Wall clock time and date at job start Tue Mar 31 2020 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81404 * 109.47119 * 2 1 4 4 O 1.42091 * 110.53970 * 73.36611 * 3 2 1 5 5 O 1.42096 * 110.54005 * 296.61708 * 3 2 1 6 6 N 1.65598 * 104.45042 * 184.99166 * 3 2 1 7 7 C 1.39919 * 120.00036 * 298.88554 * 6 3 2 8 8 C 1.38875 * 120.01086 * 133.84228 * 7 6 3 9 9 C 1.38072 * 119.99498 * 180.29429 * 8 7 6 10 10 C 1.38838 * 120.00520 * 359.45094 * 9 8 7 11 11 N 1.40197 * 119.99589 * 180.27713 * 10 9 8 12 12 C 1.34776 * 120.00146 * 145.05697 * 11 10 9 13 13 O 1.21593 * 119.99749 * 4.68225 * 12 11 10 14 14 N 1.34777 * 119.99844 * 184.69033 * 12 11 10 15 15 C 1.46497 * 119.99995 * 359.97438 * 14 12 11 16 16 C 1.46496 * 119.99651 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47216 * 90.00294 * 16 14 12 18 18 H 1.08000 * 120.00135 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00460 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00464 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46988 * 90.00541 * 21 19 17 23 23 H 1.48505 * 109.47000 * 210.00005 * 21 19 17 24 24 H 1.48495 * 109.47095 * 330.00211 * 21 19 17 25 25 C 1.38834 * 120.01043 * 0.54733 * 10 9 8 26 26 C 1.38077 * 120.00256 * 359.73086 * 25 10 9 27 27 H 1.08998 * 109.47123 * 59.99630 * 1 2 3 28 28 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46696 * 299.99649 * 1 2 3 30 30 H 1.08994 * 109.46833 * 240.00182 * 2 1 3 31 31 H 1.08998 * 109.47123 * 120.00370 * 2 1 3 32 32 H 0.96998 * 120.00057 * 118.87037 * 6 3 2 33 33 H 1.08002 * 119.99821 * 0.02562 * 8 7 6 34 34 H 1.08009 * 119.99353 * 179.72150 * 9 8 7 35 35 H 0.96996 * 119.99797 * 325.05986 * 11 10 9 36 36 H 1.09003 * 109.47075 * 90.00683 * 15 14 12 37 37 H 1.09006 * 109.47205 * 209.99702 * 15 14 12 38 38 H 1.08990 * 109.47641 * 330.00262 * 15 14 12 39 39 H 1.09005 * 109.47036 * 209.99501 * 16 14 12 40 40 H 1.09001 * 109.47505 * 330.00072 * 16 14 12 41 41 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.00308 * 179.70162 * 25 10 9 43 43 H 1.08005 * 120.00211 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.9418 2.3073 1.2749 5 8 1.7389 2.3791 -1.1896 6 7 3.7786 1.5674 -0.1395 7 6 4.5084 0.8933 0.8458 8 6 5.4732 -0.0367 0.4813 9 6 6.1889 -0.7061 1.4539 10 6 5.9521 -0.4412 2.7961 11 7 6.6830 -1.1168 3.7834 12 6 7.0214 -0.4828 4.9237 13 8 6.6209 0.6459 5.1335 14 7 7.8037 -1.1000 5.8312 15 6 8.2858 -2.4601 5.5784 16 6 8.1719 -0.4107 7.0703 17 6 7.1430 -0.7022 8.1321 18 1 6.2990 -1.3371 7.9064 19 6 7.2785 -0.1576 9.3915 20 7 6.3803 -0.4116 10.3179 21 14 8.7380 0.9411 9.7817 22 1 8.3895 2.3527 9.4798 23 1 9.0830 0.8133 11.2205 24 1 9.9014 0.5307 8.9553 25 6 4.9877 0.4886 3.1607 26 6 4.2677 1.1541 2.1885 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2356 1.9508 -0.9044 33 1 5.6605 -0.2395 -0.5628 34 1 6.9361 -1.4327 1.1705 35 1 6.9453 -2.0404 3.6459 36 1 9.2410 -2.4156 5.0552 37 1 8.4151 -2.9819 6.5267 38 1 7.5603 -2.9948 4.9655 39 1 9.1483 -0.7613 7.4047 40 1 8.2136 0.6635 6.8900 41 1 6.4759 -0.0287 11.2040 42 1 4.8003 0.6910 4.2049 43 1 3.5172 1.8771 2.4722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085591221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:05 Heat of formation + Delta-G solvation = -53.040879 kcal Electronic energy + Delta-G solvation = -27258.405953 eV Core-core repulsion = 23238.804440 eV Total energy + Delta-G solvation = -4019.601513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42907 -38.98368 -37.40371 -36.30536 -35.91719 -34.91836 -33.56697 -33.47906 -32.40741 -30.96521 -28.87598 -27.71172 -25.93524 -24.47052 -23.25769 -22.94802 -21.70525 -19.73873 -19.49051 -18.29849 -17.96738 -17.70120 -17.00957 -16.98159 -16.67108 -15.96481 -15.25867 -15.03206 -14.79536 -14.60430 -14.12529 -13.94503 -13.68644 -13.57295 -13.42290 -13.33002 -13.03704 -12.89735 -12.61923 -12.44157 -12.41897 -12.29619 -12.13807 -12.03635 -11.96607 -11.53101 -11.36465 -10.99173 -10.93622 -10.82678 -10.54403 -10.19369 -9.77197 -9.59811 -9.36870 -8.94398 -8.60413 -7.99971 -7.63839 -6.10288 -4.09506 -0.14920 1.23176 1.37143 2.30416 3.01544 3.29052 3.34776 3.37298 3.38320 3.50074 3.85200 3.90410 4.19071 4.30860 4.38454 4.42211 4.77076 4.84830 4.89353 4.95522 5.16677 5.22157 5.30493 5.33759 5.37835 5.48235 5.51577 5.69601 5.70986 5.98420 6.03957 6.15873 6.31659 6.35444 6.57300 6.65601 6.76393 6.84497 7.14771 7.18340 7.40900 7.58857 8.36983 8.44958 8.92079 9.06652 9.49614 11.03052 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002452 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.456786 B =11418.403896 C =12032.799463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.627 4.627 3 S 2.606 3.394 4 O -0.944 6.944 5 O -0.958 6.958 6 N -1.056 6.056 7 C 0.103 3.897 8 C -0.111 4.111 9 C -0.140 4.140 10 C 0.175 3.825 11 N -0.696 5.696 12 C 0.699 3.301 13 O -0.565 6.565 14 N -0.607 5.607 15 C 0.083 3.917 16 C 0.230 3.770 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.098 4.098 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.422 0.578 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.403 0.597 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.154 0.846 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -4.824 -24.791 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.757 4.757 3 S 2.699 3.301 4 O -0.934 6.934 5 O -0.948 6.948 6 N -0.807 5.807 7 C 0.007 3.993 8 C -0.133 4.133 9 C -0.162 4.162 10 C 0.078 3.922 11 N -0.345 5.345 12 C 0.401 3.599 13 O -0.441 6.441 14 N -0.342 5.342 15 C -0.061 4.061 16 C 0.109 3.891 17 C -0.570 4.570 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.119 4.119 26 C -0.151 4.151 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.259 0.741 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.240 0.760 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.171 0.829 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.099 -3.205 -24.144 24.884 hybrid contribution 1.332 -0.647 -0.080 1.483 sum -3.767 -3.852 -24.224 24.816 Atomic orbital electron populations 1.21515 0.90265 1.05254 1.03540 1.30422 1.07304 1.25815 1.12113 1.05374 0.72645 0.77503 0.74535 1.93600 1.84047 1.73490 1.42218 1.93603 1.80877 1.71823 1.48496 1.53233 1.25778 1.69022 1.32636 1.17355 0.98274 0.96083 0.87558 1.20784 0.97406 0.95783 0.99307 1.20709 1.01728 1.03100 0.90676 1.17702 0.91677 0.95372 0.87427 1.42994 1.58161 1.15682 1.17690 1.15878 0.79871 0.84611 0.79529 1.90905 1.57776 1.18086 1.77339 1.47138 1.51231 1.15520 1.20295 1.21625 0.97865 0.84055 1.02524 1.19635 0.95903 0.93401 0.80134 1.21334 1.09514 1.31616 0.94497 0.90762 1.24849 0.96214 0.95859 0.96052 1.69892 1.34867 1.44768 1.03971 0.86849 0.83212 0.81916 0.77673 1.19819 1.21082 1.19079 1.21460 0.92806 0.95984 1.01694 1.21850 1.01849 1.00680 0.90685 0.90898 0.89819 0.90816 0.84892 0.84503 0.74087 0.85388 0.85397 0.75998 0.93486 0.90002 0.92845 0.94970 0.94301 0.92515 0.82863 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.92 37.16 0.37 -0.52 16 2 C -0.63 -3.98 6.65 37.16 0.25 -3.73 16 3 S 2.61 24.40 5.35 -107.50 -0.58 23.83 16 4 O -0.94 -12.34 15.18 -57.54 -0.87 -13.21 16 5 O -0.96 -11.16 18.08 -57.54 -1.04 -12.20 16 6 N -1.06 -9.02 5.68 32.45 0.18 -8.84 16 7 C 0.10 1.10 6.02 -83.69 -0.50 0.60 16 8 C -0.11 -1.01 9.96 -39.41 -0.39 -1.41 16 9 C -0.14 -1.45 9.96 -39.42 -0.39 -1.85 16 10 C 0.18 2.46 6.30 -83.59 -0.53 1.94 16 11 N -0.70 -10.25 5.22 -14.17 -0.07 -10.33 16 12 C 0.70 13.99 8.12 -86.92 -0.71 13.29 16 13 O -0.57 -13.65 13.36 5.28 0.07 -13.58 16 14 N -0.61 -12.04 2.86 -188.74 -0.54 -12.57 16 15 C 0.08 1.17 10.24 59.85 0.61 1.78 16 16 C 0.23 5.49 4.23 -5.20 -0.02 5.47 16 17 C -0.53 -14.98 9.94 -34.44 -0.34 -15.33 16 18 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 25 C -0.10 -1.56 8.69 -39.42 -0.34 -1.90 16 26 C -0.13 -1.77 9.23 -39.40 -0.36 -2.13 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.42 2.69 8.92 -34.47 -0.31 2.39 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.40 4.48 6.52 -40.82 -0.27 4.21 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 39 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 40 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.15 2.92 6.23 -52.49 -0.33 2.60 16 43 H 0.16 2.27 5.63 -52.48 -0.30 1.97 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -38.40 369.63 -9.27 -47.68 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.64 Total: 5.46 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.46 Total: -1.80 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.34 Total: -58.39 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.84 Total: -39.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 24.40 SS G_CDS: -0.58 Total: 23.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.40 -9.27 -47.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085591221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.364 kcal (2) G-P(sol) polarization free energy of solvation -38.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds