Wall clock time and date at job start Tue Mar 31 2020 23:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65604 * 119.99790 * 2 1 4 4 O 1.42103 * 106.40192 * 311.46205 * 3 2 1 5 5 O 1.42099 * 106.39928 * 178.53882 * 3 2 1 6 6 C 1.76202 * 107.21554 * 65.00041 * 3 2 1 7 7 C 1.38282 * 119.92703 * 90.00053 * 6 3 2 8 8 C 1.38114 * 120.06671 * 180.02562 * 7 6 3 9 9 C 1.38868 * 119.93227 * 359.97438 * 8 7 6 10 10 N 1.39935 * 120.07148 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99834 * 32.62223 * 10 9 8 12 12 O 1.21579 * 120.00227 * 5.04195 * 11 10 9 13 13 N 1.34781 * 120.00001 * 185.04675 * 11 10 9 14 14 C 1.46502 * 120.00028 * 359.97438 * 13 11 10 15 15 C 1.46500 * 120.00176 * 179.97438 * 13 11 10 16 16 H 1.08997 * 109.46735 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.47006 * 119.99966 * 15 13 11 18 18 C 1.50693 * 109.47187 * 239.99934 * 15 13 11 19 19 H 1.08006 * 120.00276 * 354.28173 * 18 15 13 20 20 C 1.37882 * 120.00261 * 174.27969 * 18 15 13 21 21 N 1.31509 * 120.00395 * 159.15739 * 20 18 15 22 22 Si 1.86805 * 119.99339 * 339.42892 * 20 18 15 23 23 H 1.48503 * 109.46621 * 179.72312 * 22 20 18 24 24 H 1.48498 * 109.47502 * 299.72506 * 22 20 18 25 25 H 1.48497 * 109.47011 * 59.72994 * 22 20 18 26 26 C 1.38866 * 119.85646 * 0.25509 * 9 8 7 27 27 C 1.38117 * 119.93085 * 359.48979 * 26 9 8 28 28 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47035 * 300.00203 * 1 2 3 30 30 H 1.08998 * 109.46574 * 59.99936 * 1 2 3 31 31 H 0.96994 * 119.99879 * 180.02562 * 2 1 3 32 32 H 1.07997 * 119.96954 * 0.04215 * 7 6 3 33 33 H 1.08000 * 120.03249 * 179.97438 * 8 7 6 34 34 H 0.97003 * 120.00674 * 212.61448 * 10 9 8 35 35 H 1.09008 * 109.47126 * 270.00290 * 14 13 11 36 36 H 1.09006 * 109.46949 * 29.99943 * 14 13 11 37 37 H 1.08991 * 109.47362 * 149.99882 * 14 13 11 38 38 H 1.09005 * 109.46821 * 294.15075 * 17 15 13 39 39 H 1.08998 * 109.47060 * 54.15122 * 17 15 13 40 40 H 1.08996 * 109.47030 * 174.15243 * 17 15 13 41 41 H 0.97006 * 119.99457 * 355.21235 * 21 20 18 42 42 H 1.07999 * 120.03222 * 179.71818 * 26 9 8 43 43 H 1.07996 * 119.96477 * 180.25397 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6738 1.1003 0.0348 6 6 1.9378 2.2415 1.5254 7 6 2.7393 2.0145 2.6291 8 6 2.4632 2.6453 3.8263 9 6 1.3796 3.5087 3.9209 10 7 1.0968 4.1489 5.1326 11 6 2.1009 4.4928 5.9634 12 8 3.2561 4.3304 5.6208 13 7 1.8243 5.0165 7.1741 14 6 0.4324 5.2126 7.5868 15 6 2.9156 5.3897 8.0775 16 1 3.8717 5.1719 7.6016 17 6 2.8299 6.8849 8.3903 18 6 2.8006 4.6015 9.3567 19 1 1.9457 3.9625 9.5224 20 6 3.7868 4.6958 10.3157 21 7 3.5265 4.3648 11.5615 22 14 5.4907 5.3011 9.8466 23 1 6.3593 5.3166 11.0509 24 1 6.0749 4.3938 8.8264 25 1 5.3923 6.6742 9.2896 26 6 0.5738 3.7307 2.8119 27 6 0.8584 3.1009 1.6161 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.5823 1.3435 2.5548 33 1 3.0893 2.4673 4.6881 34 1 0.1783 4.3455 5.3746 35 1 0.0999 6.2054 7.2836 36 1 -0.1966 4.4585 7.1135 37 1 0.3581 5.1196 8.6702 38 1 3.0166 7.4575 7.4817 39 1 1.8357 7.1202 8.7703 40 1 3.5763 7.1422 9.1417 41 1 2.6238 4.1210 11.8200 42 1 -0.2723 4.3981 2.8835 43 1 0.2345 3.2764 0.7522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086297405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:19 Heat of formation + Delta-G solvation = -59.819233 kcal Electronic energy + Delta-G solvation = -27492.498265 eV Core-core repulsion = 23472.602821 eV Total energy + Delta-G solvation = -4019.895444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.64007 -38.80604 -37.40637 -36.03288 -35.90639 -35.30244 -34.77364 -32.90198 -31.17265 -30.67301 -29.24424 -26.49382 -26.34031 -24.90053 -23.60211 -23.09609 -21.23657 -19.80444 -19.38377 -18.37216 -18.02978 -17.72379 -17.56850 -16.97228 -16.51908 -15.67969 -15.26074 -15.18509 -14.60984 -14.54996 -14.16969 -13.86105 -13.64279 -13.57734 -13.30464 -13.22604 -13.16781 -12.80836 -12.74467 -12.26594 -12.18997 -12.12170 -11.91311 -11.90457 -11.64940 -11.55086 -11.43642 -11.10550 -10.61123 -10.57456 -10.15303 -9.97036 -9.83927 -9.67100 -9.20836 -9.13550 -8.50912 -8.40483 -7.92800 -6.59077 -4.23425 0.21036 0.71484 1.21771 2.71411 2.85312 3.22424 3.34894 3.45007 3.53753 3.58814 3.72679 4.13950 4.18174 4.40869 4.63798 4.66873 4.73198 5.06008 5.09244 5.13158 5.23959 5.29801 5.34475 5.39932 5.46204 5.67826 5.72171 5.79052 5.99722 6.05501 6.15599 6.23615 6.32650 6.38668 6.48323 6.57723 6.71839 6.83703 6.87502 7.24342 7.37403 7.76591 8.21493 8.24830 8.67837 8.86397 9.42903 10.76925 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.002499 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.421419 B =11202.883883 C =11711.175276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.123 6.123 3 S 2.702 3.298 4 O -0.962 6.962 5 O -0.961 6.961 6 C -0.708 4.708 7 C 0.004 3.996 8 C -0.146 4.146 9 C 0.242 3.758 10 N -0.694 5.694 11 C 0.695 3.305 12 O -0.574 6.574 13 N -0.594 5.594 14 C 0.082 3.918 15 C 0.249 3.751 16 H 0.058 0.942 17 C -0.158 4.158 18 C -0.618 4.618 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.894 5.894 22 Si 1.032 2.968 23 H -0.283 1.283 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.180 4.180 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.418 0.582 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.407 0.593 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.269 0.731 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -5.904 -19.982 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.792 3.208 4 O -0.951 6.951 5 O -0.951 6.951 6 C -0.798 4.798 7 C -0.016 4.016 8 C -0.167 4.167 9 C 0.143 3.857 10 N -0.341 5.341 11 C 0.397 3.603 12 O -0.451 6.451 13 N -0.328 5.328 14 C -0.062 4.062 15 C 0.148 3.852 16 H 0.075 0.925 17 C -0.217 4.217 18 C -0.656 4.656 19 H 0.080 0.920 20 C -0.164 4.164 21 N -0.526 5.526 22 Si 0.859 3.141 23 H -0.208 1.208 24 H -0.204 1.204 25 H -0.200 1.200 26 C -0.202 4.202 27 C -0.021 4.021 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.252 0.748 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.245 0.755 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.151 0.849 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.852 -5.224 -20.097 22.573 hybrid contribution -2.397 -0.377 0.491 2.476 sum -11.249 -5.600 -19.607 23.288 Atomic orbital electron populations 1.21486 0.78560 1.04177 1.02061 1.55355 1.16154 1.24508 1.92193 1.01598 0.72765 0.72580 0.73904 1.93569 1.78831 1.68409 1.54336 1.93596 1.30792 1.83397 1.87297 1.30572 1.08872 1.18647 1.21667 1.20772 0.95388 0.94968 0.90516 1.21474 0.98976 0.96498 0.99778 1.17910 0.94240 0.88856 0.84690 1.43180 1.10469 1.61753 1.18728 1.15990 0.84268 0.79101 0.80915 1.90903 1.18381 1.60387 1.75387 1.47359 1.08230 1.63495 1.13680 1.21617 0.82105 0.99147 1.03364 1.19185 0.85793 0.91750 0.88522 0.92478 1.22478 1.01691 0.97986 0.99531 1.22109 1.10885 1.30893 1.01699 0.91995 1.25641 1.03572 0.94546 0.92599 1.70873 1.23896 1.41303 1.16546 0.84220 0.76317 0.77404 0.76135 1.20845 1.20375 1.20035 1.20919 1.03167 1.04367 0.91760 1.20598 0.93158 0.91219 0.97089 0.90007 0.92040 0.91377 0.74803 0.84102 0.83160 0.75501 0.93474 0.93195 0.89249 0.95470 0.93440 0.91614 0.92073 0.84887 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.14 59.85 0.67 1.08 16 2 N -1.12 -7.50 6.19 -16.63 -0.10 -7.61 16 3 S 2.70 28.18 5.74 -107.50 -0.62 27.56 16 4 O -0.96 -12.19 17.00 -57.17 -0.97 -13.16 16 5 O -0.96 -12.90 17.27 -57.17 -0.99 -13.89 16 6 C -0.71 -8.06 5.95 -39.55 -0.24 -8.29 16 7 C 0.00 0.05 9.51 -39.61 -0.38 -0.33 16 8 C -0.15 -2.22 8.66 -39.39 -0.34 -2.56 16 9 C 0.24 3.39 6.29 -83.69 -0.53 2.86 16 10 N -0.69 -10.02 5.18 -14.23 -0.07 -10.10 16 11 C 0.70 13.48 8.03 -86.91 -0.70 12.78 16 12 O -0.57 -13.18 13.30 5.30 0.07 -13.11 16 13 N -0.59 -11.68 2.75 -181.01 -0.50 -12.18 16 14 C 0.08 1.22 9.03 59.85 0.54 1.76 16 15 C 0.25 5.81 2.23 -69.09 -0.15 5.66 16 16 H 0.06 1.47 5.50 -51.93 -0.29 1.18 16 17 C -0.16 -3.32 8.99 37.16 0.33 -2.99 16 18 C -0.62 -16.36 8.32 -34.44 -0.29 -16.65 16 19 H 0.06 1.74 7.37 -52.48 -0.39 1.35 16 20 C 0.04 1.20 5.25 -17.82 -0.09 1.11 16 21 N -0.89 -26.14 13.70 55.43 0.76 -25.38 16 22 Si 1.03 24.73 26.38 -169.99 -4.48 20.25 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.06 5.95 56.52 0.34 -5.73 16 26 C -0.18 -1.97 9.96 -39.39 -0.39 -2.37 16 27 C 0.00 -0.01 9.51 -39.61 -0.38 -0.38 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.42 2.01 8.96 -34.47 -0.31 1.71 16 32 H 0.14 1.62 7.61 -52.49 -0.40 1.22 16 33 H 0.15 2.64 6.35 -52.49 -0.33 2.31 16 34 H 0.41 4.46 6.62 -40.82 -0.27 4.19 16 35 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 37 H 0.09 1.51 6.91 -51.93 -0.36 1.15 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.92 7.48 -51.93 -0.39 0.53 16 40 H 0.07 1.44 5.20 -51.93 -0.27 1.17 16 41 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.14 1.12 7.61 -52.49 -0.40 0.72 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -36.27 364.05 -8.85 -45.12 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.49 Total: 5.33 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.94 Total: -8.32 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.08 Total: -55.27 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.89 Total: -40.16 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.48 Total: 20.25 kcal Atomic # 16 Polarization: 28.18 SS G_CDS: -0.62 Total: 27.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.27 -8.85 -45.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086297405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.698 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds