Wall clock time and date at job start Tue Mar 31 2020 23:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47035 * 2 1 4 4 C 1.46900 * 110.99611 * 199.61355 * 3 2 1 5 5 C 1.50689 * 109.47046 * 66.04622 * 4 3 2 6 6 H 1.08001 * 120.00710 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99829 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 119.99973 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47282 * 89.99994 * 9 7 5 11 11 H 1.48508 * 109.47137 * 209.99802 * 9 7 5 12 12 H 1.48493 * 109.47422 * 329.99883 * 9 7 5 13 13 C 1.46905 * 111.00088 * 75.66369 * 3 2 1 14 14 C 1.50697 * 109.46726 * 199.98184 * 13 3 2 15 15 O 1.21284 * 120.00439 * 5.10713 * 14 13 3 16 16 N 1.34785 * 119.99552 * 185.10804 * 14 13 3 17 17 C 1.39929 * 119.99576 * 184.80907 * 16 14 13 18 18 C 1.38868 * 120.07367 * 34.05081 * 17 16 14 19 19 C 1.38113 * 119.92697 * 180.02562 * 18 17 16 20 20 C 1.38273 * 120.07269 * 359.97438 * 19 18 17 21 21 S 1.76205 * 119.93095 * 179.97438 * 20 19 18 22 22 N 1.65595 * 107.21562 * 89.99769 * 21 20 19 23 23 O 1.42094 * 106.40624 * 203.54313 * 21 20 19 24 24 O 1.42102 * 106.40077 * 336.46165 * 21 20 19 25 25 C 1.38280 * 120.14257 * 0.26047 * 20 19 18 26 26 C 1.38114 * 120.06927 * 359.47764 * 25 20 19 27 27 H 1.08992 * 109.47196 * 184.47342 * 1 2 3 28 28 H 1.08998 * 109.47270 * 304.47829 * 1 2 3 29 29 H 1.09003 * 109.46901 * 64.47244 * 1 2 3 30 30 H 1.08993 * 109.47344 * 239.99359 * 2 1 3 31 31 H 1.09003 * 109.46311 * 119.99530 * 2 1 3 32 32 H 1.09004 * 109.46685 * 186.04981 * 4 3 2 33 33 H 1.09002 * 109.47026 * 306.04253 * 4 3 2 34 34 H 0.96999 * 119.99627 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.47302 * 79.97588 * 13 3 2 36 36 H 1.09001 * 109.46901 * 319.97401 * 13 3 2 37 37 H 0.96996 * 120.00276 * 4.80993 * 16 14 13 38 38 H 1.08003 * 120.03402 * 359.97438 * 18 17 16 39 39 H 1.08000 * 119.95926 * 179.97438 * 19 18 17 40 40 H 0.96996 * 120.00870 * 270.00032 * 22 21 20 41 41 H 0.97001 * 119.99762 * 90.00526 * 22 21 20 42 42 H 1.08002 * 119.96594 * 179.74931 * 25 20 19 43 43 H 1.07997 * 120.03527 * 180.25439 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4132 1.4506 -0.4604 5 6 3.4828 1.0457 -1.9102 6 1 2.5821 0.7670 -2.4370 7 6 4.6965 1.0310 -2.5643 8 7 4.7572 0.6781 -3.8298 9 14 6.2544 1.5123 -1.6531 10 1 6.8565 0.3060 -1.0306 11 1 7.2213 2.1115 -2.6080 12 1 5.9242 2.5021 -0.5966 13 6 1.8750 1.9946 1.3288 14 6 1.9093 3.4955 1.1992 15 8 1.9479 4.0088 0.1009 16 7 1.8971 4.2677 2.3038 17 6 1.8272 5.6601 2.1833 18 6 1.1022 6.2334 1.1469 19 6 1.0358 7.6080 1.0305 20 6 1.6896 8.4132 1.9449 21 16 1.6028 10.1665 1.7926 22 7 0.2857 10.6693 2.6612 23 8 2.7453 10.6844 2.4600 24 8 1.3107 10.4367 0.4284 25 6 2.4163 7.8454 2.9753 26 6 2.4823 6.4715 3.1004 27 1 -0.3633 -1.0245 0.0801 28 1 -0.3634 0.5817 0.8471 29 1 -0.3633 0.4429 -0.9274 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7848 2.4693 -0.3493 33 1 4.0250 0.7736 0.1358 34 1 5.6111 0.6675 -4.2899 35 1 2.6929 1.6664 1.9700 36 1 0.9248 1.6894 1.7669 37 1 1.9367 3.8583 3.1823 38 1 0.5917 5.6050 0.4321 39 1 0.4724 8.0544 0.2244 40 1 -0.5822 10.7335 2.2329 41 1 0.3821 10.8999 3.5985 42 1 2.9292 8.4770 3.6856 43 1 3.0466 6.0287 3.9078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:53 Heat of formation + Delta-G solvation = -67.546535 kcal Electronic energy + Delta-G solvation = -27146.600700 eV Core-core repulsion = 23126.370175 eV Total energy + Delta-G solvation = -4020.230525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63904 -38.74235 -37.44539 -36.73961 -36.08314 -34.85248 -33.55110 -32.57113 -31.28036 -30.84357 -30.15730 -28.48533 -25.64826 -23.46449 -23.06700 -22.18797 -20.84251 -19.83808 -19.82050 -18.40292 -17.86112 -17.71064 -17.29372 -17.03559 -16.82867 -15.76509 -15.39786 -14.84471 -14.81341 -14.60826 -14.28108 -14.04021 -13.77287 -13.56583 -13.47897 -13.25118 -12.96727 -12.61384 -12.48990 -12.33249 -12.30691 -12.25946 -11.97897 -11.65020 -11.41780 -11.33737 -11.26896 -10.77300 -10.74197 -10.63254 -10.52488 -10.14422 -9.86775 -9.69214 -9.27432 -9.20101 -8.59212 -8.55729 -7.54659 -6.03654 -4.00085 0.17487 0.59253 1.11584 2.60942 2.78687 2.99687 3.27181 3.36512 3.37129 3.38464 3.63328 4.08731 4.42978 4.49176 4.59112 4.65114 4.83880 5.03488 5.20669 5.27174 5.29481 5.33010 5.42256 5.59252 5.59908 5.65513 5.70370 5.81461 5.91806 5.92323 6.04044 6.14798 6.23676 6.57704 6.58927 6.71576 6.72474 6.80754 6.91159 7.19738 7.58316 7.78327 7.91994 8.21506 8.64174 9.04775 9.57804 11.09609 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002683 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.720668 B =10434.217381 C =11419.733877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.510 5.510 4 C 0.163 3.837 5 C -0.503 4.503 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.036 3.964 14 C 0.507 3.493 15 O -0.468 6.468 16 N -0.689 5.689 17 C 0.220 3.780 18 C -0.145 4.145 19 C 0.001 3.999 20 C -0.708 4.708 21 S 2.708 3.292 22 N -1.245 6.245 23 O -0.962 6.962 24 O -0.958 6.958 25 C -0.001 4.001 26 C -0.176 4.176 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.021 0.979 32 H 0.032 0.968 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.411 0.589 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.420 0.580 41 H 0.419 0.581 42 H 0.142 0.858 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 13.320 21.261 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.234 5.234 4 C 0.038 3.962 5 C -0.542 4.542 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.096 4.096 14 C 0.293 3.707 15 O -0.336 6.336 16 N -0.336 5.336 17 C 0.123 3.877 18 C -0.166 4.166 19 C -0.019 4.019 20 C -0.796 4.796 21 S 2.795 3.205 22 N -0.916 5.916 23 O -0.952 6.952 24 O -0.948 6.948 25 C -0.021 4.021 26 C -0.197 4.197 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.039 0.961 32 H 0.050 0.950 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.247 0.753 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.248 0.752 41 H 0.247 0.753 42 H 0.159 0.841 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.912 14.278 19.315 26.382 hybrid contribution 1.012 -1.139 1.924 2.455 sum -9.900 13.138 21.240 26.865 Atomic orbital electron populations 1.21796 0.96183 1.00269 1.01894 1.22070 0.94618 0.88836 1.01709 1.61673 1.24844 1.17546 1.19342 1.20253 0.82717 0.96300 0.96973 1.20938 0.95373 1.44576 0.93278 0.89997 1.24867 0.98660 0.94948 0.94753 1.69885 1.25712 1.48623 1.09604 0.86891 0.83863 0.79027 0.80110 1.20388 1.21012 1.19454 1.21949 1.02622 0.90233 0.94808 1.21266 0.75600 0.90159 0.83645 1.90807 1.42864 1.74428 1.25511 1.43988 1.74586 1.04076 1.10900 1.18114 0.91604 0.83257 0.94755 1.21371 1.00392 0.95263 0.99623 1.20802 0.93197 0.93190 0.94672 1.30805 1.14958 1.26612 1.07250 1.01361 0.72584 0.73473 0.73067 1.53392 1.27575 1.85101 1.25556 1.93594 1.47820 1.77985 1.75803 1.93616 1.84412 1.84116 1.32673 1.20642 0.92501 0.94782 0.94191 1.21001 1.02711 0.93693 1.02298 0.93039 0.93908 0.91895 0.88424 0.96056 0.94961 1.00075 0.92662 0.92469 0.88173 0.75311 0.83528 0.83926 0.75176 0.75304 0.84070 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.07 37.16 0.37 -1.69 16 2 C 0.06 0.98 5.51 -3.82 -0.02 0.96 16 3 N -0.51 -10.26 3.95 -237.52 -0.94 -11.20 16 4 C 0.16 3.99 3.43 -4.98 -0.02 3.97 16 5 C -0.50 -14.50 8.79 -34.44 -0.30 -14.80 16 6 H 0.08 2.56 7.55 -52.49 -0.40 2.16 16 7 C 0.07 2.05 5.47 -17.81 -0.10 1.95 16 8 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 9 Si 0.87 22.14 27.47 -169.99 -4.67 17.48 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 13 C 0.04 0.54 5.30 -4.97 -0.03 0.51 16 14 C 0.51 8.09 7.13 -10.98 -0.08 8.01 16 15 O -0.47 -9.85 13.23 5.55 0.07 -9.78 16 16 N -0.69 -7.94 5.34 -9.86 -0.05 -7.99 16 17 C 0.22 2.72 6.27 -83.69 -0.52 2.19 16 18 C -0.15 -1.97 8.66 -39.39 -0.34 -2.31 16 19 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 20 C -0.71 -7.33 5.98 -39.55 -0.24 -7.57 16 21 S 2.71 24.65 6.28 -107.50 -0.68 23.98 16 22 N -1.25 -5.52 9.52 60.35 0.57 -4.94 16 23 O -0.96 -11.38 17.27 -57.17 -0.99 -12.37 16 24 O -0.96 -12.09 17.28 -57.17 -0.99 -13.08 16 25 C 0.00 -0.01 9.51 -39.61 -0.38 -0.39 16 26 C -0.18 -1.77 9.97 -39.39 -0.39 -2.17 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.53 6.66 -51.93 -0.35 0.19 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 2.02 6.58 -51.93 -0.34 1.68 16 31 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 32 H 0.03 0.85 5.96 -51.93 -0.31 0.54 16 33 H -0.02 -0.43 7.55 -51.93 -0.39 -0.83 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.06 0.76 7.99 -51.93 -0.42 0.35 16 36 H 0.10 1.16 6.44 -51.93 -0.33 0.83 16 37 H 0.41 3.00 8.82 -40.82 -0.36 2.64 16 38 H 0.15 2.20 6.46 -52.48 -0.34 1.87 16 39 H 0.14 1.46 7.61 -52.49 -0.40 1.06 16 40 H 0.42 1.16 8.96 -34.47 -0.31 0.85 16 41 H 0.42 1.00 8.96 -34.46 -0.31 0.69 16 42 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -40.27 368.44 -9.25 -49.52 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.50 Total: 1.77 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.42 Total: -11.71 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.36 Total: -51.36 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.90 Total: -35.23 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.48 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.68 Total: 23.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.27 -9.25 -49.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.025 kcal (2) G-P(sol) polarization free energy of solvation -40.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds