Wall clock time and date at job start Tue Mar 31 2020 23:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65603 * 119.99857 * 2 1 4 4 O 1.42105 * 106.40333 * 311.46125 * 3 2 1 5 5 O 1.42105 * 106.40303 * 178.53893 * 3 2 1 6 6 C 1.76205 * 107.21744 * 65.00059 * 3 2 1 7 7 C 1.38285 * 119.92777 * 90.00204 * 6 3 2 8 8 C 1.38112 * 120.06764 * 180.02562 * 7 6 3 9 9 C 1.38864 * 119.93329 * 359.97438 * 8 7 6 10 10 N 1.39935 * 120.07082 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00363 * 35.09275 * 10 9 8 12 12 O 1.21583 * 119.99603 * 355.40718 * 11 10 9 13 13 N 1.34773 * 120.00141 * 175.41546 * 11 10 9 14 14 C 1.46495 * 120.00171 * 359.97438 * 13 11 10 15 15 C 1.46497 * 119.99786 * 180.02562 * 13 11 10 16 16 H 1.09003 * 109.47412 * 359.97438 * 15 13 11 17 17 C 1.53002 * 109.46791 * 239.99139 * 15 13 11 18 18 C 1.50700 * 109.47372 * 119.99360 * 15 13 11 19 19 H 1.07995 * 120.00286 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00041 * 179.97438 * 18 15 13 21 21 N 1.31517 * 120.00160 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00123 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46924 * 270.00236 * 22 20 18 24 24 H 1.48496 * 109.46763 * 30.00143 * 22 20 18 25 25 H 1.48497 * 109.46919 * 150.00330 * 22 20 18 26 26 C 1.38869 * 119.85594 * 0.25876 * 9 8 7 27 27 C 1.38109 * 119.92992 * 359.48543 * 26 9 8 28 28 H 1.08996 * 109.47164 * 59.99557 * 1 2 3 29 29 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46743 * 299.99398 * 1 2 3 31 31 H 0.96997 * 120.00546 * 180.02562 * 2 1 3 32 32 H 1.08005 * 119.96830 * 0.04024 * 7 6 3 33 33 H 1.08004 * 120.03082 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99868 * 215.09256 * 10 9 8 35 35 H 1.09004 * 109.47557 * 270.00689 * 14 13 11 36 36 H 1.09003 * 109.46981 * 30.00634 * 14 13 11 37 37 H 1.08996 * 109.47192 * 150.00619 * 14 13 11 38 38 H 1.09005 * 109.47089 * 179.97438 * 17 15 13 39 39 H 1.08996 * 109.47564 * 299.99810 * 17 15 13 40 40 H 1.09003 * 109.46882 * 60.00668 * 17 15 13 41 41 H 0.97002 * 120.00468 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.03553 * 179.72532 * 26 9 8 43 43 H 1.08004 * 119.96351 * 180.25643 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2330 -1.0216 5 8 3.6738 1.1004 0.0348 6 6 1.9377 2.2415 1.5254 7 6 2.7393 2.0146 2.6291 8 6 2.4632 2.6454 3.8263 9 6 1.3797 3.5088 3.9209 10 7 1.0970 4.1491 5.1326 11 6 2.1035 4.5376 5.9404 12 8 3.2524 4.2582 5.6575 13 7 1.8363 5.2356 7.0619 14 6 0.4519 5.5725 7.4027 15 6 2.9304 5.6584 7.9397 16 1 3.8800 5.3195 7.5256 17 6 2.7338 5.0491 9.3293 18 6 2.9364 7.1616 8.0466 19 1 2.1989 7.7438 7.5143 20 6 3.8830 7.7935 8.8247 21 7 4.7810 7.0845 9.4733 22 14 3.8902 9.6568 8.9579 23 1 4.7494 10.2261 7.8888 24 1 2.5048 10.1692 8.8050 25 1 4.4220 10.0561 10.2856 26 6 0.5738 3.7307 2.8120 27 6 0.8583 3.1010 1.6162 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8400 -0.0004 32 1 3.5823 1.3435 2.5548 33 1 3.0894 2.4674 4.6881 34 1 0.1766 4.3133 5.3912 35 1 0.1926 6.5345 6.9604 36 1 -0.2153 4.8027 7.0150 37 1 0.3484 5.6311 8.4861 38 1 3.5481 5.3632 9.9823 39 1 1.7842 5.3877 9.7435 40 1 2.7295 3.9618 9.2519 41 1 5.4472 7.5291 10.0205 42 1 -0.2723 4.3982 2.8835 43 1 0.2343 3.2764 0.7523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086297408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:22 Heat of formation + Delta-G solvation = -58.529959 kcal Electronic energy + Delta-G solvation = -27392.838642 eV Core-core repulsion = 23372.999105 eV Total energy + Delta-G solvation = -4019.839537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52080 -38.69630 -37.36944 -35.98780 -35.74493 -35.27864 -34.65356 -32.89553 -31.10705 -30.23829 -28.83505 -26.37180 -26.31718 -25.29003 -23.54257 -23.02076 -21.27160 -19.77314 -19.37686 -18.33148 -17.98134 -17.60975 -17.07912 -16.49080 -16.33159 -15.43454 -15.31186 -15.04013 -14.56494 -14.54152 -14.26793 -14.12736 -13.59424 -13.46452 -13.21752 -13.15295 -13.07806 -12.72093 -12.65513 -12.22856 -12.15271 -11.88582 -11.74172 -11.64246 -11.50798 -11.12263 -11.07068 -10.91862 -10.80061 -10.49777 -10.31873 -10.23479 -9.95024 -9.51996 -9.26532 -9.06227 -8.49946 -8.43577 -7.73184 -6.14157 -4.22433 0.24676 0.77095 1.27891 2.79375 2.93738 3.23393 3.30310 3.30949 3.32958 3.60061 3.79912 4.20984 4.24534 4.38210 4.67388 4.72035 4.79302 5.07983 5.17153 5.19852 5.29564 5.35817 5.36286 5.45031 5.52828 5.78110 5.83265 5.87570 6.07479 6.11291 6.22826 6.46327 6.59351 6.60305 6.69284 6.86173 6.95929 7.00883 7.32238 7.59044 7.67472 7.95360 8.10863 8.44657 8.76794 8.99509 9.44480 10.91270 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.002325 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.777390 B =12037.840672 C =12253.090717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.123 6.123 3 S 2.701 3.299 4 O -0.961 6.961 5 O -0.961 6.961 6 C -0.707 4.707 7 C 0.001 3.999 8 C -0.145 4.145 9 C 0.241 3.759 10 N -0.696 5.696 11 C 0.695 3.305 12 O -0.573 6.573 13 N -0.600 5.600 14 C 0.085 3.915 15 C 0.271 3.729 16 H 0.066 0.934 17 C -0.148 4.148 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.285 1.285 26 C -0.178 4.178 27 C -0.002 4.002 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.418 0.582 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.406 0.594 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.030 0.970 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.133 0.867 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -14.016 -13.549 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.791 3.209 4 O -0.951 6.951 5 O -0.951 6.951 6 C -0.797 4.797 7 C -0.019 4.019 8 C -0.166 4.166 9 C 0.142 3.858 10 N -0.344 5.344 11 C 0.396 3.604 12 O -0.450 6.450 13 N -0.334 5.334 14 C -0.059 4.059 15 C 0.172 3.828 16 H 0.084 0.916 17 C -0.206 4.206 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.200 1.200 25 H -0.211 1.211 26 C -0.200 4.200 27 C -0.022 4.022 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.244 0.756 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.151 0.849 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.476 -13.620 -14.123 23.251 hybrid contribution -0.709 1.038 1.131 1.691 sum -13.185 -12.582 -12.993 22.382 Atomic orbital electron populations 1.21481 0.78586 1.04121 1.02083 1.55362 1.16134 1.24508 1.92223 1.01616 0.72768 0.72578 0.73941 1.93570 1.78819 1.68371 1.54373 1.93596 1.30782 1.83408 1.87315 1.30556 1.08882 1.18644 1.21601 1.20789 0.95358 0.95134 0.90615 1.21577 0.98923 0.96309 0.99830 1.17923 0.94264 0.88822 0.84798 1.43208 1.10218 1.61503 1.19510 1.16006 0.84100 0.79618 0.80628 1.90891 1.18982 1.61266 1.73832 1.47669 1.08906 1.54477 1.22325 1.21540 0.82502 0.98944 1.02874 1.18958 0.84692 0.94019 0.85177 0.91600 1.22124 1.02068 0.95957 1.00493 1.21295 1.15298 0.90834 1.29253 0.92287 1.24885 0.95056 0.98625 0.95156 1.69868 1.16906 1.35318 1.30413 0.86469 0.78274 0.85011 0.77472 1.20553 1.19956 1.21061 1.20964 1.03212 1.04077 0.91785 1.20595 0.93224 0.91319 0.97104 0.91379 0.90047 0.92038 0.74848 0.84182 0.82886 0.75600 0.92991 0.93698 0.90131 0.88558 0.95048 0.96889 0.92567 0.84887 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.14 59.85 0.67 1.08 16 2 N -1.12 -7.57 6.19 -16.64 -0.10 -7.67 16 3 S 2.70 28.93 5.74 -107.50 -0.62 28.31 16 4 O -0.96 -12.57 17.00 -57.17 -0.97 -13.54 16 5 O -0.96 -13.16 17.27 -57.17 -0.99 -14.15 16 6 C -0.71 -8.27 5.95 -39.55 -0.24 -8.51 16 7 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 8 C -0.14 -2.22 8.70 -39.40 -0.34 -2.56 16 9 C 0.24 3.46 6.30 -83.69 -0.53 2.93 16 10 N -0.70 -10.32 5.22 -14.23 -0.07 -10.39 16 11 C 0.69 13.87 8.13 -86.92 -0.71 13.16 16 12 O -0.57 -13.63 13.10 5.29 0.07 -13.56 16 13 N -0.60 -12.12 2.75 -181.01 -0.50 -12.62 16 14 C 0.09 1.30 9.48 59.84 0.57 1.86 16 15 C 0.27 6.69 2.64 -69.08 -0.18 6.51 16 16 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 18 C -0.53 -13.92 8.37 -34.44 -0.29 -14.21 16 19 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 22 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.18 -2.05 9.97 -39.40 -0.39 -2.45 16 27 C 0.00 -0.02 9.51 -39.61 -0.38 -0.40 16 28 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.42 2.00 8.96 -34.47 -0.31 1.70 16 32 H 0.14 1.62 7.61 -52.48 -0.40 1.22 16 33 H 0.15 2.65 6.22 -52.48 -0.33 2.32 16 34 H 0.41 4.57 6.52 -40.82 -0.27 4.30 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.50 6.30 -51.93 -0.33 0.17 16 37 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 38 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 39 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.14 1.18 7.61 -52.48 -0.40 0.79 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -35.60 367.35 -9.45 -45.04 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.45 Total: 5.63 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.96 Total: -4.33 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.05 Total: -54.69 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.89 Total: -41.26 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 28.93 SS G_CDS: -0.62 Total: 28.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.60 -9.45 -45.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086297408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.485 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds