Wall clock time and date at job start Tue Mar 31 2020 23:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46786 * 2 1 4 4 C 1.50697 * 109.46923 * 119.99990 * 2 1 3 5 5 O 1.21285 * 119.99948 * 106.73784 * 4 2 1 6 6 N 1.34777 * 119.99981 * 286.73140 * 4 2 1 7 7 C 1.39927 * 119.99779 * 185.36081 * 6 4 2 8 8 C 1.38875 * 120.07137 * 32.41561 * 7 6 4 9 9 C 1.38108 * 119.92991 * 180.02562 * 8 7 6 10 10 C 1.38288 * 120.07080 * 0.02562 * 9 8 7 11 11 S 1.76198 * 119.93180 * 179.72612 * 10 9 8 12 12 N 1.65599 * 107.22057 * 89.99714 * 11 10 9 13 13 O 1.42098 * 106.40020 * 203.54376 * 11 10 9 14 14 O 1.42109 * 106.39751 * 336.45758 * 11 10 9 15 15 C 1.38287 * 120.13809 * 359.97438 * 10 9 8 16 16 C 1.38108 * 120.07030 * 0.02562 * 15 10 9 17 17 N 1.46901 * 109.46982 * 240.00217 * 2 1 3 18 18 C 1.46897 * 111.00489 * 75.78819 * 17 2 1 19 19 C 1.46906 * 110.99920 * 311.83253 * 17 2 1 20 20 C 1.50703 * 109.46912 * 190.00188 * 19 17 2 21 21 H 1.07997 * 120.00213 * 0.02562 * 20 19 17 22 22 C 1.37871 * 119.99456 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99732 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00701 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47252 * 89.99399 * 24 22 20 26 26 H 1.48493 * 109.47409 * 210.00065 * 24 22 20 27 27 H 1.48505 * 109.46802 * 329.99978 * 24 22 20 28 28 H 1.08998 * 109.46954 * 60.00065 * 1 2 3 29 29 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47085 * 300.00015 * 1 2 3 31 31 H 0.97001 * 120.00037 * 5.35534 * 6 4 2 32 32 H 1.08000 * 120.03493 * 359.97438 * 8 7 6 33 33 H 1.07993 * 119.96880 * 179.97438 * 9 8 7 34 34 H 0.96999 * 119.99539 * 0.02562 * 12 11 10 35 35 H 0.97000 * 120.00067 * 179.97438 * 12 11 10 36 36 H 1.08000 * 119.96294 * 179.97438 * 15 10 9 37 37 H 1.08005 * 120.03473 * 179.97438 * 16 15 10 38 38 H 1.09007 * 109.46664 * 54.15633 * 18 17 2 39 39 H 1.08994 * 109.47334 * 174.15773 * 18 17 2 40 40 H 1.08998 * 109.46977 * 294.16232 * 18 17 2 41 41 H 1.09000 * 109.47007 * 310.00355 * 19 17 2 42 42 H 1.09001 * 109.46648 * 70.00689 * 19 17 2 43 43 H 0.97003 * 120.00263 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5197 -1.8170 1.1354 6 7 1.9402 -0.1160 2.4366 7 6 2.5065 -0.7252 3.5618 8 6 3.6590 -1.4893 3.4334 9 6 4.2152 -2.0897 4.5459 10 6 3.6255 -1.9310 5.7866 11 16 4.3342 -2.7045 7.2022 12 7 5.4186 -1.6357 7.8535 13 8 3.2858 -2.8412 8.1517 14 8 5.0945 -3.8040 6.7202 15 6 2.4779 -1.1707 5.9177 16 6 1.9168 -0.5678 4.8091 17 7 2.0197 -0.6925 -1.1995 18 6 1.8778 0.1545 -2.3913 19 6 1.3328 -1.9781 -1.3825 20 6 2.0220 -2.7660 -2.4666 21 1 2.8843 -2.3533 -2.9690 22 6 1.5516 -4.0137 -2.8169 23 7 2.1527 -4.7012 -3.7633 24 14 0.0597 -4.7274 -1.9483 25 1 -1.1729 -4.3319 -2.6759 26 1 0.1645 -6.2084 -1.9205 27 1 0.0015 -4.2091 -0.5579 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4813 0.7340 2.5246 32 1 4.1193 -1.6147 2.4645 33 1 5.1112 -2.6844 4.4467 34 1 5.5527 -0.7685 7.4402 35 1 5.9192 -1.8767 8.6487 36 1 2.0195 -1.0490 6.8880 37 1 1.0202 0.0256 4.9122 38 1 2.3669 1.1128 -2.2162 39 1 2.3412 -0.3393 -3.2453 40 1 0.8200 0.3187 -2.5964 41 1 1.3615 -2.5413 -0.4497 42 1 0.2960 -1.7986 -1.6669 43 1 1.8216 -5.5790 -4.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:38 Heat of formation + Delta-G solvation = -59.917351 kcal Electronic energy + Delta-G solvation = -27505.645193 eV Core-core repulsion = 23485.745494 eV Total energy + Delta-G solvation = -4019.899699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81203 -38.98190 -37.31717 -36.83177 -36.00228 -34.94812 -33.47773 -32.62789 -31.31531 -31.11376 -29.57639 -27.93696 -25.55130 -24.31592 -23.31901 -22.75639 -20.99781 -19.79933 -19.52851 -18.67770 -17.88196 -17.60857 -17.08712 -16.90314 -16.23424 -15.98733 -15.32398 -14.99174 -14.84755 -14.62381 -14.34016 -14.14802 -13.74645 -13.55611 -13.42007 -13.27775 -13.08274 -12.49522 -12.37401 -12.31821 -12.26158 -12.15105 -12.00660 -11.78239 -11.52562 -11.23917 -11.16503 -11.13148 -10.79362 -10.77477 -10.56797 -10.29091 -9.90285 -9.61865 -9.30425 -9.08137 -8.63311 -8.50756 -7.52080 -6.00623 -3.96268 0.16506 0.53283 1.07725 2.55354 2.75146 2.93868 3.25476 3.29769 3.39202 3.42790 3.55102 4.26052 4.46588 4.50447 4.60659 4.64318 4.72520 4.99912 5.10021 5.13106 5.23443 5.28826 5.33261 5.57299 5.59734 5.66176 5.67190 5.70780 5.88596 5.89518 6.01999 6.07546 6.18218 6.20051 6.58851 6.67990 6.68832 6.82678 6.96732 7.16716 7.63070 7.79419 7.94532 8.16988 8.67193 9.06815 9.61495 11.12819 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.002789 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.355440 B =10038.518219 C =10989.944690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.514 3.486 5 O -0.467 6.467 6 N -0.685 5.685 7 C 0.223 3.777 8 C -0.147 4.147 9 C 0.005 3.995 10 C -0.703 4.703 11 S 2.705 3.295 12 N -1.252 6.252 13 O -0.968 6.968 14 O -0.964 6.964 15 C 0.002 3.998 16 C -0.177 4.177 17 N -0.511 5.511 18 C 0.037 3.963 19 C 0.156 3.844 20 C -0.502 4.502 21 H 0.079 0.921 22 C 0.069 3.931 23 N -0.902 5.902 24 Si 0.872 3.128 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.267 1.267 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.411 0.589 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.416 0.584 35 H 0.418 0.582 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.049 0.951 42 H -0.017 1.017 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 16.125 21.900 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.300 3.700 5 O -0.336 6.336 6 N -0.331 5.331 7 C 0.126 3.874 8 C -0.168 4.168 9 C -0.015 4.015 10 C -0.792 4.792 11 S 2.795 3.205 12 N -0.926 5.926 13 O -0.958 6.958 14 O -0.953 6.953 15 C -0.018 4.018 16 C -0.199 4.199 17 N -0.235 5.235 18 C -0.111 4.111 19 C 0.030 3.970 20 C -0.541 4.541 21 H 0.097 0.903 22 C -0.132 4.132 23 N -0.541 5.541 24 Si 0.699 3.301 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.192 1.192 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.243 0.757 35 H 0.248 0.752 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.001 0.999 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.939 14.037 21.889 26.075 hybrid contribution -1.851 0.944 -0.121 2.082 sum 0.088 14.980 21.768 26.425 Atomic orbital electron populations 1.22430 0.95551 1.03775 1.02450 1.21608 0.94065 0.98038 0.91030 0.88312 1.21166 0.78605 0.86567 0.83626 1.90807 1.39840 1.18151 1.84752 1.43982 1.57251 1.25211 1.06664 1.18156 0.90575 0.92040 0.86636 1.21453 0.95034 0.99691 1.00638 1.20871 0.97684 0.92746 0.90185 1.30321 1.11335 1.20782 1.16782 1.01364 0.73218 0.72678 0.73241 1.53103 1.62379 1.33241 1.43869 1.93589 1.56513 1.85038 1.60636 1.93616 1.70937 1.49802 1.80950 1.20680 0.91603 0.90361 0.99176 1.20978 1.01635 1.05573 0.91679 1.61969 1.56876 1.04569 1.00070 1.22292 0.98828 0.95768 0.94184 1.20418 0.91338 0.86174 0.99053 1.20963 1.14695 1.00984 1.17416 0.90270 1.24842 0.96782 0.96711 0.94877 1.69885 1.40909 1.12921 1.30420 0.86909 0.83570 0.78783 0.80808 1.20486 1.21066 1.19216 0.90976 0.91092 0.92451 0.75244 0.83096 0.83643 0.75706 0.75181 0.83847 0.84671 0.93308 0.89691 0.96376 0.93352 0.99914 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.33 37.16 0.31 -2.08 16 2 C 0.07 0.97 2.70 -68.86 -0.19 0.79 16 3 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 4 C 0.51 8.08 6.67 -10.99 -0.07 8.00 16 5 O -0.47 -9.77 11.98 5.55 0.07 -9.70 16 6 N -0.68 -7.59 5.34 -9.86 -0.05 -7.64 16 7 C 0.22 2.65 6.30 -83.69 -0.53 2.12 16 8 C -0.15 -1.98 8.66 -39.39 -0.34 -2.32 16 9 C 0.01 0.06 9.51 -39.61 -0.38 -0.32 16 10 C -0.70 -7.13 5.94 -39.55 -0.24 -7.36 16 11 S 2.71 25.39 6.28 -107.50 -0.68 24.72 16 12 N -1.25 -6.17 9.55 60.35 0.58 -5.60 16 13 O -0.97 -11.78 17.27 -57.17 -0.99 -12.77 16 14 O -0.96 -12.70 17.28 -57.17 -0.99 -13.69 16 15 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 16 C -0.18 -1.66 9.96 -39.40 -0.39 -2.06 16 17 N -0.51 -10.21 4.44 -237.72 -1.06 -11.27 16 18 C 0.04 0.65 9.10 60.06 0.55 1.20 16 19 C 0.16 3.79 2.30 -4.97 -0.01 3.78 16 20 C -0.50 -14.53 9.09 -34.44 -0.31 -14.85 16 21 H 0.08 2.47 7.34 -52.49 -0.39 2.09 16 22 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 24 Si 0.87 22.39 27.47 -169.99 -4.67 17.72 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 28 H 0.07 0.90 7.06 -51.93 -0.37 0.53 16 29 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 2.84 8.82 -40.82 -0.36 2.48 16 32 H 0.15 2.34 6.35 -52.49 -0.33 2.00 16 33 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 34 H 0.42 1.10 8.92 -34.46 -0.31 0.80 16 35 H 0.42 1.40 8.96 -34.47 -0.31 1.09 16 36 H 0.14 1.03 7.61 -52.49 -0.40 0.63 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 39 H 0.08 1.69 6.91 -51.93 -0.36 1.34 16 40 H 0.02 0.29 7.09 -51.93 -0.37 -0.07 16 41 H 0.05 1.27 4.97 -51.93 -0.26 1.02 16 42 H -0.02 -0.40 6.26 -51.93 -0.33 -0.72 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -40.55 362.64 -8.97 -49.51 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.34 Total: 2.25 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.07 Total: -11.50 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.24 Total: -52.00 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.91 Total: -36.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Atomic # 16 Polarization: 25.39 SS G_CDS: -0.68 Total: 24.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.55 -8.97 -49.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.406 kcal (2) G-P(sol) polarization free energy of solvation -40.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds