Wall clock time and date at job start Wed Apr 1 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36247 * 120.43860 * 2 1 4 4 C 1.35095 * 120.86724 * 179.76335 * 3 2 1 5 5 N 1.33172 * 121.72064 * 0.52727 * 4 3 2 6 6 C 1.31579 * 120.75683 * 359.73865 * 5 4 3 7 7 N 1.39097 * 120.44906 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00062 * 359.97438 * 7 6 5 9 9 O 1.21733 * 120.00128 * 0.02562 * 8 7 6 10 10 C 1.46185 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.35062 * 120.00284 * 180.02562 * 10 8 7 12 12 C 1.46941 * 120.00543 * 180.02562 * 11 10 8 13 13 C 1.40036 * 120.09985 * 359.71243 * 12 11 10 14 14 C 1.37594 * 119.89634 * 179.74576 * 13 12 11 15 15 C 1.39179 * 120.10030 * 0.56068 * 14 13 12 16 16 O 1.35569 * 119.89685 * 179.71571 * 15 14 13 17 17 C 1.34777 * 117.00365 * 174.42022 * 16 15 14 18 18 H 1.08002 * 119.99607 * 5.05972 * 17 16 15 19 19 C 1.38718 * 120.00310 * 185.05375 * 17 16 15 20 20 N 1.31502 * 120.00267 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46943 * 90.00501 * 21 19 17 23 23 H 1.48496 * 109.46914 * 210.00421 * 21 19 17 24 24 H 1.48501 * 109.47219 * 330.00386 * 21 19 17 25 25 C 1.39180 * 120.20735 * 359.69644 * 15 14 13 26 26 C 1.37592 * 120.09949 * 0.02562 * 25 15 14 27 27 C 1.35175 * 120.43631 * 180.28271 * 2 1 3 28 28 O 1.21938 * 120.78536 * 359.95503 * 27 2 1 29 29 H 1.09000 * 109.46924 * 269.72041 * 1 2 3 30 30 H 1.09002 * 109.47495 * 149.71534 * 1 2 3 31 31 H 1.09003 * 109.47184 * 29.72021 * 1 2 3 32 32 H 1.08004 * 119.56585 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.14097 * 180.26999 * 4 3 2 34 34 H 0.97002 * 119.99806 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.00274 * 359.97438 * 10 8 7 36 36 H 1.07999 * 119.99950 * 359.97438 * 11 10 8 37 37 H 1.07999 * 120.04910 * 0.02562 * 13 12 11 38 38 H 1.07998 * 119.94762 * 180.25327 * 14 13 12 39 39 H 0.96994 * 120.00580 * 179.97438 * 20 19 17 40 40 H 1.07997 * 119.94854 * 180.02562 * 25 15 14 41 41 H 1.07996 * 120.05066 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1552 1.1747 0.0000 4 6 3.5061 1.1848 0.0048 5 7 4.2147 0.0573 -0.0008 6 6 3.6155 -1.1141 -0.0060 7 7 4.3620 -2.2877 -0.0113 8 6 5.7085 -2.2300 -0.0115 9 8 6.2714 -1.1506 -0.0066 10 6 6.4930 -3.4634 -0.0175 11 6 7.8424 -3.4056 -0.0172 12 6 8.6310 -4.6454 -0.0239 13 6 7.9857 -5.8883 -0.0245 14 6 8.7283 -7.0466 -0.0361 15 6 10.1187 -6.9844 -0.0354 16 8 10.8462 -8.1283 -0.0409 17 6 12.1831 -8.0027 -0.1567 18 1 12.6352 -7.0218 -0.1574 19 6 12.9784 -9.1331 -0.2748 20 7 12.4280 -10.3273 -0.2743 21 14 14.8315 -8.9588 -0.4345 22 1 15.4479 -8.9700 0.9164 23 1 15.3680 -10.0902 -1.2328 24 1 15.1515 -7.6778 -1.1140 25 6 10.7645 -5.7515 -0.0294 26 6 10.0302 -4.5879 -0.0236 27 6 2.1497 -1.1655 -0.0058 28 8 1.5626 -2.2342 -0.0102 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3634 -0.8874 -0.5182 31 1 -0.3634 0.8925 -0.5095 32 1 1.6152 2.1101 0.0004 33 1 4.0249 2.1320 0.0091 34 1 3.9134 -3.1478 -0.0147 35 1 5.9936 -4.4211 -0.0214 36 1 8.3418 -2.4481 -0.0129 37 1 6.9069 -5.9374 -0.0205 38 1 8.2314 -8.0055 -0.0407 39 1 12.9840 -11.1177 -0.3572 40 1 11.8436 -5.7081 -0.0293 41 1 10.5321 -3.6317 -0.0193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085733189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:51 Heat of formation + Delta-G solvation = 9.192370 kcal Electronic energy + Delta-G solvation = -26744.312683 eV Core-core repulsion = 22591.965855 eV Total energy + Delta-G solvation = -4152.346828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90712 -39.75256 -39.14871 -37.87605 -36.97646 -36.26890 -34.14027 -33.21589 -32.30654 -30.43695 -30.09562 -28.70971 -28.20594 -25.80767 -25.03007 -23.77459 -22.94536 -22.14539 -20.91974 -19.87130 -18.76551 -18.19616 -17.95624 -17.35109 -17.02770 -16.78740 -16.76472 -15.80223 -15.01769 -14.96478 -14.80107 -14.72018 -14.41987 -14.16517 -13.84834 -13.79854 -13.73351 -13.45411 -13.07900 -13.04434 -12.97024 -12.60035 -11.96133 -11.82735 -11.73899 -11.62943 -11.56538 -11.12889 -11.08193 -10.69285 -10.54500 -10.21043 -10.19834 -9.61503 -9.49848 -9.19554 -8.87771 -8.38288 -7.92882 -7.12208 -6.65774 -4.20381 0.30525 1.07420 1.37100 1.78212 2.14060 2.52281 2.78200 3.03468 3.04636 3.09714 3.22735 3.65222 3.69735 3.81992 4.15666 4.32755 4.45780 4.50587 4.66772 4.92043 4.94225 4.98522 5.01287 5.04024 5.24735 5.31976 5.52997 5.58833 5.66373 5.81901 6.00338 6.06903 6.10402 6.31621 6.43606 6.46097 6.59678 6.78451 6.89963 7.05366 7.13071 7.23090 7.24170 7.28550 7.63602 7.73090 7.79554 8.23015 8.78898 9.45751 10.50725 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.001590 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.742844 B =17602.398863 C =18318.291315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.485 5.485 3 C 0.028 3.972 4 C 0.001 3.999 5 N -0.418 5.418 6 C 0.306 3.694 7 N -0.635 5.635 8 C 0.548 3.452 9 O -0.489 6.489 10 C -0.285 4.285 11 C 0.048 3.952 12 C -0.202 4.202 13 C -0.041 4.041 14 C -0.200 4.200 15 C 0.168 3.832 16 O -0.161 6.161 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.243 4.243 26 C -0.033 4.033 27 C 0.485 3.515 28 O -0.529 6.529 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.425 0.575 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.274 0.726 40 H 0.131 0.869 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 20.531 0.296 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.201 5.201 3 C -0.098 4.098 4 C -0.138 4.138 5 N -0.142 5.142 6 C 0.044 3.956 7 N -0.283 5.283 8 C 0.340 3.660 9 O -0.361 6.361 10 C -0.306 4.306 11 C 0.028 3.972 12 C -0.203 4.203 13 C -0.060 4.060 14 C -0.219 4.219 15 C 0.111 3.889 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.483 5.483 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.262 4.262 26 C -0.051 4.051 27 C 0.276 3.724 28 O -0.406 6.406 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.184 0.816 33 H 0.190 0.810 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.284 20.266 0.295 27.976 hybrid contribution -0.310 -0.262 -0.055 0.410 sum -19.595 20.003 0.240 28.002 Atomic orbital electron populations 1.22204 0.76057 1.05232 1.04170 1.45220 1.09221 1.06039 1.59577 1.22695 0.94508 0.89954 1.02685 1.21814 0.89128 0.97137 1.05762 1.67969 1.38323 0.96281 1.11597 1.21167 0.86423 0.88143 0.99841 1.43308 1.06995 1.06688 1.71274 1.18643 0.80375 0.90695 0.76329 1.90889 1.69539 1.30226 1.45422 1.22278 0.94762 0.95977 1.17628 1.22300 0.92995 0.97197 0.84685 1.18434 0.92999 0.91976 1.16851 1.20905 0.98535 0.91105 0.95405 1.20157 0.91072 0.98598 1.12057 1.19627 0.91403 0.86636 0.91234 1.83900 1.20276 1.26537 1.75487 1.21490 0.78256 0.95138 1.51982 0.88488 1.25400 1.00960 0.94119 0.95972 1.70007 1.36774 0.97827 1.43736 0.85642 0.79856 0.78715 0.78889 1.19624 1.20042 1.18927 1.21099 1.00816 0.91846 1.12446 1.20992 0.92525 0.97426 0.94151 1.19010 0.88294 0.84113 0.80990 1.90963 1.70586 1.27453 1.51562 0.90274 0.88704 0.89187 0.81577 0.80958 0.73695 0.85469 0.85709 0.86290 0.86081 0.91567 0.85095 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.46 59.84 0.63 0.88 16 2 N -0.48 -3.66 3.02 -124.88 -0.38 -4.04 16 3 C 0.03 0.16 10.32 -16.71 -0.17 -0.01 16 4 C 0.00 0.01 11.03 -18.09 -0.20 -0.19 16 5 N -0.42 -5.49 8.02 -10.99 -0.09 -5.58 16 6 C 0.31 3.92 7.68 -152.55 -1.17 2.75 16 7 N -0.63 -8.00 5.39 -10.96 -0.06 -8.06 16 8 C 0.55 8.03 7.70 -13.07 -0.10 7.93 16 9 O -0.49 -8.64 14.53 5.16 0.07 -8.56 16 10 C -0.29 -3.89 9.40 -37.52 -0.35 -4.24 16 11 C 0.05 0.72 9.45 -37.19 -0.35 0.36 16 12 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 13 C -0.04 -0.70 9.40 -39.14 -0.37 -1.07 16 14 C -0.20 -3.98 9.97 -39.47 -0.39 -4.37 16 15 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.36 9.74 0.75 0.01 -4.36 16 17 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 21 Si 0.95 19.47 29.55 -169.99 -5.02 14.44 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 26 C -0.03 -0.57 9.78 -39.14 -0.38 -0.96 16 27 C 0.48 5.46 7.65 -12.68 -0.10 5.36 16 28 O -0.53 -6.95 16.33 4.98 0.08 -6.87 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.48 7.49 -51.93 -0.39 0.09 16 31 H 0.09 0.08 8.05 -51.93 -0.42 -0.34 16 32 H 0.17 0.21 8.06 -52.48 -0.42 -0.21 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.42 4.39 8.27 -40.82 -0.34 4.06 16 35 H 0.13 1.48 6.07 -52.49 -0.32 1.16 16 36 H 0.13 1.83 7.52 -52.49 -0.39 1.43 16 37 H 0.12 1.64 6.16 -52.49 -0.32 1.32 16 38 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -34.74 364.09 -7.14 -41.87 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.00 Total: 7.11 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.00 Total: -8.45 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.23 Total: -40.68 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.16 Total: -19.78 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.74 -7.14 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085733189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.065 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds