 0.76036 0.83002 0.84564 0.74235 0.85351 0.85326 0.84940 0.85441 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.61 -12.16 2.46 -180.80 -0.44 -12.61 16 4 C 0.26 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.70 14.05 8.12 -86.92 -0.71 13.34 16 14 O -0.56 -13.83 13.37 5.29 0.07 -13.75 16 15 N -0.70 -10.34 5.22 -14.18 -0.07 -10.41 16 16 C 0.19 2.69 6.30 -83.59 -0.53 2.17 16 17 C -0.11 -1.78 8.69 -39.42 -0.34 -2.12 16 18 C -0.08 -1.07 9.20 -39.40 -0.36 -1.44 16 19 C 0.08 0.87 5.72 -83.69 -0.48 0.39 16 20 N -1.06 -8.69 5.61 32.45 0.18 -8.51 16 21 S 2.61 23.88 6.07 -107.50 -0.65 23.23 16 22 C -0.67 -4.01 10.81 101.05 1.09 -2.91 16 23 O -0.94 -12.88 16.85 -57.54 -0.97 -13.85 16 24 O -0.96 -11.18 18.08 -57.54 -1.04 -12.23 16 25 C -0.10 -0.88 9.96 -39.40 -0.39 -1.27 16 26 C -0.15 -1.57 9.96 -39.42 -0.39 -1.96 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.34 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.66 6.30 -51.93 -0.33 0.34 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.40 4.61 6.52 -40.82 -0.27 4.35 16 36 H 0.15 2.86 6.23 -52.49 -0.33 2.53 16 37 H 0.14 1.85 7.73 -52.49 -0.41 1.45 16 38 H 0.42 2.53 8.92 -34.47 -0.31 2.22 16 39 H 0.13 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -37.62 377.09 -9.51 -47.13 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.78 Total: 4.85 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.20 Total: -0.69 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.40 Total: -56.99 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.94 Total: -39.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 23.88 SS G_CDS: -0.65 Total: 23.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.62 -9.51 -47.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078613155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.547 kcal (2) G-P(sol) polarization free energy of solvation -37.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds