Wall clock time and date at job start Tue Mar 31 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50694 * 109.47474 * 119.99900 * 2 1 3 5 5 H 1.07998 * 120.00159 * 120.00363 * 4 2 1 6 6 C 1.37878 * 120.00041 * 300.00211 * 4 2 1 7 7 N 1.31513 * 120.00273 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46984 * 89.99795 * 8 6 4 10 10 H 1.48501 * 109.47239 * 210.00157 * 8 6 4 11 11 H 1.48498 * 109.46967 * 329.99894 * 8 6 4 12 12 N 1.46503 * 109.47319 * 240.00277 * 2 1 3 13 13 C 1.46497 * 119.99604 * 299.99883 * 12 2 1 14 14 C 1.34772 * 120.00137 * 119.99615 * 12 2 1 15 15 O 1.21592 * 120.00393 * 0.02562 * 14 12 2 16 16 N 1.34775 * 120.00160 * 180.02562 * 14 12 2 17 17 C 1.40195 * 120.00427 * 184.66643 * 16 14 12 18 18 C 1.38838 * 119.99206 * 324.40127 * 17 16 14 19 19 C 1.38072 * 120.00520 * 179.72141 * 18 17 16 20 20 C 1.38877 * 119.99160 * 0.58105 * 19 18 17 21 21 N 1.39926 * 120.00876 * 179.67773 * 20 19 18 22 22 S 1.65602 * 119.99562 * 314.90572 * 21 20 19 23 23 C 1.81401 * 104.45005 * 297.66494 * 22 21 20 24 24 O 1.42105 * 104.27987 * 53.73723 * 22 21 20 25 25 O 1.42093 * 104.27779 * 181.59412 * 22 21 20 26 26 C 1.38882 * 119.99029 * 359.69727 * 20 19 18 27 27 C 1.38067 * 119.99652 * 0.02562 * 26 20 19 28 28 H 1.08999 * 109.46513 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46978 * 299.99854 * 1 2 3 30 30 H 1.09000 * 109.47146 * 60.00046 * 1 2 3 31 31 H 0.96996 * 120.00417 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46962 * 269.99528 * 13 12 2 33 33 H 1.09001 * 109.47608 * 29.99556 * 13 12 2 34 34 H 1.08995 * 109.47407 * 150.00002 * 13 12 2 35 35 H 0.97003 * 119.99458 * 4.66647 * 16 14 12 36 36 H 1.08002 * 120.00042 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00719 * 180.28134 * 19 18 17 38 38 H 0.96997 * 120.00339 * 134.89648 * 21 20 19 39 39 H 1.09004 * 109.46914 * 65.02476 * 23 22 21 40 40 H 1.08993 * 109.47362 * 185.02066 * 23 22 21 41 41 H 1.08998 * 109.46907 * 305.02794 * 23 22 21 42 42 H 1.08006 * 120.00171 * 179.97438 * 26 20 19 43 43 H 1.07996 * 119.99757 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3433 -0.9493 5.1121 11 1 2.4860 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0873 1.1285 -1.8908 16 7 3.2420 -0.6707 -3.1841 17 6 4.1267 -0.0212 -4.0564 18 6 4.0022 1.3429 -4.2825 19 6 4.8769 1.9839 -5.1372 20 6 5.8739 1.2617 -5.7799 21 7 6.7563 1.9096 -6.6513 22 16 6.1766 2.9898 -7.7646 23 6 5.0889 2.0028 -8.8292 24 8 5.4178 3.9127 -6.9954 25 8 7.3302 3.4077 -8.4812 26 6 5.9947 -0.1040 -5.5580 27 6 5.1233 -0.7434 -4.6989 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7090 1.1614 3.4844 32 1 2.4159 -2.7376 -0.9717 33 1 0.6905 -2.3002 -0.9846 34 1 1.6238 -2.2852 -2.5001 35 1 2.9529 -1.5772 -3.3727 36 1 3.2235 1.9036 -3.7868 37 1 4.7829 3.0459 -5.3096 38 1 7.7076 1.7262 -6.6032 39 1 4.2407 1.6421 -8.2473 40 1 4.7286 2.6198 -9.6523 41 1 5.6437 1.1533 -9.2275 42 1 6.7697 -0.6659 -6.0581 43 1 5.2175 -1.8053 -4.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086298522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:13 Heat of formation + Delta-G solvation = -50.882813 kcal Electronic energy + Delta-G solvation = -27375.273199 eV Core-core repulsion = 23355.765267 eV Total energy + Delta-G solvation = -4019.507932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39573 -38.98059 -37.43025 -36.33951 -36.07863 -35.10063 -33.63183 -32.57366 -30.95208 -29.85091 -29.51508 -27.74735 -26.20737 -25.22703 -23.16028 -22.74051 -21.06311 -19.83602 -19.22178 -18.27161 -17.84597 -17.69959 -16.99450 -16.58492 -16.24864 -15.70749 -15.22509 -15.12707 -14.64038 -14.27605 -14.13337 -13.69458 -13.60452 -13.52346 -13.37668 -13.26302 -13.00186 -12.65058 -12.56825 -12.45044 -12.29149 -12.07773 -11.65326 -11.57395 -11.50155 -11.16590 -11.07815 -10.90576 -10.81829 -10.73548 -10.26786 -10.18559 -9.74115 -9.36241 -9.19067 -8.92190 -8.44811 -7.92613 -7.54481 -6.09139 -4.17013 -0.15157 1.25826 1.38692 2.28198 3.10000 3.26234 3.33085 3.34706 3.40687 3.53218 3.85428 3.95069 4.32872 4.36632 4.48052 4.60333 4.86398 4.92091 4.98143 5.22111 5.29367 5.36908 5.48060 5.51015 5.72659 5.93247 6.04257 6.15703 6.16867 6.33987 6.41354 6.65508 6.69879 6.76146 6.78698 6.96360 7.10801 7.17472 7.42334 7.66440 7.77809 8.02860 8.18289 8.57672 8.83593 9.14695 9.49883 10.96260 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002256 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.544677 B =12406.145460 C =12562.760702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.603 5.603 13 C 0.087 3.913 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.697 5.697 17 C 0.177 3.823 18 C -0.099 4.099 19 C -0.131 4.131 20 C 0.103 3.897 21 N -1.054 6.054 22 S 2.609 3.391 23 C -0.668 4.668 24 O -0.946 6.946 25 O -0.959 6.959 26 C -0.110 4.110 27 C -0.140 4.140 28 H 0.030 0.970 29 H 0.095 0.905 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.403 0.597 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.423 0.577 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -4.966 -22.318 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.337 5.337 13 C -0.057 4.057 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.346 5.346 17 C 0.079 3.921 18 C -0.121 4.121 19 C -0.153 4.153 20 C 0.007 3.993 21 N -0.806 5.806 22 S 2.703 3.297 23 C -0.819 4.819 24 O -0.936 6.936 25 O -0.950 6.950 26 C -0.132 4.132 27 C -0.162 4.162 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.240 0.760 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.260 0.740 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.852 -3.029 -22.000 23.240 hybrid contribution 0.338 -1.918 0.715 2.075 sum 7.190 -4.947 -21.285 23.005 Atomic orbital electron populations 1.22119 0.98192 0.99357 1.00971 1.18918 0.90659 0.94367 0.78887 0.91618 1.21310 1.31851 1.13053 0.90265 0.92326 1.24885 0.94937 0.94994 0.98954 1.69870 1.36290 1.22574 1.23822 0.86486 0.78676 0.79790 0.82351 1.20605 1.21117 1.19989 1.47623 1.50767 1.11553 1.23802 1.21506 1.02202 0.83528 0.98465 1.15999 0.79709 0.85117 0.79434 1.90883 1.62312 1.15223 1.76939 1.43055 1.48807 1.18731 1.24040 1.17713 0.90472 0.92541 0.91335 1.21388 1.00488 0.93653 0.96530 1.21860 0.95816 1.01743 0.95837 1.17342 0.94157 0.91366 0.96411 1.53217 1.16497 1.62816 1.48036 1.05060 0.75336 0.74628 0.74689 1.30460 1.17808 1.16761 1.16844 1.93602 1.73483 1.59302 1.67207 1.93619 1.47447 1.80011 1.73891 1.20785 1.00013 0.92509 0.99932 1.20732 0.94732 1.00325 1.00395 0.95120 0.88660 0.96880 0.92632 0.93189 0.90345 0.93710 0.76027 0.83189 0.82396 0.74038 0.84903 0.85184 0.85200 0.85413 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.27 6.78 2.64 -69.08 -0.18 6.60 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -13.98 8.37 -34.44 -0.29 -14.26 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.60 -12.37 2.75 -181.01 -0.50 -12.87 16 13 C 0.09 1.35 9.48 59.85 0.57 1.92 16 14 C 0.70 14.07 8.12 -86.92 -0.71 13.37 16 15 O -0.58 -13.91 13.14 5.28 0.07 -13.84 16 16 N -0.70 -10.42 5.22 -14.18 -0.07 -10.49 16 17 C 0.18 2.49 6.30 -83.59 -0.53 1.97 16 18 C -0.10 -1.53 8.69 -39.42 -0.34 -1.87 16 19 C -0.13 -1.73 9.22 -39.41 -0.36 -2.10 16 20 C 0.10 1.08 6.07 -83.69 -0.51 0.57 16 21 N -1.05 -8.47 5.68 32.45 0.18 -8.28 16 22 S 2.61 21.68 6.00 -107.50 -0.64 21.04 16 23 C -0.67 -3.28 10.78 101.05 1.09 -2.19 16 24 O -0.95 -11.49 15.08 -57.54 -0.87 -12.36 16 25 O -0.96 -10.57 18.08 -57.54 -1.04 -11.61 16 26 C -0.11 -1.02 9.96 -39.41 -0.39 -1.42 16 27 C -0.14 -1.50 9.96 -39.42 -0.39 -1.89 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 34 H 0.04 0.51 6.30 -51.93 -0.33 0.18 16 35 H 0.40 4.63 6.52 -40.82 -0.27 4.37 16 36 H 0.15 2.68 6.26 -52.49 -0.33 2.35 16 37 H 0.16 2.17 5.54 -52.49 -0.29 1.88 16 38 H 0.42 2.55 8.92 -34.47 -0.31 2.24 16 39 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -36.06 364.33 -8.95 -45.01 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.37 Total: 7.04 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.81 Total: -0.76 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.24 Total: -55.85 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.84 Total: -37.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 21.68 SS G_CDS: -0.64 Total: 21.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.06 -8.95 -45.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086298522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.873 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds