Wall clock time and date at job start Wed Apr 1 2020 00:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36247 * 120.43860 * 2 1 4 4 C 1.35095 * 120.86724 * 179.76335 * 3 2 1 5 5 N 1.33172 * 121.72064 * 0.52727 * 4 3 2 6 6 C 1.31579 * 120.75683 * 359.73865 * 5 4 3 7 7 N 1.39097 * 120.44906 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00062 * 359.97438 * 7 6 5 9 9 O 1.21733 * 120.00128 * 0.02562 * 8 7 6 10 10 C 1.46185 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.35062 * 120.00284 * 180.02562 * 10 8 7 12 12 C 1.46941 * 120.00543 * 180.02562 * 11 10 8 13 13 C 1.40036 * 120.09985 * 359.71243 * 12 11 10 14 14 C 1.37594 * 119.89634 * 179.74576 * 13 12 11 15 15 C 1.39179 * 120.10030 * 0.56068 * 14 13 12 16 16 O 1.35569 * 119.89685 * 179.71571 * 15 14 13 17 17 C 1.34777 * 117.00365 * 174.42022 * 16 15 14 18 18 H 1.08002 * 119.99607 * 5.05972 * 17 16 15 19 19 C 1.38718 * 120.00310 * 185.05375 * 17 16 15 20 20 N 1.31502 * 120.00267 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46943 * 90.00501 * 21 19 17 23 23 H 1.48496 * 109.46914 * 210.00421 * 21 19 17 24 24 H 1.48501 * 109.47219 * 330.00386 * 21 19 17 25 25 C 1.39180 * 120.20735 * 359.69644 * 15 14 13 26 26 C 1.37592 * 120.09949 * 0.02562 * 25 15 14 27 27 C 1.35175 * 120.43631 * 180.28271 * 2 1 3 28 28 O 1.21938 * 120.78536 * 359.95503 * 27 2 1 29 29 H 1.09000 * 109.46924 * 269.72041 * 1 2 3 30 30 H 1.09002 * 109.47495 * 149.71534 * 1 2 3 31 31 H 1.09003 * 109.47184 * 29.72021 * 1 2 3 32 32 H 1.08004 * 119.56585 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.14097 * 180.26999 * 4 3 2 34 34 H 0.97002 * 119.99806 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.00274 * 359.97438 * 10 8 7 36 36 H 1.07999 * 119.99950 * 359.97438 * 11 10 8 37 37 H 1.07999 * 120.04910 * 0.02562 * 13 12 11 38 38 H 1.07998 * 119.94762 * 180.25327 * 14 13 12 39 39 H 0.96994 * 120.00580 * 179.97438 * 20 19 17 40 40 H 1.07997 * 119.94854 * 180.02562 * 25 15 14 41 41 H 1.07996 * 120.05066 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1552 1.1747 0.0000 4 6 3.5061 1.1848 0.0048 5 7 4.2147 0.0573 -0.0008 6 6 3.6155 -1.1141 -0.0060 7 7 4.3620 -2.2877 -0.0113 8 6 5.7085 -2.2300 -0.0115 9 8 6.2714 -1.1506 -0.0066 10 6 6.4930 -3.4634 -0.0175 11 6 7.8424 -3.4056 -0.0172 12 6 8.6310 -4.6454 -0.0239 13 6 7.9857 -5.8883 -0.0245 14 6 8.7283 -7.0466 -0.0361 15 6 10.1187 -6.9844 -0.0354 16 8 10.8462 -8.1283 -0.0409 17 6 12.1831 -8.0027 -0.1567 18 1 12.6352 -7.0218 -0.1574 19 6 12.9784 -9.1331 -0.2748 20 7 12.4280 -10.3273 -0.2743 21 14 14.8315 -8.9588 -0.4345 22 1 15.4479 -8.9700 0.9164 23 1 15.3680 -10.0902 -1.2328 24 1 15.1515 -7.6778 -1.1140 25 6 10.7645 -5.7515 -0.0294 26 6 10.0302 -4.5879 -0.0236 27 6 2.1497 -1.1655 -0.0058 28 8 1.5626 -2.2342 -0.0102 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3634 -0.8874 -0.5182 31 1 -0.3634 0.8925 -0.5095 32 1 1.6152 2.1101 0.0004 33 1 4.0249 2.1320 0.0091 34 1 3.9134 -3.1478 -0.0147 35 1 5.9936 -4.4211 -0.0214 36 1 8.3418 -2.4481 -0.0129 37 1 6.9069 -5.9374 -0.0205 38 1 8.2314 -8.0055 -0.0407 39 1 12.9840 -11.1177 -0.3572 40 1 11.8436 -5.7081 -0.0293 41 1 10.5321 -3.6317 -0.0193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085733189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:50 Heat of formation + Delta-G solvation = -14.359770 kcal Electronic energy + Delta-G solvation = -26745.333980 eV Core-core repulsion = 22591.965855 eV Total energy + Delta-G solvation = -4153.368125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65441 -40.94785 -40.65221 -38.68216 -38.52123 -37.15308 -35.05664 -34.73181 -33.98628 -31.96564 -30.88536 -29.68285 -29.13971 -27.54467 -26.06209 -24.48588 -24.17910 -23.62435 -22.15391 -21.01186 -20.09230 -19.35587 -19.01220 -18.73540 -18.06582 -17.81879 -17.47057 -16.67893 -16.42440 -16.35099 -16.01131 -15.93589 -15.61658 -15.46788 -15.29082 -14.90202 -14.61329 -14.42512 -14.33913 -14.10897 -13.84919 -13.60306 -13.39674 -13.31573 -13.17567 -12.70736 -12.59947 -12.41970 -12.28209 -12.20894 -12.12526 -11.30742 -11.20794 -11.11406 -11.05093 -10.56854 -10.08137 -9.88698 -8.78440 -8.57756 -8.51752 -6.18069 -0.51344 -0.13483 0.59451 0.60204 1.11274 1.13597 1.36357 1.46367 1.53625 1.97451 2.15721 2.23263 2.67959 2.87057 3.00909 3.18135 3.36539 3.43197 3.83151 3.90679 3.96228 4.09369 4.16978 4.29683 4.33936 4.34837 4.42354 4.48402 4.65352 4.74007 4.76086 4.94660 5.01817 5.14142 5.19777 5.24526 5.32874 5.38768 5.57640 5.60412 5.64067 5.79946 5.97606 6.10513 6.15777 6.49967 6.88058 6.92401 7.21454 7.69429 8.70145 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.001590 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.742844 B =17602.398863 C =18318.291315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.477 5.477 3 C 0.079 3.921 4 C -0.037 4.037 5 N -0.440 5.440 6 C 0.256 3.744 7 N -0.630 5.630 8 C 0.546 3.454 9 O -0.524 6.524 10 C -0.249 4.249 11 C 0.029 3.971 12 C -0.173 4.173 13 C -0.037 4.037 14 C -0.208 4.208 15 C 0.131 3.869 16 O -0.219 6.219 17 C -0.418 4.418 18 H 0.107 0.893 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.252 1.252 25 C -0.249 4.249 26 C -0.036 4.036 27 C 0.477 3.523 28 O -0.560 6.560 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.228 0.772 33 H 0.197 0.803 34 H 0.432 0.568 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.275 0.725 40 H 0.126 0.874 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.403 25.323 0.264 34.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.190 5.190 3 C -0.049 4.049 4 C -0.177 4.177 5 N -0.163 5.163 6 C -0.004 4.004 7 N -0.279 5.279 8 C 0.337 3.663 9 O -0.398 6.398 10 C -0.270 4.270 11 C 0.010 3.990 12 C -0.174 4.174 13 C -0.055 4.055 14 C -0.227 4.227 15 C 0.079 3.921 16 O -0.124 6.124 17 C -0.493 4.493 18 H 0.124 0.876 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.054 4.054 27 C 0.270 3.730 28 O -0.441 6.441 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.244 0.756 33 H 0.213 0.787 34 H 0.272 0.728 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.588 25.128 0.268 33.789 hybrid contribution -0.001 -1.054 -0.023 1.055 sum -22.589 24.073 0.245 33.013 Atomic orbital electron populations 1.22576 0.73428 1.06761 1.05578 1.45555 1.10912 1.05633 1.56945 1.23538 0.93965 0.91070 0.96364 1.22331 0.90714 0.96673 1.07996 1.67821 1.40745 0.97596 1.10173 1.21206 0.87255 0.87992 1.03902 1.43057 1.06311 1.07513 1.71005 1.18737 0.81153 0.90353 0.76045 1.90871 1.70436 1.31364 1.47167 1.22580 0.94409 0.96870 1.13092 1.22189 0.93361 0.96400 0.87078 1.18748 0.92977 0.92779 1.12853 1.21307 1.00375 0.89923 0.93873 1.20415 0.90265 1.00023 1.12014 1.20200 0.92604 0.86824 0.92493 1.83884 1.20627 1.28417 1.79510 1.21918 0.78809 0.95864 1.52738 0.87619 1.26616 1.06061 0.93528 0.95494 1.70144 1.38625 0.98736 1.47514 0.84578 0.73337 0.79096 0.79189 1.18757 1.19596 1.17565 1.21206 1.00937 0.92140 1.12563 1.21328 0.93047 0.97698 0.93358 1.18865 0.87830 0.84892 0.81410 1.90936 1.70889 1.28621 1.53621 0.88873 0.90085 0.84876 0.75567 0.78666 0.72802 0.82908 0.85163 0.82340 0.85995 0.91599 0.85642 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.46 127.77 1.34 1.53 16 2 N -0.48 -5.37 3.02 -666.88 -2.01 -7.38 16 3 C 0.08 0.49 10.32 83.28 0.86 1.35 16 4 C -0.04 -0.51 11.03 83.77 0.92 0.42 16 5 N -0.44 -10.91 8.02 -188.69 -1.51 -12.42 16 6 C 0.26 6.27 7.68 135.26 1.04 7.31 16 7 N -0.63 -15.21 5.39 -306.79 -1.65 -16.86 16 8 C 0.55 15.13 7.70 86.31 0.66 15.80 16 9 O -0.52 -17.96 14.53 -4.45 -0.06 -18.03 16 10 C -0.25 -6.05 9.40 23.60 0.22 -5.83 16 11 C 0.03 0.79 9.45 23.82 0.23 1.02 16 12 C -0.17 -5.42 5.87 -20.13 -0.12 -5.54 16 13 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 14 C -0.21 -8.42 9.97 22.34 0.22 -8.20 16 15 C 0.13 6.29 6.66 22.72 0.15 6.44 16 16 O -0.22 -12.79 9.74 -20.22 -0.20 -12.99 16 17 C -0.42 -23.61 9.48 67.93 0.64 -22.96 16 18 H 0.11 5.45 5.18 -2.91 -0.02 5.43 16 19 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 20 N -0.91 -54.66 13.67 21.62 0.30 -54.36 16 21 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.25 -10.48 9.14 22.34 0.20 -10.28 16 26 C -0.04 -1.23 9.78 22.55 0.22 -1.01 16 27 C 0.48 9.95 7.65 86.38 0.66 10.61 16 28 O -0.56 -14.25 16.33 -5.11 -0.08 -14.33 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.14 16 30 H 0.08 0.60 7.49 -2.39 -0.02 0.58 16 31 H 0.13 -0.63 8.05 -2.39 -0.02 -0.65 16 32 H 0.23 -1.28 8.06 -2.91 -0.02 -1.30 16 33 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.43 8.48 8.27 -92.71 -0.77 7.71 16 35 H 0.15 2.90 6.07 -2.91 -0.02 2.89 16 36 H 0.13 3.49 7.52 -2.91 -0.02 3.47 16 37 H 0.16 3.75 6.16 -2.91 -0.02 3.73 16 38 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.13 5.32 5.62 -2.91 -0.02 5.30 16 41 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -85.12 364.09 5.08 -80.04 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.34 Total: 23.48 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 7.93 Total: -10.85 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -4.88 Total: -91.03 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.35 Total: -45.35 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -85.12 5.08 -80.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085733189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.680 kcal (2) G-P(sol) polarization free energy of solvation -85.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds