Wall clock time and date at job start Tue Mar 31 2020 23:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47383 * 2 1 4 4 C 1.46492 * 120.00072 * 270.00376 * 3 2 1 5 5 C 1.50706 * 109.46953 * 269.99237 * 4 3 2 6 6 H 1.07992 * 120.00004 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99796 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00440 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99775 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46794 * 90.00231 * 9 7 5 11 11 H 1.48496 * 109.47099 * 210.00431 * 9 7 5 12 12 H 1.48504 * 109.47026 * 330.00604 * 9 7 5 13 13 C 1.34779 * 119.99904 * 90.00024 * 3 2 1 14 14 O 1.21274 * 120.00190 * 180.02562 * 13 3 2 15 15 C 1.50709 * 120.00075 * 359.97438 * 13 3 2 16 16 S 1.81391 * 109.47220 * 180.02562 * 15 13 3 17 17 C 1.81401 * 103.00087 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47154 * 180.02562 * 17 16 15 19 19 O 1.21274 * 120.00121 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99988 * 180.02562 * 18 17 16 21 21 C 1.39505 * 119.99932 * 179.72612 * 20 18 17 22 22 C 1.42025 * 126.89307 * 359.97438 * 21 20 18 23 23 C 1.35247 * 103.95051 * 179.97438 * 22 21 20 24 24 C 1.50702 * 126.68936 * 180.02562 * 23 22 21 25 25 O 1.34084 * 106.61258 * 0.02562 * 23 22 21 26 26 N 1.20913 * 111.74662 * 359.74957 * 25 23 22 27 27 H 1.08993 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46954 * 299.99880 * 1 2 3 29 29 H 1.09003 * 109.46766 * 59.99790 * 1 2 3 30 30 H 1.08997 * 109.47248 * 240.00399 * 2 1 3 31 31 H 1.08998 * 109.47449 * 120.00419 * 2 1 3 32 32 H 1.09001 * 109.47421 * 29.99598 * 4 3 2 33 33 H 1.09005 * 109.47560 * 149.99819 * 4 3 2 34 34 H 0.96996 * 120.00314 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46757 * 59.99919 * 15 13 3 36 36 H 1.08998 * 109.46805 * 300.00617 * 15 13 3 37 37 H 1.08998 * 109.46678 * 60.00209 * 17 16 15 38 38 H 1.09002 * 109.47098 * 300.00004 * 17 16 15 39 39 H 0.97000 * 119.99339 * 0.02562 * 20 18 17 40 40 H 1.07993 * 128.02464 * 359.97236 * 22 21 20 41 41 H 1.08999 * 109.47216 * 90.00353 * 24 23 22 42 42 H 1.08999 * 109.46863 * 210.00047 * 24 23 22 43 43 H 1.08997 * 109.47537 * 329.99651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6859 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1258 -3.6180 9 14 5.9132 2.0957 -3.4174 10 1 5.9761 0.8746 -4.2601 11 1 6.3924 3.2628 -4.2006 12 1 6.7736 1.9159 -2.2204 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1673 15 6 1.9913 1.3063 2.4724 16 16 2.3837 2.4178 3.8511 17 6 2.0243 1.4011 5.3099 18 6 2.3046 2.1971 6.5584 19 8 2.7067 3.3380 6.4726 20 7 2.1085 1.6410 7.7704 21 6 2.3734 2.3760 8.9261 22 6 2.8512 3.7116 8.9964 23 6 2.9406 3.9566 10.3235 24 6 3.3986 5.2365 10.9740 25 8 2.5421 2.8386 10.9473 26 7 2.2273 1.9751 10.1617 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1411 -1.1383 34 1 3.6752 3.5163 -4.4439 35 1 2.6211 0.4186 2.5303 36 1 0.9432 1.0125 2.5298 37 1 2.6540 0.5115 5.2967 38 1 0.9756 1.1043 5.2965 39 1 1.7872 0.7284 7.8389 40 1 3.0882 4.3772 8.1796 41 1 2.5413 5.8907 11.1323 42 1 3.8647 5.0100 11.9330 43 1 4.1212 5.7344 10.3275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:10 Heat of formation + Delta-G solvation = 4.359787 kcal Electronic energy + Delta-G solvation = -25992.443532 eV Core-core repulsion = 21975.331099 eV Total energy + Delta-G solvation = -4017.112433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.18589 -40.38570 -39.06742 -35.98019 -35.39044 -33.97960 -32.88453 -32.66685 -30.44064 -30.19177 -29.69637 -28.15573 -26.69345 -24.12862 -23.11259 -22.72502 -22.03855 -21.11493 -18.67099 -18.01214 -17.81680 -17.42774 -17.02458 -16.67049 -16.35306 -16.20512 -16.10438 -15.28596 -14.91351 -14.54390 -14.22037 -13.95059 -13.87670 -13.71390 -13.56196 -13.48898 -13.28452 -12.95728 -12.81041 -12.58109 -12.06418 -12.02906 -11.99180 -11.67567 -11.57801 -11.22641 -10.94661 -10.81154 -10.57585 -10.51662 -10.15690 -9.89491 -9.73247 -9.67006 -9.23453 -9.09716 -8.45274 -7.78096 -7.57878 -6.06217 -4.11107 1.05341 1.15062 1.61956 2.22481 2.41911 2.43407 2.81212 3.25683 3.29396 3.36699 3.41566 3.83241 3.85440 4.17575 4.43311 4.53581 4.58063 4.71320 4.79708 4.88537 4.89708 5.00591 5.07049 5.14227 5.19605 5.28410 5.36206 5.44582 5.54059 5.61567 5.68022 5.92960 6.01782 6.14942 6.39662 6.60174 6.98052 7.39885 7.47143 7.48386 7.89512 7.95690 8.19919 8.29618 8.83954 8.99022 9.53983 11.01899 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.001945 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.170241 B =14390.658094 C =15302.109959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.523 3.477 14 O -0.519 6.519 15 C -0.144 4.144 16 S -0.094 6.094 17 C -0.153 4.153 18 C 0.543 3.457 19 O -0.484 6.484 20 N -0.632 5.632 21 C 0.250 3.750 22 C -0.226 4.226 23 C -0.023 4.023 24 C -0.074 4.074 25 O 0.095 5.905 26 N -0.392 5.392 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.420 0.580 40 H 0.192 0.808 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -6.079 25.784 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.307 3.693 14 O -0.395 6.395 15 C -0.295 4.295 16 S 0.130 5.870 17 C -0.304 4.304 18 C 0.329 3.671 19 O -0.354 6.354 20 N -0.285 5.285 21 C 0.000 4.000 22 C -0.249 4.249 23 C -0.086 4.086 24 C -0.131 4.131 25 O 0.035 5.965 26 N -0.109 5.109 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.257 0.743 40 H 0.209 0.791 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.247 -4.583 25.993 26.910 hybrid contribution 0.409 -1.759 -0.960 2.046 sum -4.839 -6.342 25.033 26.273 Atomic orbital electron populations 1.22231 0.96694 1.01462 1.02440 1.21446 0.93567 0.84145 1.02753 1.48195 1.63666 1.13271 1.07332 1.19320 0.96415 0.93725 0.77713 1.21415 0.96860 1.32064 1.06296 0.92433 1.24938 0.97903 0.94869 0.96400 1.69925 1.35723 1.33306 1.14316 0.86490 0.84636 0.77668 0.78605 1.20671 1.21044 1.19848 1.19286 0.79342 0.86799 0.83923 1.90735 1.44926 1.17470 1.86383 1.23829 1.05860 1.02775 0.97046 1.88392 1.88013 1.17359 0.93198 1.23527 1.07134 1.03592 0.96154 1.19874 0.77053 0.87230 0.82972 1.90737 1.41646 1.17336 1.85662 1.42447 1.66509 1.17334 1.02181 1.20502 1.00785 0.91892 0.86779 1.22776 1.08760 0.95952 0.97428 1.24466 1.00629 0.91409 0.92128 1.20368 1.02403 0.88883 1.01490 1.84786 1.62323 1.17535 1.31890 1.74030 1.24284 1.13329 0.99208 0.92100 0.93141 0.91838 0.89686 0.91883 0.94804 0.93719 0.92675 0.87650 0.87747 0.86546 0.86595 0.74343 0.79099 0.89198 0.89721 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -12.03 2.46 -175.06 -0.43 -12.46 16 4 C 0.25 6.34 5.16 -5.20 -0.03 6.32 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.52 10.61 7.69 -10.98 -0.08 10.53 16 14 O -0.52 -13.18 15.44 5.56 0.09 -13.09 16 15 C -0.14 -1.99 4.98 36.01 0.18 -1.81 16 16 S -0.09 -1.40 20.01 -107.50 -2.15 -3.55 16 17 C -0.15 -1.32 6.42 36.00 0.23 -1.09 16 18 C 0.54 5.82 7.81 -10.98 -0.09 5.74 16 19 O -0.48 -7.01 13.15 5.56 0.07 -6.94 16 20 N -0.63 -5.61 5.42 -11.44 -0.06 -5.68 16 21 C 0.25 2.76 8.18 -154.82 -1.27 1.49 16 22 C -0.23 -2.43 9.79 -39.20 -0.38 -2.81 16 23 C -0.02 -0.19 7.48 -35.37 -0.26 -0.46 16 24 C -0.07 -0.32 10.45 36.01 0.38 0.06 16 25 O 0.09 0.96 11.19 17.06 0.19 1.15 16 26 N -0.39 -4.41 12.10 31.19 0.38 -4.03 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.11 1.20 7.40 -51.93 -0.38 0.82 16 36 H 0.10 1.13 7.18 -51.92 -0.37 0.76 16 37 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.42 2.33 8.82 -40.82 -0.36 1.97 16 40 H 0.19 2.21 6.22 -52.49 -0.33 1.88 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -37.36 382.85 -7.70 -45.06 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.88 Total: -1.66 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.39 Total: 4.32 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.62 Total: -47.87 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.35 Total: -18.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.15 Total: -3.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.36 -7.70 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds