Wall clock time and date at job start Tue Mar 31 2020 23:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47588 * 2 1 4 4 C 1.46501 * 119.99806 * 270.00371 * 3 2 1 5 5 C 1.50703 * 109.47000 * 269.99747 * 4 3 2 6 6 H 1.08006 * 119.99612 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47199 * 89.99973 * 9 7 5 11 11 H 1.48494 * 109.46972 * 210.00115 * 9 7 5 12 12 H 1.48503 * 109.46924 * 329.99992 * 9 7 5 13 13 C 1.34771 * 120.00399 * 89.99421 * 3 2 1 14 14 O 1.21592 * 120.00019 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99794 * 0.02562 * 13 3 2 16 16 C 1.40199 * 119.99932 * 184.61161 * 15 13 3 17 17 C 1.38837 * 119.99240 * 324.67959 * 16 15 13 18 18 C 1.38075 * 120.00310 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.99524 * 359.97438 * 18 17 16 20 20 N 1.39919 * 120.00901 * 179.97438 * 19 18 17 21 21 S 1.65602 * 119.99751 * 74.16082 * 20 19 18 22 22 C 1.81399 * 104.45134 * 63.54575 * 21 20 19 23 23 O 1.42098 * 104.27981 * 307.47276 * 21 20 19 24 24 O 1.42101 * 104.27695 * 179.61980 * 21 20 19 25 25 C 1.38882 * 119.99204 * 0.24977 * 19 18 17 26 26 C 1.38076 * 119.99016 * 359.53932 * 25 19 18 27 27 H 1.08994 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46812 * 300.00234 * 1 2 3 29 29 H 1.09000 * 109.46640 * 59.99798 * 1 2 3 30 30 H 1.09000 * 109.46928 * 239.99224 * 2 1 3 31 31 H 1.09004 * 109.46852 * 119.99738 * 2 1 3 32 32 H 1.09007 * 109.47030 * 29.99277 * 4 3 2 33 33 H 1.08991 * 109.47362 * 149.99459 * 4 3 2 34 34 H 0.97004 * 120.00397 * 179.97438 * 8 7 5 35 35 H 0.97005 * 120.00193 * 4.60727 * 15 13 3 36 36 H 1.07997 * 120.00283 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.00595 * 179.97438 * 18 17 16 38 38 H 0.96992 * 120.00104 * 254.17080 * 20 19 18 39 39 H 1.09002 * 109.46811 * 54.97662 * 22 21 20 40 40 H 1.09000 * 109.47433 * 174.97908 * 22 21 20 41 41 H 1.09005 * 109.46750 * 294.97869 * 22 21 20 42 42 H 1.07997 * 120.00699 * 179.73068 * 25 19 18 43 43 H 1.08006 * 119.99343 * 180.19227 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2306 -1.0958 7 6 4.1492 2.3893 -2.8781 8 7 3.3490 3.1246 -3.6187 9 14 5.9136 2.0963 -3.4170 10 1 5.9776 0.8748 -4.2591 11 1 6.3922 3.2634 -4.2004 12 1 6.7737 1.9176 -2.2196 13 6 2.2431 2.0165 1.1671 14 8 2.6480 3.1630 1.1670 15 7 2.0188 1.3811 2.3343 16 6 2.1592 2.0714 3.5465 17 6 3.1435 3.0410 3.6830 18 6 3.2824 3.7206 4.8769 19 6 2.4370 3.4346 5.9410 20 7 2.5778 4.1227 7.1511 21 16 2.0749 5.6958 7.2724 22 6 0.2827 5.6202 7.0020 23 8 2.7155 6.3532 6.1878 24 8 2.3616 6.0526 8.6177 25 6 1.4555 2.4614 5.8057 26 6 1.3142 1.7851 4.6102 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0957 3.1409 -1.1385 34 1 3.6750 3.5150 -4.4446 35 1 1.7601 0.4462 2.3357 36 1 3.8006 3.2637 2.8554 37 1 4.0483 4.4745 4.9833 38 1 2.9701 3.6783 7.9189 39 1 -0.1618 4.9179 7.7072 40 1 -0.1496 6.6094 7.1530 41 1 0.0827 5.2878 5.9833 42 1 0.8008 2.2357 6.6345 43 1 0.5489 1.0304 4.5040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078613155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:12 Heat of formation + Delta-G solvation = -87.178830 kcal Electronic energy + Delta-G solvation = -27433.133711 eV Core-core repulsion = 23412.051866 eV Total energy + Delta-G solvation = -4021.081845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71692 -40.07751 -38.16537 -37.28263 -37.04060 -36.54692 -35.03799 -34.18531 -31.93563 -31.60938 -30.26375 -29.72500 -28.26500 -25.14649 -24.37028 -23.88320 -22.97977 -20.81105 -20.52709 -19.37885 -18.81954 -18.61859 -18.52936 -18.24232 -17.24326 -16.89387 -16.55295 -16.37976 -16.08455 -15.57585 -15.22223 -15.09110 -14.66084 -14.50891 -14.27433 -14.19228 -13.98265 -13.92869 -13.70272 -13.51767 -13.28763 -13.21815 -13.11318 -13.07457 -12.95309 -12.71493 -12.63060 -12.50547 -12.19617 -12.00279 -11.93015 -11.73260 -11.29373 -10.95014 -10.79307 -10.63067 -9.89139 -9.55033 -8.93921 -8.21135 -6.35830 -0.76174 0.24117 0.45388 1.35929 1.39510 1.49119 1.66868 1.76255 2.16753 2.39093 2.79004 2.85355 3.02156 3.09153 3.28735 3.98913 4.00399 4.07530 4.08956 4.17167 4.31348 4.38693 4.43783 4.48492 4.59200 4.69271 4.88261 4.95798 4.98414 5.03415 5.12321 5.21479 5.32681 5.38349 5.42369 5.47509 5.56679 5.60435 5.81829 5.96683 6.07252 6.11639 6.24946 6.73285 7.08238 7.31416 7.65617 8.85138 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.002632 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.944420 B =10634.491320 C =11662.237123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.612 5.612 4 C 0.279 3.721 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.692 3.308 14 O -0.621 6.621 15 N -0.675 5.675 16 C 0.164 3.836 17 C -0.143 4.143 18 C -0.100 4.100 19 C 0.097 3.903 20 N -1.052 6.052 21 S 2.611 3.389 22 C -0.649 4.649 23 O -1.002 7.002 24 O -0.990 6.990 25 C -0.078 4.078 26 C -0.130 4.130 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.028 0.972 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.433 0.567 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.180 0.820 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 -7.896 23.987 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.201 1.201 13 C 0.394 3.606 14 O -0.501 6.501 15 N -0.326 5.326 16 C 0.068 3.932 17 C -0.164 4.164 18 C -0.121 4.121 19 C 0.002 3.998 20 N -0.808 5.808 21 S 2.709 3.291 22 C -0.803 4.803 23 O -0.991 6.991 24 O -0.981 6.981 25 C -0.099 4.099 26 C -0.151 4.151 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.273 0.727 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.198 0.802 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.444 -6.161 23.774 26.688 hybrid contribution 0.912 -0.372 -0.972 1.383 sum -9.532 -6.533 22.803 25.564 Atomic orbital electron populations 1.22165 0.94253 1.03662 1.01819 1.21732 0.95528 0.81208 1.03842 1.47489 1.67271 1.15232 1.04670 1.18632 0.95182 0.91341 0.79129 1.21721 0.98014 1.31943 1.06362 0.93028 1.25810 1.02191 0.94515 0.96498 1.70040 1.37695 1.34214 1.14783 0.85450 0.79218 0.78204 0.78121 1.18650 1.20783 1.20070 1.16158 0.78811 0.84319 0.81300 1.90885 1.53330 1.19411 1.86429 1.42681 1.72820 1.14817 1.02310 1.17989 0.94709 0.94745 0.85734 1.21168 0.98962 0.98738 0.97539 1.21401 0.98909 0.98896 0.92910 1.17213 0.98318 0.98622 0.85638 1.52856 1.77878 1.32657 1.17379 1.04709 0.79405 0.72419 0.72524 1.30291 1.22387 1.13874 1.13732 1.93604 1.74385 1.73841 1.57320 1.93574 1.85329 1.81748 1.37400 1.21526 0.96644 0.93655 0.98087 1.21144 0.98878 1.03360 0.91700 0.88275 0.92186 0.94221 0.90416 0.88751 0.95390 0.98489 0.92425 0.73808 0.87860 0.86437 0.72726 0.81781 0.83569 0.84590 0.80246 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.79 5.93 86.38 0.51 3.30 16 3 N -0.61 -25.43 2.46 -844.19 -2.07 -27.51 16 4 C 0.28 14.96 5.16 85.63 0.44 15.40 16 5 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.32 13.29 21.44 0.28 -56.04 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.69 29.08 8.12 179.06 1.45 30.54 16 14 O -0.62 -32.97 13.37 -4.00 -0.05 -33.02 16 15 N -0.67 -19.55 5.22 -317.02 -1.66 -21.20 16 16 C 0.16 4.47 6.30 38.09 0.24 4.71 16 17 C -0.14 -4.81 8.69 22.37 0.19 -4.61 16 18 C -0.10 -2.83 9.20 22.38 0.21 -2.62 16 19 C 0.10 1.84 5.72 38.16 0.22 2.06 16 20 N -1.05 -15.04 5.61 -51.25 -0.29 -15.33 16 21 S 2.61 44.75 6.07 -56.49 -0.34 44.41 16 22 C -0.65 -5.12 10.81 113.37 1.23 -3.90 16 23 O -1.00 -28.52 16.85 -127.65 -2.15 -30.67 16 24 O -0.99 -21.96 18.08 -127.65 -2.31 -24.27 16 25 C -0.08 -1.00 9.96 22.39 0.22 -0.77 16 26 C -0.13 -2.09 9.96 22.37 0.22 -1.87 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.09 1.93 6.30 -2.38 -0.02 1.91 16 32 H 0.03 1.51 8.07 -2.38 -0.02 1.49 16 33 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.42 8.50 6.52 -92.70 -0.60 7.90 16 36 H 0.10 4.45 6.23 -2.91 -0.02 4.44 16 37 H 0.12 3.63 7.73 -2.91 -0.02 3.61 16 38 H 0.43 4.12 8.92 -96.75 -0.86 3.26 16 39 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 43 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -91.65 377.09 -0.60 -92.25 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.41 Total: 14.59 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.38 Total: 9.36 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -3.73 Total: -120.07 kcal Atomic # 8 Polarization: -83.45 SS G_CDS: -4.51 Total: -87.96 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.34 Total: 44.41 kcal Total: -91.65 -0.60 -92.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078613155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.066 kcal (2) G-P(sol) polarization free energy of solvation -91.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds