Wall clock time and date at job start Tue Mar 31 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47496 * 2 1 4 4 C 1.50701 * 109.46906 * 239.99794 * 2 1 3 5 5 C 1.38242 * 120.00021 * 104.98720 * 4 2 1 6 6 C 1.38231 * 120.00351 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99502 * 0.02562 * 6 5 4 8 8 S 1.76205 * 119.99691 * 179.97438 * 7 6 5 9 9 N 1.65607 * 107.21568 * 90.00137 * 8 7 6 10 10 O 1.42098 * 106.40272 * 336.46655 * 8 7 6 11 11 O 1.42099 * 106.40285 * 203.54005 * 8 7 6 12 12 C 1.38234 * 120.00730 * 0.25490 * 7 6 5 13 13 C 1.38234 * 120.00173 * 285.00560 * 4 2 1 14 14 N 1.46898 * 109.46799 * 120.00134 * 2 1 3 15 15 C 1.46898 * 110.99878 * 307.82982 * 14 2 1 16 16 C 1.46911 * 110.99651 * 183.87790 * 14 2 1 17 17 C 1.50703 * 109.46639 * 189.99961 * 16 14 2 18 18 O 1.21284 * 120.00190 * 0.02562 * 17 16 14 19 19 N 1.34784 * 119.99537 * 179.97438 * 17 16 14 20 20 C 1.37090 * 119.99666 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00408 * 359.97438 * 20 19 17 22 22 C 1.38958 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99648 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00181 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46737 * 60.00045 * 24 22 20 26 26 H 1.48494 * 109.47015 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47035 * 299.99911 * 24 22 20 28 28 H 1.09000 * 109.47015 * 300.00426 * 1 2 3 29 29 H 1.09001 * 109.46908 * 59.99900 * 1 2 3 30 30 H 1.08997 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99304 * 359.97438 * 5 4 2 32 32 H 1.07995 * 120.00402 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99895 * 0.02562 * 9 8 7 34 34 H 0.96996 * 119.99858 * 179.97438 * 9 8 7 35 35 H 1.07989 * 120.00268 * 179.72676 * 12 7 6 36 36 H 1.07996 * 120.00043 * 0.02562 * 13 4 2 37 37 H 1.08996 * 109.46992 * 65.65624 * 15 14 2 38 38 H 1.09004 * 109.46702 * 185.65711 * 15 14 2 39 39 H 1.09001 * 109.47133 * 305.65000 * 15 14 2 40 40 H 1.08998 * 109.47027 * 309.99592 * 16 14 2 41 41 H 1.08993 * 109.47137 * 69.99974 * 16 14 2 42 42 H 0.96998 * 119.99554 * 359.97438 * 19 17 16 43 43 H 0.96999 * 119.99975 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.5546 0.0168 -2.2837 6 6 3.0158 -0.6348 -3.4122 7 6 2.9543 -2.0138 -3.4876 8 16 3.5416 -2.8444 -4.9263 9 7 5.1457 -3.1751 -4.6809 10 8 3.4843 -1.8999 -5.9864 11 8 2.8748 -4.0986 -4.9658 12 6 2.4267 -2.7407 -2.4369 13 6 1.9705 -2.0893 -1.3061 14 7 2.0196 -0.6925 1.1994 15 6 1.4020 -0.1428 2.4136 16 6 3.4853 -0.6323 1.2806 17 6 3.9658 -1.5507 2.3746 18 8 3.1662 -2.1926 3.0224 19 7 5.2843 -1.6596 2.6323 20 6 5.7214 -2.4954 3.6271 21 1 5.0094 -3.0664 4.2046 22 6 7.0807 -2.6073 3.8933 23 7 7.9470 -1.9122 3.1910 24 14 7.6764 -3.7456 5.2492 25 1 7.2540 -5.1372 4.9484 26 1 9.1579 -3.6853 5.3309 27 1 7.0909 -3.3199 6.5458 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.6022 1.0941 -2.2249 32 1 3.4235 -0.0667 -4.2352 33 1 5.5743 -2.9097 -3.8522 34 1 5.6563 -3.6349 -5.3655 35 1 2.3747 -3.8176 -2.4977 36 1 1.5618 -2.6575 -0.4836 37 1 0.3325 -0.3526 2.4041 38 1 1.8549 -0.6031 3.2918 39 1 1.5607 0.9351 2.4459 40 1 3.9150 -0.9449 0.3290 41 1 3.7952 0.3890 1.5014 42 1 5.9237 -1.1471 2.1134 43 1 8.8959 -1.9905 3.3765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102823014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:24 Heat of formation + Delta-G solvation = -73.823195 kcal Electronic energy + Delta-G solvation = -27643.136560 eV Core-core repulsion = 23622.633858 eV Total energy + Delta-G solvation = -4020.502702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02888 -38.48719 -37.26974 -36.81719 -35.96163 -33.99095 -33.34952 -32.38065 -31.30605 -31.18172 -29.94833 -27.56416 -25.74449 -24.21166 -23.26033 -22.80409 -20.29735 -19.65780 -19.20391 -18.55089 -17.89763 -17.53504 -16.72144 -16.43364 -16.05952 -15.58935 -15.44521 -14.86110 -14.70310 -14.68568 -14.28621 -13.81911 -13.73454 -13.60889 -13.36572 -13.17876 -12.80996 -12.31638 -12.25629 -12.22976 -12.10822 -12.01838 -11.96747 -11.59519 -11.52322 -11.40926 -11.23915 -11.14767 -10.93947 -10.69213 -10.66598 -10.47844 -10.25829 -9.51306 -9.33483 -9.13758 -8.52356 -8.04409 -7.95705 -6.46266 -3.87157 0.23110 0.63048 1.19739 2.94040 3.16496 3.22789 3.25270 3.27037 3.59337 3.83300 3.88508 4.17996 4.34027 4.45030 4.73788 4.76205 5.00473 5.07286 5.13050 5.20388 5.22401 5.37319 5.45500 5.56164 5.63134 5.63298 5.71637 5.80945 5.82764 5.85808 5.89078 5.96179 6.06347 6.08500 6.21304 6.37915 6.48680 6.71306 6.82571 7.15881 7.26658 7.50592 8.01117 8.56619 9.13329 9.49162 10.00781 10.71318 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.003317 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.287314 B = 8438.988997 C =10475.742441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 H 0.051 0.949 4 C -0.014 4.014 5 C -0.140 4.140 6 C -0.022 4.022 7 C -0.679 4.679 8 S 2.704 3.296 9 N -1.251 6.251 10 O -0.970 6.970 11 O -0.967 6.967 12 C -0.020 4.020 13 C -0.107 4.107 14 N -0.510 5.510 15 C 0.022 3.978 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.419 0.581 34 H 0.419 0.581 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.015 0.985 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.391 0.609 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 5.015 -13.806 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.000 4.000 3 H 0.069 0.931 4 C -0.015 4.015 5 C -0.159 4.159 6 C -0.041 4.041 7 C -0.768 4.768 8 S 2.794 3.206 9 N -0.925 5.925 10 O -0.959 6.959 11 O -0.956 6.956 12 C -0.040 4.040 13 C -0.126 4.126 14 N -0.234 5.234 15 C -0.126 4.126 16 C -0.088 4.088 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.247 0.753 34 H 0.249 0.751 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.033 0.967 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.224 0.776 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.002 3.920 -14.173 17.242 hybrid contribution 1.616 0.929 1.170 2.201 sum -7.386 4.849 -13.003 15.721 Atomic orbital electron populations 1.21899 0.92815 1.03289 1.02031 1.20746 0.96116 0.94826 0.88277 0.93079 1.20237 0.92661 0.94364 0.94226 1.21168 1.00730 1.00291 0.93730 1.20846 0.93848 0.92080 0.97318 1.30393 1.20074 1.05515 1.20817 1.01362 0.72421 0.73725 0.73075 1.53036 1.31255 1.77894 1.30360 1.93588 1.85998 1.63620 1.52678 1.93601 1.73284 1.42661 1.86048 1.21031 0.91654 1.00283 0.91004 1.21309 0.99269 0.94181 0.97795 1.61661 1.05333 1.54896 1.01539 1.22564 1.00070 0.96100 0.93822 1.21892 0.88269 0.98571 1.00052 1.19665 0.83303 0.86948 0.87129 1.90490 1.53916 1.48889 1.52801 1.41856 1.05204 1.40141 1.32759 1.19645 0.91708 1.20292 1.11298 0.87952 1.25250 0.95661 0.98127 0.98764 1.69600 1.02760 1.41273 1.40670 0.85927 0.77298 0.80298 0.80761 1.19863 1.20971 1.19918 0.91526 0.92131 0.91221 0.85134 0.84196 0.75312 0.75121 0.84023 0.83675 0.91553 0.88551 0.96662 0.89626 0.93489 0.77562 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.63 37.16 0.32 -1.11 16 2 C 0.11 1.29 2.27 -68.86 -0.16 1.13 16 3 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 4 C -0.01 -0.17 3.54 -104.62 -0.37 -0.54 16 5 C -0.14 -1.46 9.67 -39.58 -0.38 -1.84 16 6 C -0.02 -0.22 9.52 -39.59 -0.38 -0.60 16 7 C -0.68 -7.41 5.94 -39.58 -0.24 -7.64 16 8 S 2.70 27.85 6.28 -107.50 -0.68 27.18 16 9 N -1.25 -8.99 9.55 60.35 0.58 -8.42 16 10 O -0.97 -12.42 17.28 -57.17 -0.99 -13.40 16 11 O -0.97 -13.00 17.28 -57.17 -0.99 -13.99 16 12 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 13 C -0.11 -1.36 9.06 -39.58 -0.36 -1.72 16 14 N -0.51 -7.74 3.81 -237.72 -0.91 -8.65 16 15 C 0.02 0.33 8.45 60.06 0.51 0.83 16 16 C 0.04 0.74 5.27 -4.97 -0.03 0.71 16 17 C 0.44 10.01 7.42 -10.98 -0.08 9.93 16 18 O -0.58 -14.79 13.96 5.55 0.08 -14.71 16 19 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 21 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.89 13.05 55.50 0.72 -23.16 16 24 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 28 H 0.07 0.63 6.44 -51.93 -0.33 0.29 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.13 1.07 8.00 -52.49 -0.42 0.65 16 32 H 0.14 1.20 7.62 -52.49 -0.40 0.80 16 33 H 0.42 2.47 8.92 -34.48 -0.31 2.16 16 34 H 0.42 2.27 8.96 -34.47 -0.31 1.96 16 35 H 0.14 1.54 7.61 -52.49 -0.40 1.14 16 36 H 0.15 1.98 7.88 -52.49 -0.41 1.57 16 37 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 38 H 0.10 1.78 5.79 -51.93 -0.30 1.48 16 39 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 40 H 0.09 1.38 6.80 -51.93 -0.35 1.02 16 41 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -34.90 370.24 -8.97 -43.87 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.51 Total: 13.18 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.78 Total: -9.20 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.34 Total: -54.06 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.90 Total: -42.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 27.85 SS G_CDS: -0.68 Total: 27.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.90 -8.97 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102823014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.954 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds