Wall clock time and date at job start Tue Mar 31 2020 23:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47342 * 239.99228 * 2 1 3 5 5 H 1.07997 * 119.99926 * 240.00295 * 4 2 1 6 6 C 1.37874 * 119.99656 * 60.00293 * 4 2 1 7 7 N 1.31515 * 120.00221 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99674 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46701 * 269.99901 * 8 6 4 10 10 H 1.48496 * 109.47192 * 30.00064 * 8 6 4 11 11 H 1.48500 * 109.46842 * 150.00167 * 8 6 4 12 12 N 1.46507 * 109.46543 * 119.99485 * 2 1 3 13 13 C 1.46488 * 120.00256 * 60.00031 * 12 2 1 14 14 C 1.34781 * 119.99450 * 239.99987 * 12 2 1 15 15 O 1.21590 * 120.00357 * 0.02562 * 14 12 2 16 16 N 1.34780 * 119.99510 * 180.02562 * 14 12 2 17 17 C 1.40196 * 119.99901 * 175.34004 * 16 14 12 18 18 C 1.38841 * 119.99448 * 215.17818 * 17 16 14 19 19 C 1.38076 * 120.00205 * 179.72340 * 18 17 16 20 20 C 1.38879 * 119.99492 * 0.54518 * 19 18 17 21 21 N 1.39914 * 120.00455 * 179.69780 * 20 19 18 22 22 S 1.65598 * 120.00318 * 314.91273 * 21 20 19 23 23 C 1.81401 * 104.44926 * 297.66297 * 22 21 20 24 24 O 1.42104 * 104.27666 * 53.73747 * 22 21 20 25 25 O 1.42104 * 104.28021 * 181.59366 * 22 21 20 26 26 C 1.38880 * 119.98896 * 359.72930 * 20 19 18 27 27 C 1.38071 * 120.00006 * 359.97438 * 26 20 19 28 28 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47378 * 300.00846 * 1 2 3 30 30 H 1.09004 * 109.46578 * 60.00802 * 1 2 3 31 31 H 0.97002 * 119.99631 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47228 * 89.99434 * 13 12 2 33 33 H 1.09000 * 109.47681 * 209.99661 * 13 12 2 34 34 H 1.09000 * 109.47320 * 329.99766 * 13 12 2 35 35 H 0.96997 * 119.99807 * 355.33681 * 16 14 12 36 36 H 1.07995 * 119.99608 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.99754 * 180.25403 * 19 18 17 38 38 H 0.97004 * 120.00092 * 134.90334 * 21 20 19 39 39 H 1.08999 * 109.46675 * 65.02337 * 23 22 21 40 40 H 1.08998 * 109.47456 * 185.01802 * 23 22 21 41 41 H 1.08996 * 109.47066 * 305.02098 * 23 22 21 42 42 H 1.08004 * 120.00026 * 179.97438 * 26 20 19 43 43 H 1.07992 * 119.99986 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9438 0.8300 -2.6034 8 14 2.3216 -1.1208 -4.0077 9 1 3.6300 -0.5464 -4.4121 10 1 2.4860 -2.5666 -3.7116 11 1 1.3434 -0.9497 -5.1118 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0930 1.4283 14 6 2.7931 -0.0354 2.0835 15 8 3.0865 1.1288 1.8912 16 7 3.2427 -0.6708 3.1838 17 6 4.1273 -0.0212 4.0561 18 6 5.1230 -0.7436 4.6998 19 6 5.9979 -0.1029 5.5546 20 6 5.8748 1.2620 5.7791 21 7 6.7573 1.9102 6.6501 22 16 7.1223 1.2313 8.1157 23 6 5.5367 1.1727 8.9950 24 8 7.5630 -0.0808 7.7940 25 8 7.9976 2.1685 8.7280 26 6 4.8751 1.9833 5.1395 27 6 4.0042 1.3435 4.2801 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 0.7092 1.1611 -3.4845 32 1 2.4156 -2.7376 0.9720 33 1 1.6237 -2.2850 2.5005 34 1 0.6904 -2.3001 0.9849 35 1 2.9541 -1.5775 3.3721 36 1 5.2163 -1.8057 4.5282 37 1 6.7750 -0.6642 6.0521 38 1 7.1554 2.7573 6.3954 39 1 4.8590 0.4940 8.4770 40 1 5.6985 0.8177 10.0128 41 1 5.0999 2.1709 9.0234 42 1 4.7789 3.0448 5.3143 43 1 3.2266 1.9043 3.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086298525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:16 Heat of formation + Delta-G solvation = -51.608294 kcal Electronic energy + Delta-G solvation = -27305.354590 eV Core-core repulsion = 23285.815199 eV Total energy + Delta-G solvation = -4019.539391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40363 -38.99127 -37.46519 -36.37794 -36.09258 -35.11243 -33.64345 -32.58272 -30.95550 -29.87173 -29.52560 -27.74705 -26.21525 -25.24113 -23.22939 -22.65392 -21.11722 -19.86718 -19.22906 -18.07609 -17.97800 -17.80899 -16.96260 -16.62728 -16.24054 -15.74215 -15.25459 -15.22637 -14.57610 -14.27833 -14.10522 -13.72310 -13.66934 -13.60846 -13.36259 -13.19297 -12.91081 -12.66483 -12.63676 -12.48624 -12.31414 -12.02468 -11.73052 -11.62018 -11.57604 -11.38279 -11.08002 -10.87356 -10.75403 -10.59391 -10.28543 -10.19566 -9.79774 -9.40119 -9.20581 -8.93212 -8.46154 -7.92177 -7.55399 -6.10613 -4.18364 -0.18046 1.25413 1.39161 2.25413 3.09333 3.25592 3.32404 3.34351 3.37315 3.52523 3.81592 3.94024 4.31843 4.34748 4.46658 4.57653 4.79817 5.00647 5.09232 5.20818 5.28041 5.33405 5.47172 5.56210 5.64621 5.92958 6.03844 6.11101 6.17596 6.38338 6.47922 6.56921 6.68544 6.73899 6.75089 6.95183 7.09359 7.16771 7.40364 7.65255 7.76212 8.01222 8.16749 8.56228 8.82267 9.12894 9.48632 10.94761 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027113 B = 0.002165 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.458230 B =12928.056596 C =13007.348212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.603 5.603 13 C 0.087 3.913 14 C 0.696 3.304 15 O -0.579 6.579 16 N -0.697 5.697 17 C 0.176 3.824 18 C -0.134 4.134 19 C -0.132 4.132 20 C 0.103 3.897 21 N -1.054 6.054 22 S 2.611 3.389 23 C -0.668 4.668 24 O -0.950 6.950 25 O -0.959 6.959 26 C -0.109 4.109 27 C -0.105 4.105 28 H 0.030 0.970 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.424 0.576 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 -2.134 21.752 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.337 5.337 13 C -0.057 4.057 14 C 0.398 3.602 15 O -0.456 6.456 16 N -0.346 5.346 17 C 0.079 3.921 18 C -0.156 4.156 19 C -0.154 4.154 20 C 0.007 3.993 21 N -0.806 5.806 22 S 2.704 3.296 23 C -0.819 4.819 24 O -0.940 6.940 25 O -0.949 6.949 26 C -0.131 4.131 27 C -0.127 4.127 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.240 0.760 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.261 0.739 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.093 -1.621 21.719 22.616 hybrid contribution -0.421 -0.512 -0.994 1.195 sum 5.672 -2.133 20.725 21.592 Atomic orbital electron populations 1.22121 0.98196 0.99379 1.00938 1.18917 0.90650 0.94334 0.78908 0.91659 1.21316 1.31833 1.13054 0.90259 0.92298 1.24883 0.94927 0.94997 0.98965 1.69874 1.36328 1.22601 1.23809 0.86483 0.78668 0.79832 0.82314 1.20599 1.19957 1.21118 1.47626 1.50740 1.11583 1.23782 1.21512 1.02222 0.83498 0.98514 1.15988 0.79655 0.85100 0.79415 1.90864 1.62472 1.15267 1.77024 1.43057 1.48782 1.18733 1.24050 1.17716 0.90620 0.92443 0.91291 1.20807 0.94393 1.00511 0.99860 1.21644 1.00598 0.93574 0.99580 1.17329 0.92656 0.91879 0.97420 1.53202 1.58242 1.36427 1.32685 1.04999 0.76644 0.74369 0.73569 1.30458 1.24424 1.12103 1.14889 1.93575 1.79094 1.39607 1.81743 1.93625 1.62049 1.63124 1.76117 1.21036 0.93996 1.00126 0.97928 1.21340 1.00648 0.93794 0.96885 0.95099 0.96921 0.88656 0.92647 0.93133 0.93669 0.90339 0.75967 0.85181 0.82451 0.73901 0.84932 0.85209 0.85081 0.85341 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.06 16 2 C 0.27 6.73 2.64 -69.08 -0.18 6.55 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.66 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.60 -12.29 2.75 -181.00 -0.50 -12.79 16 13 C 0.09 1.34 9.48 59.84 0.57 1.91 16 14 C 0.70 13.93 8.13 -86.91 -0.71 13.22 16 15 O -0.58 -13.67 13.12 5.29 0.07 -13.60 16 16 N -0.70 -10.41 5.22 -14.17 -0.07 -10.49 16 17 C 0.18 2.49 6.30 -83.58 -0.53 1.96 16 18 C -0.13 -1.57 9.96 -39.42 -0.39 -1.97 16 19 C -0.13 -1.49 9.22 -39.40 -0.36 -1.85 16 20 C 0.10 1.07 6.07 -83.69 -0.51 0.57 16 21 N -1.05 -8.45 5.68 32.45 0.18 -8.26 16 22 S 2.61 20.29 6.00 -107.50 -0.64 19.65 16 23 C -0.67 -3.10 10.78 101.05 1.09 -2.02 16 24 O -0.95 -10.29 15.08 -57.54 -0.87 -11.16 16 25 O -0.96 -10.30 18.08 -57.54 -1.04 -11.34 16 26 C -0.11 -1.23 9.96 -39.41 -0.39 -1.62 16 27 C -0.11 -1.51 8.69 -39.42 -0.34 -1.85 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.52 6.30 -51.93 -0.33 0.19 16 34 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.40 4.70 6.52 -40.82 -0.27 4.44 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.16 1.74 5.54 -52.49 -0.29 1.45 16 38 H 0.42 2.71 8.92 -34.47 -0.31 2.41 16 39 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.15 2.46 6.24 -52.49 -0.33 2.13 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -35.49 364.32 -8.95 -44.44 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.37 Total: 7.03 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.81 Total: -0.72 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.24 Total: -55.58 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.84 Total: -36.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 20.29 SS G_CDS: -0.64 Total: 19.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.49 -8.95 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086298525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.173 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds