Wall clock time and date at job start Tue Mar 31 2020 23:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.47249 * 180.02562 * 16 14 12 18 18 C 1.46499 * 119.99857 * 275.00367 * 17 16 14 19 19 S 1.65602 * 120.00326 * 94.99861 * 17 16 14 20 20 O 1.42095 * 106.40627 * 203.54685 * 19 17 16 21 21 O 1.42101 * 106.40057 * 336.46408 * 19 17 16 22 22 C 1.76198 * 107.21680 * 90.00085 * 19 17 16 23 23 C 1.38676 * 120.42037 * 269.72314 * 22 19 17 24 24 C 1.38631 * 118.42029 * 179.78612 * 23 22 19 25 25 C 1.38227 * 119.15681 * 0.50858 * 24 23 22 26 26 N 1.31850 * 120.76745 * 359.73398 * 25 24 23 27 27 C 1.31886 * 121.72685 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 29 29 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 30 30 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 33 33 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 34 34 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 35 35 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 36 36 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 37 37 H 1.09001 * 109.47550 * 90.00097 * 18 17 16 38 38 H 1.08999 * 109.47195 * 209.99591 * 18 17 16 39 39 H 1.08992 * 109.47558 * 329.99641 * 18 17 16 40 40 H 1.07999 * 120.78854 * 0.02562 * 23 22 19 41 41 H 1.07996 * 120.41650 * 180.22575 * 24 23 22 42 42 H 1.08003 * 119.61180 * 179.75155 * 25 24 23 43 43 H 1.08000 * 119.61497 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 7 4.1103 0.1744 -4.1106 18 6 3.4684 1.0793 -5.0672 19 16 5.7564 0.1922 -3.9305 20 8 6.1935 1.4737 -4.3616 21 8 6.0238 -0.3246 -2.6341 22 6 6.4191 -0.9710 -5.0762 23 6 6.6073 -2.2937 -4.7043 24 6 7.1272 -3.1745 -5.6401 25 6 7.4483 -2.7061 -6.9003 26 7 7.2605 -1.4402 -7.2174 27 6 6.7627 -0.5756 -6.3548 28 1 -0.3634 -1.0229 0.0993 29 1 -0.3634 0.5974 0.8361 30 1 -0.3633 0.4254 -0.9355 31 1 2.9613 -0.1040 4.2479 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9862 34 1 1.5296 -2.5969 -0.4706 35 1 3.9019 -1.6023 -3.0164 36 1 2.4486 -1.0893 -3.9068 37 1 3.2211 2.0175 -4.5703 38 1 4.1495 1.2754 -5.8953 39 1 2.5569 0.6186 -5.4478 40 1 6.3513 -2.6303 -3.7106 41 1 7.2836 -4.2125 -5.3861 42 1 7.8576 -3.3851 -7.6337 43 1 6.6227 0.4535 -6.6510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:00 Heat of formation + Delta-G solvation = -49.619425 kcal Electronic energy + Delta-G solvation = -28484.884264 eV Core-core repulsion = 24465.431116 eV Total energy + Delta-G solvation = -4019.453147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48738 -39.36197 -37.34328 -36.22341 -35.86873 -35.11133 -33.07403 -32.70335 -31.89789 -30.68550 -28.37866 -26.23466 -25.39337 -25.10558 -24.37831 -24.11408 -21.24826 -19.37865 -18.68318 -18.02327 -17.72776 -17.35188 -17.00471 -16.92363 -16.24342 -15.97492 -15.36540 -14.87495 -14.79777 -14.46677 -14.25057 -14.10014 -13.65462 -13.58855 -13.14011 -13.00443 -12.77921 -12.61907 -12.42135 -12.36678 -12.17230 -12.09530 -11.91979 -11.66473 -11.60346 -11.44037 -11.34817 -11.04651 -10.69875 -10.64188 -10.42457 -10.06977 -9.90604 -9.82222 -9.77118 -9.24939 -8.74175 -8.58251 -7.70392 -6.14831 -4.17084 0.01969 0.32937 0.72445 2.71561 3.19266 3.21197 3.34362 3.41470 3.49315 3.63448 3.83632 3.93440 4.00845 4.33588 4.41476 4.42262 4.52597 4.66091 4.84682 4.97883 5.10565 5.14478 5.23490 5.27263 5.38499 5.40719 5.51295 5.61959 5.71567 5.85336 5.89337 6.06591 6.24238 6.24673 6.33618 6.38019 6.57430 6.91885 7.06175 7.31959 7.47100 7.63759 8.11188 8.49167 8.84893 8.89474 9.47790 10.97017 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.003354 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.362980 B = 8345.999346 C = 8442.266842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.269 1.269 10 H -0.264 1.264 11 H -0.288 1.288 12 N -0.587 5.587 13 C 0.079 3.921 14 C 0.488 3.512 15 O -0.544 6.544 16 C 0.105 3.895 17 N -0.980 5.980 18 C 0.095 3.905 19 S 2.695 3.305 20 O -0.946 6.946 21 O -0.934 6.934 22 C -0.736 4.736 23 C 0.025 3.975 24 C -0.192 4.192 25 C 0.147 3.853 26 N -0.497 5.497 27 C 0.198 3.802 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.165 0.835 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -6.733 -22.286 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.700 3.300 9 H -0.195 1.195 10 H -0.188 1.188 11 H -0.214 1.214 12 N -0.319 5.319 13 C -0.065 4.065 14 C 0.273 3.727 15 O -0.422 6.422 16 C -0.024 4.024 17 N -0.818 5.818 18 C -0.050 4.050 19 S 2.782 3.218 20 O -0.936 6.936 21 O -0.924 6.924 22 C -0.822 4.822 23 C -0.002 4.002 24 C -0.213 4.213 25 C -0.009 4.009 26 N -0.206 5.206 27 C 0.039 3.961 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.182 0.818 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.145 -5.325 -22.270 23.270 hybrid contribution -0.223 -0.136 0.493 0.557 sum 3.922 -5.461 -21.777 22.792 Atomic orbital electron populations 1.22210 0.98273 1.00881 0.99040 1.19314 0.90721 0.95010 0.82789 0.91805 1.21102 1.44799 0.95682 0.94772 0.90301 1.24949 0.93629 0.98500 0.95291 1.69882 1.44656 1.36091 1.02142 0.86920 0.80004 0.86134 0.76941 1.19472 1.18843 1.21376 1.48342 1.49079 1.11627 1.22861 1.21680 0.98769 0.83143 1.02887 1.20807 0.79602 0.87688 0.84638 1.90644 1.57888 1.17151 1.76553 1.21302 0.97363 0.91727 0.91988 1.57019 1.23791 1.49713 1.51269 1.21540 0.98518 0.94051 0.90887 1.02252 0.72108 0.73782 0.73677 1.93577 1.79984 1.36915 1.83119 1.93654 1.83193 1.80764 1.34783 1.32346 1.20181 1.14109 1.15552 1.21470 0.88402 0.90596 0.99711 1.22314 1.02090 1.01773 0.95104 1.23195 0.90668 0.92128 0.94886 1.67865 1.13602 1.03484 1.35674 1.22634 0.87087 0.99432 0.86901 0.93143 0.92644 0.95577 0.92378 0.93619 0.92636 0.89663 0.87580 0.87446 0.91194 0.91114 0.90822 0.82765 0.83466 0.81825 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.09 37.16 0.34 -2.65 16 2 C 0.22 5.31 2.27 -69.08 -0.16 5.15 16 3 H 0.06 1.70 4.11 -51.93 -0.21 1.48 16 4 C -0.53 -14.41 8.72 -34.44 -0.30 -14.71 16 5 H 0.08 2.26 6.82 -52.49 -0.36 1.90 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.87 22.59 26.91 -169.99 -4.57 18.02 16 9 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.26 -6.52 6.73 56.52 0.38 -6.14 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 N -0.59 -11.76 2.75 -175.26 -0.48 -12.24 16 13 C 0.08 1.17 9.40 59.85 0.56 1.74 16 14 C 0.49 9.58 7.74 -10.99 -0.09 9.50 16 15 O -0.54 -13.03 15.75 5.56 0.09 -12.94 16 16 C 0.11 1.39 4.40 -5.20 -0.02 1.37 16 17 N -0.98 -12.88 2.68 -123.06 -0.33 -13.21 16 18 C 0.10 1.00 10.32 59.85 0.62 1.61 16 19 S 2.70 39.44 5.61 -107.50 -0.60 38.84 16 20 O -0.95 -15.62 16.38 -57.18 -0.94 -16.56 16 21 O -0.93 -17.17 16.33 -57.18 -0.93 -18.11 16 22 C -0.74 -8.18 5.99 -39.44 -0.24 -8.42 16 23 C 0.02 0.24 9.65 -39.27 -0.38 -0.14 16 24 C -0.19 -1.40 10.11 -39.44 -0.40 -1.80 16 25 C 0.15 1.14 11.18 -17.55 -0.20 0.94 16 26 N -0.50 -5.10 10.36 -13.25 -0.14 -5.24 16 27 C 0.20 2.09 10.69 -17.55 -0.19 1.91 16 28 H 0.05 0.95 7.86 -51.93 -0.41 0.55 16 29 H 0.05 1.16 7.97 -51.93 -0.41 0.75 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 34 H 0.08 1.41 6.56 -51.93 -0.34 1.07 16 35 H 0.11 1.20 6.87 -51.93 -0.36 0.85 16 36 H 0.11 0.97 7.93 -51.93 -0.41 0.56 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 39 H 0.07 0.57 7.94 -51.93 -0.41 0.15 16 40 H 0.15 1.30 7.70 -52.49 -0.40 0.89 16 41 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.17 1.54 7.63 -52.49 -0.40 1.14 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -39.15 371.18 -7.81 -46.96 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.73 Total: -1.64 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.54 Total: -3.29 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.18 Total: -56.88 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.78 Total: -47.61 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.57 Total: 18.02 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.60 Total: 38.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.15 -7.81 -46.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.657 kcal (2) G-P(sol) polarization free energy of solvation -39.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds