Wall clock time and date at job start Tue Mar 31 2020 23:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00386 * 2 1 4 4 C 1.52998 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47418 * 65.00127 * 4 3 2 6 6 C 1.46501 * 120.00491 * 83.66163 * 5 4 3 7 7 C 1.50700 * 109.46636 * 90.00324 * 6 5 4 8 8 H 1.07993 * 120.00313 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99603 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99935 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99849 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47340 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47070 * 119.99675 * 11 9 7 14 14 H 1.48504 * 109.46926 * 239.99642 * 11 9 7 15 15 C 1.34781 * 119.99687 * 263.66597 * 5 4 3 16 16 O 1.21284 * 120.00090 * 183.91400 * 15 5 4 17 17 C 1.50700 * 120.00059 * 3.91908 * 15 5 4 18 18 H 1.09002 * 109.47254 * 40.73916 * 17 15 5 19 19 C 1.53002 * 109.47031 * 280.74097 * 17 15 5 20 20 O 1.42898 * 109.47324 * 160.73868 * 17 15 5 21 21 C 1.35922 * 117.00219 * 203.39701 * 20 17 15 22 22 C 1.38723 * 120.04060 * 177.74117 * 21 20 17 23 23 C 1.38145 * 119.95102 * 179.78809 * 22 21 20 24 24 C 1.38364 * 120.04646 * 0.46692 * 23 22 21 25 25 Cl 1.73602 * 119.95764 * 179.76870 * 24 23 22 26 26 C 1.38360 * 120.08538 * 359.78072 * 24 23 22 27 27 C 1.38143 * 120.04230 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47693 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47300 * 300.00668 * 1 2 3 30 30 H 1.09004 * 109.47031 * 59.99933 * 1 2 3 31 31 H 1.09001 * 109.47384 * 59.99483 * 3 2 1 32 32 H 1.09003 * 109.47051 * 299.99934 * 3 2 1 33 33 H 1.08999 * 109.46862 * 304.99409 * 4 3 2 34 34 H 1.08999 * 109.47003 * 184.99811 * 4 3 2 35 35 H 1.08996 * 109.47188 * 210.00146 * 6 5 4 36 36 H 1.08995 * 109.46652 * 330.00785 * 6 5 4 37 37 H 0.97009 * 119.99567 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47013 * 294.00965 * 19 17 15 39 39 H 1.09000 * 109.47104 * 54.00778 * 19 17 15 40 40 H 1.09002 * 109.46820 * 174.01055 * 19 17 15 41 41 H 1.07999 * 120.02376 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.97529 * 180.22705 * 23 22 21 43 43 H 1.07997 * 119.98239 * 180.02562 * 26 24 23 44 44 H 1.07998 * 120.02527 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1547 1.3833 -2.4521 7 6 5.5698 1.8991 -2.5030 8 1 6.2666 1.6425 -1.7189 9 6 5.9745 2.6994 -3.5503 10 7 5.1257 3.0122 -4.5049 11 14 7.7287 3.3382 -3.6138 12 1 8.4780 2.8460 -2.4300 13 1 8.3873 2.8538 -4.8535 14 1 7.7153 4.8232 -3.6083 15 6 4.2188 -0.7613 -1.2971 16 8 4.6519 -1.2635 -2.3126 17 6 3.9514 -1.6188 -0.0871 18 1 3.0191 -1.3045 0.3822 19 6 5.1014 -1.4661 0.9105 20 8 3.8459 -2.9868 -0.4866 21 6 3.1469 -3.8166 0.3321 22 6 2.9651 -5.1465 -0.0181 23 6 2.2581 -5.9894 0.8175 24 6 1.7233 -5.5056 1.9983 25 17 0.8301 -6.5654 3.0437 26 6 1.8992 -4.1782 2.3469 27 6 2.6098 -3.3334 1.5164 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8507 0.5684 0.8428 34 1 3.9785 2.1763 0.0902 35 1 3.9563 0.7787 -3.3370 36 1 3.4622 2.2245 -2.4238 37 1 5.4106 3.5750 -5.2419 38 1 6.0135 -1.8788 0.4795 39 1 5.2507 -0.4097 1.1339 40 1 4.8591 -2.0010 1.8289 41 1 3.3792 -5.5236 -0.9415 42 1 2.1194 -7.0257 0.5469 43 1 1.4814 -3.8025 3.2691 44 1 2.7466 -2.2973 1.7886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:46 Heat of formation + Delta-G solvation = -91.584441 kcal Electronic energy + Delta-G solvation = -28230.358204 eV Core-core repulsion = 24174.748859 eV Total energy + Delta-G solvation = -4055.609345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57208 -39.17974 -37.83872 -37.39170 -36.26423 -34.96506 -32.91997 -31.94957 -31.00247 -29.67656 -29.51428 -27.24012 -26.28356 -24.54179 -23.36558 -22.98111 -22.55771 -21.51118 -18.77180 -18.44027 -16.86239 -16.75968 -16.54927 -16.35418 -15.81546 -15.60708 -15.31253 -15.19914 -14.78669 -14.58598 -14.34236 -14.01776 -13.71535 -13.47755 -13.18321 -12.90022 -12.61096 -12.56998 -12.30977 -12.23983 -12.05447 -11.81182 -11.66115 -11.59788 -11.24419 -11.23516 -11.09938 -10.87836 -10.80840 -10.65706 -10.52023 -10.18343 -9.71483 -9.59511 -9.27422 -8.87728 -8.47868 -8.17032 -7.75681 -6.08499 -4.13325 1.07713 1.11478 2.01824 2.91345 3.27229 3.32330 3.36213 3.40981 3.49903 3.75768 4.01388 4.41349 4.58013 4.65357 4.79899 4.96001 5.05405 5.11727 5.18186 5.21013 5.21964 5.26341 5.32049 5.37469 5.46049 5.51909 5.60729 5.63473 5.68798 5.75296 5.83017 5.87943 6.01171 6.07790 6.14794 6.20737 6.43793 6.92657 7.13958 7.33888 7.39509 7.49677 7.87864 8.17587 8.29452 8.85489 9.02076 9.52096 10.99617 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002795 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.579791 B =10017.182581 C =10798.414823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.039 3.961 4 C 0.104 3.896 5 N -0.589 5.589 6 C 0.249 3.751 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.522 3.478 16 O -0.518 6.518 17 C 0.056 3.944 18 H 0.116 0.884 19 C -0.178 4.178 20 O -0.280 6.280 21 C 0.149 3.851 22 C -0.143 4.143 23 C -0.070 4.070 24 C -0.082 4.082 25 Cl -0.081 7.081 26 C -0.068 4.068 27 C -0.198 4.198 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -10.758 16.859 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.039 4.039 4 C -0.021 4.021 5 N -0.323 5.323 6 C 0.130 3.870 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.726 3.274 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.306 3.694 16 O -0.393 6.393 17 C -0.003 4.003 18 H 0.133 0.867 19 C -0.236 4.236 20 O -0.192 6.192 21 C 0.102 3.898 22 C -0.162 4.162 23 C -0.089 4.089 24 C -0.108 4.108 25 Cl -0.052 7.052 26 C -0.087 4.087 27 C -0.217 4.217 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.647 -11.201 16.011 21.792 hybrid contribution 0.506 0.829 0.179 0.988 sum -9.141 -10.371 16.191 21.290 Atomic orbital electron populations 1.22697 0.81279 1.02452 0.99857 1.87788 1.19599 1.28267 1.95433 1.23182 0.94987 0.84819 1.00904 1.21738 0.91542 1.00938 0.87848 1.48030 1.65372 1.06573 1.12289 1.19302 0.96780 0.89394 0.81501 1.21456 0.96591 1.30148 1.08302 0.92290 1.24936 0.97713 0.96198 0.95240 1.69942 1.34814 1.37197 1.11366 0.86443 0.84537 0.78251 0.78193 1.19764 1.20855 1.20998 1.19628 0.78946 0.82673 0.88120 1.90705 1.43413 1.72499 1.32701 1.22626 1.01478 0.80160 0.96048 0.86715 1.22391 0.99010 1.03700 0.98472 1.86249 1.67557 1.19176 1.46180 1.19226 0.90462 0.90765 0.89324 1.20426 1.03131 0.90842 1.01819 1.20810 0.95982 1.00073 0.92040 1.20721 1.03397 0.91923 0.94780 1.98348 1.74403 1.65952 1.66546 1.20788 0.97194 0.91180 0.99535 1.21319 1.03559 1.01192 0.95609 0.90003 0.94305 0.93990 0.92583 0.92145 0.90431 0.88044 0.93833 0.94888 0.92735 0.90574 0.89917 0.91296 0.84116 0.84498 0.84914 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.26 8.11 -35.23 -0.29 -5.54 16 3 C 0.04 0.50 6.27 37.16 0.23 0.73 16 4 C 0.10 1.54 5.52 -4.04 -0.02 1.51 16 5 N -0.59 -12.08 2.41 -175.07 -0.42 -12.50 16 6 C 0.25 6.31 5.15 -5.19 -0.03 6.28 16 7 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.52 11.16 6.77 -10.98 -0.07 11.09 16 16 O -0.52 -13.72 16.23 -13.58 -0.22 -13.94 16 17 C 0.06 0.91 1.77 -27.88 -0.05 0.86 16 18 H 0.12 1.65 2.99 -51.93 -0.16 1.50 16 19 C -0.18 -2.38 8.81 37.16 0.33 -2.06 16 20 O -0.28 -4.82 9.41 -38.63 -0.36 -5.18 16 21 C 0.15 2.07 6.58 -39.22 -0.26 1.81 16 22 C -0.14 -1.75 9.99 -39.44 -0.39 -2.15 16 23 C -0.07 -0.73 9.82 -39.57 -0.39 -1.12 16 24 C -0.08 -0.85 6.32 -39.49 -0.25 -1.10 16 25 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.27 16 26 C -0.07 -0.70 9.82 -39.57 -0.39 -1.09 16 27 C -0.20 -2.29 8.27 -39.44 -0.33 -2.62 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.08 0.95 4.51 -51.93 -0.23 0.72 16 34 H 0.10 1.45 8.12 -51.93 -0.42 1.03 16 35 H 0.04 1.27 7.48 -51.93 -0.39 0.88 16 36 H 0.03 0.83 7.98 -51.93 -0.41 0.42 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.02 6.20 -51.93 -0.32 0.69 16 40 H 0.07 0.74 6.93 -51.93 -0.36 0.38 16 41 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.14 1.48 5.41 -52.49 -0.28 1.20 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -33.59 378.89 -8.22 -41.81 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.92 Total: 0.38 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.93 Total: 0.43 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.31 Total: -37.86 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.87 Total: -24.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.59 -8.22 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.773 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds