Wall clock time and date at job start Tue Mar 31 2020 23:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81404 * 109.47119 * 2 1 4 4 O 1.42091 * 110.53970 * 73.36611 * 3 2 1 5 5 O 1.42096 * 110.54005 * 296.61708 * 3 2 1 6 6 N 1.65598 * 104.45042 * 184.99166 * 3 2 1 7 7 C 1.39919 * 120.00036 * 298.88554 * 6 3 2 8 8 C 1.38875 * 120.01086 * 133.84228 * 7 6 3 9 9 C 1.38072 * 119.99498 * 180.29429 * 8 7 6 10 10 C 1.38838 * 120.00520 * 359.45094 * 9 8 7 11 11 N 1.40197 * 119.99589 * 180.27713 * 10 9 8 12 12 C 1.34776 * 120.00146 * 145.05697 * 11 10 9 13 13 O 1.21593 * 119.99749 * 4.68225 * 12 11 10 14 14 N 1.34777 * 119.99844 * 184.69033 * 12 11 10 15 15 C 1.46497 * 119.99995 * 359.97438 * 14 12 11 16 16 C 1.46496 * 119.99651 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47216 * 90.00294 * 16 14 12 18 18 H 1.08000 * 120.00135 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00460 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00464 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46988 * 90.00541 * 21 19 17 23 23 H 1.48505 * 109.47000 * 210.00005 * 21 19 17 24 24 H 1.48495 * 109.47095 * 330.00211 * 21 19 17 25 25 C 1.38834 * 120.01043 * 0.54733 * 10 9 8 26 26 C 1.38077 * 120.00256 * 359.73086 * 25 10 9 27 27 H 1.08998 * 109.47123 * 59.99630 * 1 2 3 28 28 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46696 * 299.99649 * 1 2 3 30 30 H 1.08994 * 109.46833 * 240.00182 * 2 1 3 31 31 H 1.08998 * 109.47123 * 120.00370 * 2 1 3 32 32 H 0.96998 * 120.00057 * 118.87037 * 6 3 2 33 33 H 1.08002 * 119.99821 * 0.02562 * 8 7 6 34 34 H 1.08009 * 119.99353 * 179.72150 * 9 8 7 35 35 H 0.96996 * 119.99797 * 325.05986 * 11 10 9 36 36 H 1.09003 * 109.47075 * 90.00683 * 15 14 12 37 37 H 1.09006 * 109.47205 * 209.99702 * 15 14 12 38 38 H 1.08990 * 109.47641 * 330.00262 * 15 14 12 39 39 H 1.09005 * 109.47036 * 209.99501 * 16 14 12 40 40 H 1.09001 * 109.47505 * 330.00072 * 16 14 12 41 41 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.00308 * 179.70162 * 25 10 9 43 43 H 1.08005 * 120.00211 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.9418 2.3073 1.2749 5 8 1.7389 2.3791 -1.1896 6 7 3.7786 1.5674 -0.1395 7 6 4.5084 0.8933 0.8458 8 6 5.4732 -0.0367 0.4813 9 6 6.1889 -0.7061 1.4539 10 6 5.9521 -0.4412 2.7961 11 7 6.6830 -1.1168 3.7834 12 6 7.0214 -0.4828 4.9237 13 8 6.6209 0.6459 5.1335 14 7 7.8037 -1.1000 5.8312 15 6 8.2858 -2.4601 5.5784 16 6 8.1719 -0.4107 7.0703 17 6 7.1430 -0.7022 8.1321 18 1 6.2990 -1.3371 7.9064 19 6 7.2785 -0.1576 9.3915 20 7 6.3803 -0.4116 10.3179 21 14 8.7380 0.9411 9.7817 22 1 8.3895 2.3527 9.4798 23 1 9.0830 0.8133 11.2205 24 1 9.9014 0.5307 8.9553 25 6 4.9877 0.4886 3.1607 26 6 4.2677 1.1541 2.1885 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2356 1.9508 -0.9044 33 1 5.6605 -0.2395 -0.5628 34 1 6.9361 -1.4327 1.1705 35 1 6.9453 -2.0404 3.6459 36 1 9.2410 -2.4156 5.0552 37 1 8.4151 -2.9819 6.5267 38 1 7.5603 -2.9948 4.9655 39 1 9.1483 -0.7613 7.4047 40 1 8.2136 0.6635 6.8900 41 1 6.4759 -0.0287 11.2040 42 1 4.8003 0.6910 4.2049 43 1 3.5172 1.8771 2.4722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085591221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:04 Heat of formation + Delta-G solvation = -83.906451 kcal Electronic energy + Delta-G solvation = -27259.744384 eV Core-core repulsion = 23238.804440 eV Total energy + Delta-G solvation = -4020.939944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70185 -40.12311 -38.27805 -37.21855 -37.06169 -36.42944 -34.92845 -34.22133 -34.05495 -31.92099 -30.58372 -28.87913 -27.32697 -25.01977 -24.81723 -24.01423 -22.99248 -20.98370 -20.43008 -19.43604 -19.14402 -18.77881 -18.69699 -18.28189 -17.42021 -16.78402 -16.67810 -16.63893 -16.02585 -15.56151 -15.26855 -15.10736 -15.05891 -14.53740 -14.49461 -14.31750 -14.15484 -13.99718 -13.74220 -13.66641 -13.43532 -13.31848 -13.30671 -13.15097 -13.02684 -12.78952 -12.43437 -12.42532 -12.27812 -12.04611 -11.86524 -11.73750 -11.57865 -11.13522 -10.82262 -10.65795 -9.92640 -9.49241 -8.78474 -8.32974 -6.38023 -0.88459 0.25387 0.42383 1.33619 1.39109 1.46423 1.55473 1.71082 2.14296 2.32205 2.67263 2.78756 3.00499 3.05488 3.16300 3.66070 3.86138 3.99003 4.03965 4.14822 4.28663 4.35956 4.40305 4.51456 4.63836 4.68296 4.70725 4.77804 4.83232 4.89856 4.95391 5.08530 5.13578 5.24351 5.37416 5.44320 5.46036 5.57879 5.59047 5.93181 6.02113 6.18038 6.27448 6.63416 7.01820 7.23897 7.60091 8.84110 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002452 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.456786 B =11418.403896 C =12032.799463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.604 4.604 3 S 2.604 3.396 4 O -0.993 6.993 5 O -0.983 6.983 6 N -1.047 6.047 7 C 0.117 3.883 8 C -0.092 4.092 9 C -0.116 4.116 10 C 0.148 3.852 11 N -0.674 5.674 12 C 0.691 3.309 13 O -0.620 6.620 14 N -0.617 5.617 15 C 0.076 3.924 16 C 0.239 3.761 17 C -0.536 4.536 18 H 0.027 0.973 19 C 0.010 3.990 20 N -0.947 5.947 21 Si 0.949 3.051 22 H -0.280 1.280 23 H -0.276 1.276 24 H -0.233 1.233 25 C -0.127 4.127 26 C -0.147 4.147 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.435 0.565 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.422 0.578 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.268 0.732 42 H 0.103 0.897 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -6.912 -28.645 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.737 4.737 3 S 2.702 3.298 4 O -0.982 6.982 5 O -0.973 6.973 6 N -0.799 5.799 7 C 0.021 3.979 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.052 3.948 11 N -0.325 5.325 12 C 0.393 3.607 13 O -0.500 6.500 14 N -0.351 5.351 15 C -0.066 4.066 16 C 0.117 3.883 17 C -0.574 4.574 18 H 0.045 0.955 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.771 3.229 22 H -0.205 1.205 23 H -0.201 1.201 24 H -0.156 1.156 25 C -0.149 4.149 26 C -0.169 4.169 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.186 0.814 31 H 0.161 0.839 32 H 0.275 0.725 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.709 -5.324 -28.077 28.706 hybrid contribution 0.409 -0.076 0.983 1.068 sum -2.300 -5.400 -27.094 27.723 Atomic orbital electron populations 1.21702 0.89951 1.06627 1.03691 1.30243 1.07518 1.21829 1.14152 1.05215 0.72669 0.78918 0.72983 1.93553 1.84649 1.75918 1.44130 1.93566 1.81201 1.73631 1.48896 1.53006 1.25463 1.69043 1.32421 1.17344 0.98201 0.95960 0.86395 1.21274 0.95101 0.93545 1.01432 1.21106 1.01488 1.02699 0.88423 1.17927 0.91936 0.96024 0.88883 1.42607 1.57449 1.16292 1.16190 1.16157 0.79571 0.84242 0.80739 1.90877 1.59580 1.20754 1.78751 1.47110 1.51502 1.17535 1.18994 1.21960 1.00431 0.81042 1.03144 1.19284 0.95415 0.92927 0.80718 1.21590 1.09208 1.30548 0.96100 0.95457 1.25862 0.99647 0.97493 0.95823 1.70052 1.37444 1.46557 1.04660 0.85709 0.80114 0.78796 0.78259 1.20541 1.20079 1.15609 1.21121 0.95400 0.98560 0.99797 1.21673 1.01986 1.00941 0.92282 0.90161 0.87714 0.91582 0.81421 0.83895 0.72547 0.80502 0.81241 0.73676 0.89825 0.90950 0.89761 0.92435 0.96299 0.92311 0.87851 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.92 71.98 0.71 -0.92 16 2 C -0.60 -6.12 6.65 71.98 0.48 -5.65 16 3 S 2.60 47.28 5.35 -56.49 -0.30 46.98 16 4 O -0.99 -27.66 15.18 -127.65 -1.94 -29.60 16 5 O -0.98 -22.20 18.08 -127.65 -2.31 -24.50 16 6 N -1.05 -15.81 5.68 -51.26 -0.29 -16.10 16 7 C 0.12 2.27 6.02 38.16 0.23 2.50 16 8 C -0.09 -1.23 9.96 22.38 0.22 -1.01 16 9 C -0.12 -1.89 9.96 22.37 0.22 -1.67 16 10 C 0.15 4.02 6.30 38.09 0.24 4.26 16 11 N -0.67 -19.20 5.22 -317.02 -1.66 -20.85 16 12 C 0.69 28.29 8.12 179.05 1.45 29.75 16 13 O -0.62 -31.95 13.36 -4.01 -0.05 -32.00 16 14 N -0.62 -24.39 2.86 -869.32 -2.48 -26.87 16 15 C 0.08 1.96 10.24 127.77 1.31 3.27 16 16 C 0.24 11.52 4.23 85.63 0.36 11.88 16 17 C -0.54 -31.52 9.94 25.60 0.25 -31.27 16 18 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 19 C 0.01 0.57 5.47 84.66 0.46 1.03 16 20 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 21 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.23 -9.63 6.54 99.48 0.65 -8.98 16 25 C -0.13 -4.32 8.69 22.37 0.19 -4.13 16 26 C -0.15 -4.22 9.23 22.39 0.21 -4.02 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.44 4.34 8.92 -96.75 -0.86 3.48 16 33 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.42 8.17 6.52 -92.71 -0.60 7.56 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.02 8.07 -2.38 -0.02 2.00 16 38 H 0.08 1.60 6.30 -2.39 -0.02 1.59 16 39 H 0.06 2.48 7.13 -2.38 -0.02 2.46 16 40 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.10 4.51 6.23 -2.91 -0.02 4.49 16 43 H 0.14 4.42 5.63 -2.91 -0.02 4.40 16 Total: -1.00 -93.31 369.63 -0.96 -94.27 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.46 Total: 18.31 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.35 Total: 4.04 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -4.13 Total: -123.89 kcal Atomic # 8 Polarization: -81.81 SS G_CDS: -4.30 Total: -86.11 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.30 Total: 46.98 kcal Total: -93.31 -0.96 -94.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085591221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.362 kcal (2) G-P(sol) polarization free energy of solvation -93.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds