Wall clock time and date at job start Tue Mar 31 2020 23:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 C 1.50701 * 109.47321 * 239.99962 * 2 1 3 5 5 H 1.07995 * 119.99964 * 275.00545 * 4 2 1 6 6 C 1.37877 * 119.99713 * 95.00405 * 4 2 1 7 7 N 1.31517 * 119.99624 * 184.91805 * 6 4 2 8 8 Si 1.86794 * 120.00262 * 4.91516 * 6 4 2 9 9 H 1.48504 * 109.47033 * 84.83740 * 8 6 4 10 10 H 1.48505 * 109.47504 * 204.83556 * 8 6 4 11 11 H 1.48504 * 109.47321 * 324.83948 * 8 6 4 12 12 N 1.46501 * 109.46755 * 120.00045 * 2 1 3 13 13 C 1.46494 * 120.00272 * 60.00494 * 12 2 1 14 14 C 1.34777 * 119.99583 * 239.99641 * 12 2 1 15 15 O 1.21278 * 120.00339 * 0.02562 * 14 12 2 16 16 C 1.50703 * 119.99841 * 180.02562 * 14 12 2 17 17 C 1.53002 * 109.47329 * 180.02562 * 16 14 12 18 18 N 1.46499 * 109.46916 * 180.02562 * 17 16 14 19 19 S 1.65600 * 119.99758 * 165.00032 * 18 17 16 20 20 O 1.42106 * 106.40256 * 311.45643 * 19 18 17 21 21 O 1.42099 * 106.40238 * 178.53562 * 19 18 17 22 22 C 1.76201 * 107.21954 * 64.99635 * 19 18 17 23 23 C 1.38677 * 120.42123 * 270.25153 * 22 19 18 24 24 C 1.38623 * 118.42357 * 180.24165 * 23 22 19 25 25 C 1.38234 * 119.15810 * 359.75403 * 24 23 22 26 26 N 1.31856 * 120.76345 * 0.02562 * 25 24 23 27 27 C 1.31882 * 121.72535 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.46794 * 54.97610 * 1 2 3 29 29 H 1.09000 * 109.46767 * 174.97420 * 1 2 3 30 30 H 1.09000 * 109.47219 * 294.97969 * 1 2 3 31 31 H 0.97008 * 119.99589 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.46972 * 269.99864 * 13 12 2 33 33 H 1.08999 * 109.47082 * 29.99264 * 13 12 2 34 34 H 1.08999 * 109.47670 * 149.99753 * 13 12 2 35 35 H 1.09000 * 109.47116 * 59.99903 * 16 14 12 36 36 H 1.09009 * 109.47040 * 300.00258 * 16 14 12 37 37 H 1.09003 * 109.46996 * 59.99612 * 17 16 14 38 38 H 1.09004 * 109.46494 * 300.00155 * 17 16 14 39 39 H 0.97000 * 120.00337 * 344.99253 * 18 17 16 40 40 H 1.08000 * 120.78304 * 359.97418 * 23 22 19 41 41 H 1.07997 * 120.42250 * 179.73235 * 24 23 22 42 42 H 1.08004 * 119.61631 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.61214 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2290 6 6 2.3605 0.0122 -2.3580 7 7 2.7061 -0.6131 -3.4621 8 14 2.3138 1.8791 -2.3173 9 1 3.5994 2.3948 -1.7821 10 1 2.1060 2.3992 -3.6927 11 1 1.1989 2.3275 -1.4448 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2960 -0.7462 3.3136 17 6 4.1454 0.2157 4.1468 18 7 4.6346 -0.4753 5.3424 19 16 5.8664 0.1821 6.2328 20 8 6.8858 0.5354 5.3080 21 8 6.0819 -0.6959 7.3291 22 6 5.2683 1.6925 6.9151 23 6 5.4099 2.8828 6.2178 24 6 4.9289 4.0473 6.7957 25 6 4.3237 3.9831 8.0368 26 7 4.2023 2.8325 8.6693 27 6 4.6481 1.7053 8.1499 28 1 -0.3633 0.5898 -0.8415 29 1 -0.3633 -1.0237 -0.0900 30 1 -0.3633 0.4340 0.9315 31 1 2.9366 -0.1047 -4.2556 32 1 0.7375 -2.1444 1.9993 33 1 1.5296 -2.5968 0.4708 34 1 2.4629 -2.5819 1.9864 35 1 3.9017 -1.6024 3.0166 36 1 2.4483 -1.0891 3.9070 37 1 3.5393 1.0716 4.4437 38 1 4.9930 0.5589 3.5535 39 1 4.2370 -1.3178 5.6125 40 1 5.8876 2.9025 5.2493 41 1 5.0260 4.9928 6.2829 42 1 3.9459 4.8859 8.4937 43 1 4.5311 0.7820 8.6980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:57 Heat of formation + Delta-G solvation = -69.273997 kcal Electronic energy + Delta-G solvation = -27421.127566 eV Core-core repulsion = 23400.822132 eV Total energy + Delta-G solvation = -4020.305434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50774 -39.41907 -37.54686 -36.17252 -36.10210 -35.30255 -33.10076 -32.79694 -31.92675 -31.07748 -29.48309 -26.28207 -25.33290 -24.47496 -24.22659 -23.85604 -20.90888 -19.98297 -18.64971 -18.28019 -17.70877 -17.33126 -17.09340 -16.98191 -16.56047 -15.71429 -15.62784 -15.41118 -14.88679 -14.60676 -14.46457 -14.19984 -13.88626 -13.66168 -13.18369 -13.07282 -12.64875 -12.49680 -12.45708 -12.37774 -12.34691 -12.26307 -12.09298 -11.72243 -11.58335 -11.51830 -11.39042 -11.10801 -10.77803 -10.65682 -10.50164 -10.08106 -9.92335 -9.83683 -9.75132 -9.37555 -9.14464 -8.65913 -7.77420 -6.22185 -4.24964 -0.04036 0.25270 0.72393 2.62526 3.12340 3.16532 3.27398 3.34596 3.40911 3.44738 3.74572 3.90465 3.94298 4.33397 4.33647 4.39418 4.60506 4.63450 4.83880 4.96146 5.01146 5.14691 5.19405 5.29137 5.36621 5.40994 5.51995 5.62675 5.78941 5.89135 5.92808 6.05447 6.20281 6.28217 6.32931 6.51768 6.64208 6.85751 7.00122 7.30616 7.38766 7.56775 8.04477 8.42452 8.77224 8.81773 9.40027 10.89614 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.002768 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.854196 B =10113.157520 C =10660.616440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.222 3.778 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.875 3.125 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.587 5.587 13 C 0.080 3.920 14 C 0.506 3.494 15 O -0.558 6.558 16 C -0.147 4.147 17 C 0.129 3.871 18 N -1.115 6.115 19 S 2.705 3.295 20 O -0.948 6.948 21 O -0.956 6.956 22 C -0.736 4.736 23 C 0.028 3.972 24 C -0.192 4.192 25 C 0.150 3.850 26 N -0.498 5.498 27 C 0.200 3.800 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.025 0.975 31 H 0.267 0.733 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.420 0.580 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.165 0.835 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 3.177 22.045 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.438 6.438 16 C -0.188 4.188 17 C 0.003 3.997 18 N -0.877 5.877 19 S 2.792 3.208 20 O -0.938 6.938 21 O -0.947 6.947 22 C -0.823 4.823 23 C 0.001 3.999 24 C -0.212 4.212 25 C -0.006 4.006 26 N -0.207 5.207 27 C 0.041 3.959 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.255 0.745 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.182 0.818 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.095 3.647 22.591 22.979 hybrid contribution -0.378 1.063 -0.779 1.371 sum 1.717 4.711 21.812 22.381 Atomic orbital electron populations 1.22211 0.98288 1.00901 0.99078 1.19332 0.90796 0.94968 0.82777 0.91733 1.21107 1.44910 0.95679 0.94841 0.90346 1.24965 0.93694 0.98568 0.95209 1.69889 1.44967 1.36148 1.01710 0.86884 0.79885 0.86010 0.76992 1.19550 1.21376 1.18880 1.48340 1.48796 1.11748 1.22846 1.21669 0.98952 0.83012 1.02716 1.20212 0.79294 0.87062 0.84181 1.90652 1.58694 1.17278 1.77185 1.21824 1.01041 1.00027 0.95957 1.21105 0.99548 0.94466 0.84547 1.55491 1.58041 1.35011 1.39120 1.01697 0.73020 0.73046 0.73087 1.93625 1.53314 1.84072 1.62750 1.93603 1.84140 1.63408 1.53499 1.32050 1.19654 1.21604 1.08986 1.21493 0.89269 0.90824 0.98287 1.22332 1.01150 1.00014 0.97711 1.23214 0.90233 0.96178 0.90930 1.67866 1.18534 0.98904 1.35427 1.22621 0.86424 0.97361 0.89508 0.92614 0.93150 0.95574 0.92313 0.93739 0.89872 0.92331 0.88055 0.88627 0.90943 0.88970 0.74542 0.82688 0.83430 0.81793 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.10 37.16 0.34 -2.60 16 2 C 0.22 5.09 2.30 -69.08 -0.16 4.93 16 3 H 0.06 1.64 4.05 -51.93 -0.21 1.42 16 4 C -0.53 -13.99 8.72 -34.44 -0.30 -14.29 16 5 H 0.08 2.19 6.82 -52.49 -0.36 1.84 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.88 21.65 26.99 -169.99 -4.59 17.06 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.28 6.82 56.52 0.39 -5.90 16 12 N -0.59 -11.21 2.75 -175.25 -0.48 -11.69 16 13 C 0.08 1.17 9.39 59.84 0.56 1.74 16 14 C 0.51 9.15 7.67 -10.98 -0.08 9.07 16 15 O -0.56 -12.16 15.31 5.56 0.09 -12.08 16 16 C -0.15 -1.74 4.39 -27.88 -0.12 -1.86 16 17 C 0.13 1.45 5.51 -4.04 -0.02 1.43 16 18 N -1.12 -9.66 6.00 -10.61 -0.06 -9.73 16 19 S 2.70 27.73 5.75 -107.50 -0.62 27.12 16 20 O -0.95 -12.80 16.84 -57.17 -0.96 -13.77 16 21 O -0.96 -11.32 17.31 -57.17 -0.99 -12.31 16 22 C -0.74 -7.14 5.96 -39.44 -0.24 -7.37 16 23 C 0.03 0.26 9.65 -39.28 -0.38 -0.12 16 24 C -0.19 -1.49 10.11 -39.44 -0.40 -1.89 16 25 C 0.15 1.20 11.18 -17.54 -0.20 1.01 16 26 N -0.50 -5.02 10.36 -13.25 -0.14 -5.16 16 27 C 0.20 1.93 10.69 -17.55 -0.19 1.74 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.08 1.37 6.56 -51.93 -0.34 1.03 16 34 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 35 H 0.10 1.06 7.40 -51.93 -0.38 0.68 16 36 H 0.10 0.85 8.11 -51.92 -0.42 0.43 16 37 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 38 H 0.09 1.19 7.71 -51.93 -0.40 0.79 16 39 H 0.42 2.56 8.65 -34.47 -0.30 2.26 16 40 H 0.16 1.32 7.72 -52.49 -0.40 0.91 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.17 1.31 7.63 -52.48 -0.40 0.91 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -36.90 372.33 -8.30 -45.20 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.65 Total: 1.28 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.28 Total: -6.08 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.09 Total: -52.03 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.87 Total: -38.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Atomic # 16 Polarization: 27.73 SS G_CDS: -0.62 Total: 27.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.90 -8.30 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.078 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds