Wall clock time and date at job start Tue Mar 31 2020 23:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46678 * 2 1 4 4 C 1.50703 * 109.46733 * 239.99961 * 2 1 3 5 5 O 1.21286 * 119.99971 * 245.60088 * 4 2 1 6 6 N 1.34782 * 119.99622 * 65.61042 * 4 2 1 7 7 C 1.39923 * 119.99467 * 175.75886 * 6 4 2 8 8 C 1.38876 * 120.06941 * 214.88677 * 7 6 4 9 9 C 1.38109 * 119.92895 * 179.67718 * 8 7 6 10 10 C 1.38280 * 120.07248 * 0.61995 * 9 8 7 11 11 S 1.76204 * 119.93116 * 179.70084 * 10 9 8 12 12 N 1.65604 * 107.21595 * 269.97537 * 11 10 9 13 13 O 1.42090 * 106.39974 * 23.51856 * 11 10 9 14 14 O 1.42102 * 106.40172 * 156.44074 * 11 10 9 15 15 C 1.38280 * 120.13966 * 359.68048 * 10 9 8 16 16 C 1.38110 * 120.07349 * 359.97438 * 15 10 9 17 17 N 1.46898 * 109.47199 * 120.00029 * 2 1 3 18 18 C 1.46893 * 110.99956 * 285.36391 * 17 2 1 19 19 C 1.46903 * 110.99772 * 49.32188 * 17 2 1 20 20 C 1.50703 * 109.46968 * 169.99899 * 19 17 2 21 21 H 1.08001 * 119.99886 * 359.72474 * 20 19 17 22 22 C 1.37872 * 119.99998 * 179.97438 * 20 19 17 23 23 N 1.31522 * 119.99873 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00196 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46894 * 89.99721 * 24 22 20 26 26 H 1.48497 * 109.47297 * 209.99550 * 24 22 20 27 27 H 1.48502 * 109.46865 * 330.00192 * 24 22 20 28 28 H 1.08998 * 109.46678 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46827 * 299.99643 * 1 2 3 30 30 H 1.08995 * 109.46991 * 60.00142 * 1 2 3 31 31 H 0.96998 * 120.00213 * 355.74551 * 6 4 2 32 32 H 1.08000 * 120.03083 * 359.97438 * 8 7 6 33 33 H 1.08006 * 119.96695 * 180.29735 * 9 8 7 34 34 H 0.97001 * 119.99164 * 149.99878 * 12 11 10 35 35 H 0.96999 * 120.00190 * 330.00822 * 12 11 10 36 36 H 1.08001 * 119.96694 * 180.02562 * 15 10 9 37 37 H 1.08001 * 120.03896 * 179.97438 * 16 15 10 38 38 H 1.09003 * 109.47107 * 189.02513 * 18 17 2 39 39 H 1.08998 * 109.47513 * 309.02398 * 18 17 2 40 40 H 1.09004 * 109.47027 * 69.03114 * 18 17 2 41 41 H 1.09000 * 109.47619 * 49.99741 * 19 17 2 42 42 H 1.09004 * 109.46964 * 289.99601 * 19 17 2 43 43 H 0.96998 * 119.99729 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6435 -1.7524 -1.1221 6 7 1.8024 -0.1877 -2.4514 7 6 2.3441 -0.7992 -3.5874 8 6 2.7631 -0.0249 -4.6614 9 6 3.3035 -0.6310 -5.7786 10 6 3.4158 -2.0081 -5.8337 11 16 4.0986 -2.7780 -7.2641 12 7 2.8446 -3.0849 -8.3013 13 8 4.9122 -1.7997 -7.8964 14 8 4.5897 -4.0432 -6.8429 15 6 2.9938 -2.7824 -4.7685 16 6 2.4591 -2.1820 -3.6455 17 7 2.0198 -0.6925 1.1994 18 6 1.8527 0.1440 2.3953 19 6 1.3524 -1.9904 1.3672 20 6 2.0443 -2.7743 2.4526 21 1 2.8974 -2.3525 2.9632 22 6 1.5913 -4.0320 2.7901 23 7 2.1954 -4.7164 3.7369 24 14 0.1197 -4.7641 1.9026 25 1 0.5856 -5.5222 0.7136 26 1 -0.6066 -5.6789 2.8195 27 1 -0.7897 -3.6732 1.4689 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.2614 0.6121 -2.5425 32 1 2.6709 1.0504 -4.6211 33 1 3.6340 -0.0291 -6.6122 34 1 2.9974 -3.0887 -9.2591 35 1 1.9573 -3.2607 -7.9509 36 1 3.0832 -3.8577 -4.8144 37 1 2.1293 -2.7873 -2.8141 38 1 2.3646 -0.3206 3.2381 39 1 2.2778 1.1306 2.2110 40 1 0.7915 0.2426 2.6244 41 1 1.3991 -2.5468 0.4311 42 1 0.3101 -1.8300 1.6430 43 1 1.8770 -5.6013 3.9741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:41 Heat of formation + Delta-G solvation = -60.086021 kcal Electronic energy + Delta-G solvation = -27539.244924 eV Core-core repulsion = 23519.337910 eV Total energy + Delta-G solvation = -4019.907013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80250 -38.96446 -37.35399 -36.82685 -36.02489 -34.94060 -33.49423 -32.64298 -31.29915 -31.13087 -29.53853 -27.94490 -25.55104 -24.27719 -23.32213 -22.76238 -21.00594 -19.81109 -19.49963 -18.62218 -17.87860 -17.62980 -17.05677 -16.93834 -16.55266 -15.93008 -15.22201 -14.94575 -14.77586 -14.62078 -14.37662 -14.11552 -13.70917 -13.63474 -13.42847 -13.22092 -13.12127 -12.52492 -12.41865 -12.34914 -12.28377 -12.18145 -12.02290 -11.68164 -11.60200 -11.25858 -11.20326 -11.13555 -10.77206 -10.73315 -10.43461 -10.38949 -9.92244 -9.63863 -9.30076 -9.11778 -8.65370 -8.51646 -7.49645 -6.01719 -3.97516 0.16563 0.54571 1.08867 2.58136 2.74936 2.95334 3.26512 3.29119 3.34811 3.36125 3.55679 4.24172 4.43793 4.51482 4.60112 4.63283 4.72238 5.01084 5.10374 5.13030 5.22430 5.30341 5.31471 5.56104 5.60363 5.65027 5.67796 5.71093 5.88306 5.91141 6.03777 6.07846 6.18743 6.20559 6.58278 6.69271 6.70324 6.81899 6.93853 7.16997 7.59696 7.78475 7.93665 8.18075 8.66560 9.06504 9.59879 11.11839 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.002848 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.979534 B = 9829.061225 C =10994.889946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.101 0.899 4 C 0.513 3.487 5 O -0.468 6.468 6 N -0.685 5.685 7 C 0.219 3.781 8 C -0.174 4.174 9 C 0.002 3.998 10 C -0.702 4.702 11 S 2.706 3.294 12 N -1.250 6.250 13 O -0.968 6.968 14 O -0.961 6.961 15 C 0.000 4.000 16 C -0.146 4.146 17 N -0.511 5.511 18 C 0.039 3.961 19 C 0.159 3.841 20 C -0.502 4.502 21 H 0.080 0.920 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.873 3.127 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.271 1.271 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.411 0.589 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.419 0.581 35 H 0.417 0.583 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.038 0.962 42 H -0.011 1.011 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 12.246 -23.016 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.047 4.047 3 H 0.118 0.882 4 C 0.300 3.700 5 O -0.336 6.336 6 N -0.332 5.332 7 C 0.123 3.877 8 C -0.196 4.196 9 C -0.018 4.018 10 C -0.792 4.792 11 S 2.795 3.205 12 N -0.924 5.924 13 O -0.957 6.957 14 O -0.951 6.951 15 C -0.020 4.020 16 C -0.167 4.167 17 N -0.234 5.234 18 C -0.109 4.109 19 C 0.033 3.967 20 C -0.540 4.540 21 H 0.098 0.902 22 C -0.133 4.133 23 N -0.541 5.541 24 Si 0.701 3.299 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.247 0.753 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.249 0.751 35 H 0.244 0.756 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.006 0.994 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.485 11.056 -22.764 25.546 hybrid contribution -2.780 0.343 -0.064 2.802 sum -6.265 11.399 -22.828 26.274 Atomic orbital electron populations 1.22449 0.95667 1.03700 1.02454 1.21621 0.93877 0.98230 0.91003 0.88156 1.21162 0.79352 0.85887 0.83647 1.90798 1.36335 1.21156 1.85340 1.43938 1.52960 1.31327 1.04975 1.18152 0.91217 0.92199 0.86181 1.20999 1.03941 0.99999 0.94659 1.20650 0.91447 0.92281 0.97421 1.30453 1.23681 1.04735 1.20282 1.01365 0.72428 0.73847 0.72860 1.53177 1.27195 1.91264 1.20717 1.93580 1.65458 1.61542 1.75153 1.93624 1.77166 1.41973 1.82300 1.20903 0.90170 1.00195 0.90715 1.21558 1.02205 0.93542 0.99415 1.61927 1.57283 1.04300 0.99940 1.22270 0.99039 0.95646 0.93932 1.20346 0.91874 0.85988 0.98466 1.20970 1.15334 1.00350 1.17392 0.90239 1.24858 0.96674 0.96761 0.94982 1.69890 1.41050 1.12483 1.30657 0.86897 0.83504 0.79427 0.80082 1.20093 1.21237 1.19575 0.91134 0.90973 0.92492 0.75251 0.84663 0.83900 0.75138 0.75625 0.83724 0.83026 0.89828 0.93332 0.96275 0.94409 0.99359 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 8.33 37.16 0.31 -2.02 16 2 C 0.07 0.98 2.70 -68.86 -0.19 0.79 16 3 H 0.10 1.17 7.85 -51.93 -0.41 0.77 16 4 C 0.51 8.11 6.68 -10.98 -0.07 8.03 16 5 O -0.47 -9.77 11.99 5.55 0.07 -9.70 16 6 N -0.69 -7.68 5.31 -9.86 -0.05 -7.73 16 7 C 0.22 2.63 6.30 -83.69 -0.53 2.10 16 8 C -0.17 -1.64 9.97 -39.39 -0.39 -2.04 16 9 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 10 C -0.70 -7.18 5.98 -39.55 -0.24 -7.42 16 11 S 2.71 25.28 6.28 -107.50 -0.68 24.60 16 12 N -1.25 -6.22 9.52 60.35 0.57 -5.64 16 13 O -0.97 -11.49 17.28 -57.17 -0.99 -12.48 16 14 O -0.96 -12.69 17.28 -57.17 -0.99 -13.68 16 15 C 0.00 0.00 9.51 -39.61 -0.38 -0.37 16 16 C -0.15 -2.01 8.69 -39.39 -0.34 -2.36 16 17 N -0.51 -10.30 4.40 -237.72 -1.05 -11.34 16 18 C 0.04 0.69 9.02 60.06 0.54 1.23 16 19 C 0.16 3.83 2.34 -4.97 -0.01 3.82 16 20 C -0.50 -14.49 9.13 -34.44 -0.31 -14.80 16 21 H 0.08 2.50 7.35 -52.49 -0.39 2.11 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 23 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 24 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.27 -6.41 6.54 56.52 0.37 -6.05 16 28 H 0.07 1.09 6.53 -51.93 -0.34 0.75 16 29 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 30 H 0.06 0.50 7.84 -51.93 -0.41 0.10 16 31 H 0.41 2.91 8.52 -40.82 -0.35 2.57 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.14 1.03 7.61 -52.48 -0.40 0.63 16 34 H 0.42 1.35 8.96 -34.47 -0.31 1.04 16 35 H 0.42 1.25 8.96 -34.48 -0.31 0.94 16 36 H 0.15 1.56 7.61 -52.49 -0.40 1.16 16 37 H 0.15 2.45 6.25 -52.49 -0.33 2.12 16 38 H 0.08 1.68 7.01 -51.93 -0.36 1.31 16 39 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.02 0.31 7.12 -51.93 -0.37 -0.06 16 41 H 0.04 0.96 5.47 -51.93 -0.28 0.68 16 42 H -0.01 -0.26 5.85 -51.93 -0.30 -0.57 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -40.23 362.14 -8.95 -49.18 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.32 Total: 2.91 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.08 Total: -11.47 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.25 Total: -52.06 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.91 Total: -35.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 25.28 SS G_CDS: -0.68 Total: 24.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.23 -8.95 -49.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.909 kcal (2) G-P(sol) polarization free energy of solvation -40.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds