Wall clock time and date at job start Tue Mar 31 2020 23:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50694 * 109.47474 * 119.99900 * 2 1 3 5 5 H 1.07998 * 120.00159 * 120.00363 * 4 2 1 6 6 C 1.37878 * 120.00041 * 300.00211 * 4 2 1 7 7 N 1.31513 * 120.00273 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46984 * 89.99795 * 8 6 4 10 10 H 1.48501 * 109.47239 * 210.00157 * 8 6 4 11 11 H 1.48498 * 109.46967 * 329.99894 * 8 6 4 12 12 N 1.46503 * 109.47319 * 240.00277 * 2 1 3 13 13 C 1.46497 * 119.99604 * 299.99883 * 12 2 1 14 14 C 1.34772 * 120.00137 * 119.99615 * 12 2 1 15 15 O 1.21592 * 120.00393 * 0.02562 * 14 12 2 16 16 N 1.34775 * 120.00160 * 180.02562 * 14 12 2 17 17 C 1.40195 * 120.00427 * 184.66643 * 16 14 12 18 18 C 1.38838 * 119.99206 * 324.40127 * 17 16 14 19 19 C 1.38072 * 120.00520 * 179.72141 * 18 17 16 20 20 C 1.38877 * 119.99160 * 0.58105 * 19 18 17 21 21 N 1.39926 * 120.00876 * 179.67773 * 20 19 18 22 22 S 1.65602 * 119.99562 * 314.90572 * 21 20 19 23 23 C 1.81401 * 104.45005 * 297.66494 * 22 21 20 24 24 O 1.42105 * 104.27987 * 53.73723 * 22 21 20 25 25 O 1.42093 * 104.27779 * 181.59412 * 22 21 20 26 26 C 1.38882 * 119.99029 * 359.69727 * 20 19 18 27 27 C 1.38067 * 119.99652 * 0.02562 * 26 20 19 28 28 H 1.08999 * 109.46513 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46978 * 299.99854 * 1 2 3 30 30 H 1.09000 * 109.47146 * 60.00046 * 1 2 3 31 31 H 0.96996 * 120.00417 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46962 * 269.99528 * 13 12 2 33 33 H 1.09001 * 109.47608 * 29.99556 * 13 12 2 34 34 H 1.08995 * 109.47407 * 150.00002 * 13 12 2 35 35 H 0.97003 * 119.99458 * 4.66647 * 16 14 12 36 36 H 1.08002 * 120.00042 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00719 * 180.28134 * 19 18 17 38 38 H 0.96997 * 120.00339 * 134.89648 * 21 20 19 39 39 H 1.09004 * 109.46914 * 65.02476 * 23 22 21 40 40 H 1.08993 * 109.47362 * 185.02066 * 23 22 21 41 41 H 1.08998 * 109.46907 * 305.02794 * 23 22 21 42 42 H 1.08006 * 120.00171 * 179.97438 * 26 20 19 43 43 H 1.07996 * 119.99757 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3433 -0.9493 5.1121 11 1 2.4860 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0873 1.1285 -1.8908 16 7 3.2420 -0.6707 -3.1841 17 6 4.1267 -0.0212 -4.0564 18 6 4.0022 1.3429 -4.2825 19 6 4.8769 1.9839 -5.1372 20 6 5.8739 1.2617 -5.7799 21 7 6.7563 1.9096 -6.6513 22 16 6.1766 2.9898 -7.7646 23 6 5.0889 2.0028 -8.8292 24 8 5.4178 3.9127 -6.9954 25 8 7.3302 3.4077 -8.4812 26 6 5.9947 -0.1040 -5.5580 27 6 5.1233 -0.7434 -4.6989 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7090 1.1614 3.4844 32 1 2.4159 -2.7376 -0.9717 33 1 0.6905 -2.3002 -0.9846 34 1 1.6238 -2.2852 -2.5001 35 1 2.9529 -1.5772 -3.3727 36 1 3.2235 1.9036 -3.7868 37 1 4.7829 3.0459 -5.3096 38 1 7.7076 1.7262 -6.6032 39 1 4.2407 1.6421 -8.2473 40 1 4.7286 2.6198 -9.6523 41 1 5.6437 1.1533 -9.2275 42 1 6.7697 -0.6659 -6.0581 43 1 5.2175 -1.8053 -4.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086298522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:12 Heat of formation + Delta-G solvation = -78.819880 kcal Electronic energy + Delta-G solvation = -27376.484641 eV Core-core repulsion = 23355.765267 eV Total energy + Delta-G solvation = -4020.719374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69047 -40.12938 -38.24404 -37.50182 -37.09786 -36.49341 -35.08923 -34.13838 -31.89531 -31.26667 -30.30057 -28.82841 -27.60734 -27.25233 -24.29138 -23.85050 -22.50445 -20.81537 -20.48091 -19.41469 -18.74956 -18.62075 -18.50090 -17.98211 -17.27553 -16.99464 -16.53658 -16.39411 -16.09455 -15.64993 -15.09871 -14.98510 -14.56869 -14.38314 -14.34986 -14.14590 -14.00756 -13.96455 -13.74053 -13.46285 -13.26087 -13.22441 -13.08218 -12.94814 -12.89896 -12.70443 -12.59547 -12.30127 -12.16239 -12.08778 -11.91635 -11.83539 -11.18982 -11.07231 -10.64924 -10.50614 -9.89859 -9.40978 -8.74575 -8.13040 -6.29400 -0.79989 0.29088 0.44979 1.42207 1.43711 1.53209 1.60138 1.76106 2.17130 2.42899 2.77905 2.82851 3.09822 3.15255 3.22598 3.91588 4.05279 4.08986 4.14613 4.26248 4.32962 4.43962 4.55458 4.66154 4.71358 4.79962 4.90521 4.94071 5.02426 5.07230 5.15792 5.25703 5.34603 5.44915 5.48965 5.59195 5.62012 5.69594 5.96012 6.00473 6.16680 6.21155 6.27758 6.78525 7.11299 7.38132 7.65593 8.91236 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002256 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.544677 B =12406.145460 C =12562.760702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.277 3.723 3 H 0.009 0.991 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.612 5.612 13 C 0.082 3.918 14 C 0.689 3.311 15 O -0.628 6.628 16 N -0.675 5.675 17 C 0.146 3.854 18 C -0.124 4.124 19 C -0.148 4.148 20 C 0.119 3.881 21 N -1.048 6.048 22 S 2.612 3.388 23 C -0.647 4.647 24 O -0.995 6.995 25 O -0.988 6.988 26 C -0.094 4.094 27 C -0.121 4.121 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.421 0.579 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.434 0.566 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 -8.892 -24.566 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.175 3.825 3 H 0.027 0.973 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.184 1.184 12 N -0.346 5.346 13 C -0.060 4.060 14 C 0.391 3.609 15 O -0.509 6.509 16 N -0.326 5.326 17 C 0.050 3.950 18 C -0.146 4.146 19 C -0.170 4.170 20 C 0.023 3.977 21 N -0.800 5.800 22 S 2.710 3.290 23 C -0.801 4.801 24 O -0.985 6.985 25 O -0.979 6.979 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.262 0.738 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.273 0.727 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.178 0.822 42 H 0.192 0.808 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.372 -6.995 -24.286 26.624 hybrid contribution -0.065 -0.659 1.231 1.397 sum 8.307 -7.654 -23.055 25.674 Atomic orbital electron populations 1.21896 0.97045 1.00265 0.99959 1.18461 0.91458 0.91945 0.80651 0.97320 1.21578 1.31754 1.13045 0.91064 0.92060 1.25734 0.95126 0.95674 1.02024 1.70022 1.37374 1.23936 1.24406 0.85462 0.77671 0.79274 0.78622 1.21079 1.20615 1.18389 1.47455 1.51036 1.13405 1.22683 1.21781 1.02145 0.80405 1.01659 1.16212 0.79564 0.84633 0.80495 1.90858 1.64022 1.17706 1.78302 1.42639 1.48479 1.19112 1.22361 1.17941 0.92118 0.92287 0.92605 1.21122 1.00793 0.94710 0.97952 1.21736 0.97141 1.01352 0.96755 1.17333 0.93019 0.91982 0.95411 1.53043 1.16975 1.62177 1.47792 1.04749 0.75006 0.74658 0.74627 1.30273 1.16730 1.16967 1.16103 1.93553 1.74124 1.61936 1.68889 1.93580 1.49190 1.80981 1.74135 1.21241 1.00015 0.91716 0.98660 1.21090 0.92740 1.01742 0.98620 0.93063 0.91368 0.96144 0.92673 0.92415 0.90577 0.89137 0.73814 0.87345 0.83988 0.72653 0.84321 0.83167 0.82219 0.80822 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.95 71.98 0.64 -5.70 16 2 C 0.28 14.39 2.64 44.24 0.12 14.51 16 3 H 0.01 0.55 6.90 -2.39 -0.02 0.54 16 4 C -0.54 -28.94 8.37 25.60 0.21 -28.72 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.14 11.32 21.45 0.24 -52.90 16 8 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.61 -25.37 2.75 -844.85 -2.33 -27.70 16 13 C 0.08 2.38 9.48 127.77 1.21 3.59 16 14 C 0.69 28.71 8.12 179.06 1.45 30.17 16 15 O -0.63 -32.64 13.14 -4.01 -0.05 -32.69 16 16 N -0.67 -19.55 5.22 -317.03 -1.66 -21.21 16 17 C 0.15 4.00 6.30 38.09 0.24 4.24 16 18 C -0.12 -4.04 8.69 22.37 0.19 -3.85 16 19 C -0.15 -4.06 9.22 22.38 0.21 -3.85 16 20 C 0.12 2.24 6.07 38.16 0.23 2.47 16 21 N -1.05 -14.68 5.68 -51.25 -0.29 -14.97 16 22 S 2.61 40.87 6.00 -56.49 -0.34 40.53 16 23 C -0.65 -4.15 10.78 113.37 1.22 -2.92 16 24 O -1.00 -25.30 15.08 -127.65 -1.93 -27.22 16 25 O -0.99 -20.90 18.08 -127.65 -2.31 -23.20 16 26 C -0.09 -1.33 9.96 22.38 0.22 -1.11 16 27 C -0.12 -2.11 9.96 22.37 0.22 -1.89 16 28 H 0.05 2.17 6.66 -2.39 -0.02 2.16 16 29 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 2.24 6.43 -2.39 -0.02 2.23 16 34 H 0.09 1.75 6.30 -2.39 -0.02 1.73 16 35 H 0.42 8.48 6.52 -92.71 -0.60 7.88 16 36 H 0.11 4.38 6.26 -2.91 -0.02 4.36 16 37 H 0.14 4.30 5.54 -2.91 -0.02 4.28 16 38 H 0.43 4.10 8.92 -96.75 -0.86 3.23 16 39 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -86.00 364.33 -0.39 -86.39 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.39 Total: 19.84 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.63 Total: 8.15 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -4.03 Total: -116.77 kcal Atomic # 8 Polarization: -78.83 SS G_CDS: -4.29 Total: -83.12 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 40.87 SS G_CDS: -0.34 Total: 40.53 kcal Total: -86.00 -0.39 -86.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086298522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.568 kcal (2) G-P(sol) polarization free energy of solvation -85.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds