Wall clock time and date at job start Tue Mar 31 2020 23:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47134 * 2 1 4 4 N 1.46500 * 109.46813 * 240.00317 * 2 1 3 5 5 S 1.65604 * 119.99957 * 94.99773 * 4 2 1 6 6 O 1.42096 * 106.40520 * 178.53850 * 5 4 2 7 7 O 1.42092 * 106.40183 * 311.46174 * 5 4 2 8 8 N 1.65600 * 107.21471 * 65.00099 * 5 4 2 9 9 C 1.46493 * 120.00096 * 90.00179 * 8 5 4 10 10 C 1.46507 * 119.99744 * 269.99721 * 8 5 4 11 11 C 1.50706 * 109.46786 * 95.00480 * 10 8 5 12 12 H 1.07994 * 120.00165 * 359.97438 * 11 10 8 13 13 C 1.37874 * 119.99858 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99719 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47015 * 90.00069 * 15 13 11 17 17 H 1.48495 * 109.47052 * 210.00290 * 15 13 11 18 18 H 1.48503 * 109.46723 * 330.00325 * 15 13 11 19 19 C 1.50702 * 109.47221 * 120.00774 * 2 1 3 20 20 O 1.21286 * 120.00229 * 119.99841 * 19 2 1 21 21 N 1.34774 * 119.99546 * 299.99640 * 19 2 1 22 22 C 1.39927 * 119.99816 * 175.36873 * 21 19 2 23 23 C 1.38869 * 120.07305 * 214.80575 * 22 21 19 24 24 C 1.38114 * 119.92907 * 179.79268 * 23 22 21 25 25 C 1.38281 * 120.06968 * 0.48525 * 24 23 22 26 26 C 1.38279 * 120.14266 * 359.74956 * 25 24 23 27 27 C 1.38112 * 120.07205 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46939 * 299.99123 * 1 2 3 29 29 H 1.08996 * 109.47685 * 59.99717 * 1 2 3 30 30 H 1.09008 * 109.47129 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00745 * 275.00153 * 4 2 1 32 32 H 1.09000 * 109.47192 * 89.99768 * 9 8 5 33 33 H 1.09007 * 109.47154 * 209.99863 * 9 8 5 34 34 H 1.09001 * 109.47098 * 329.99637 * 9 8 5 35 35 H 1.09000 * 109.46665 * 214.99989 * 10 8 5 36 36 H 1.08997 * 109.47279 * 335.00520 * 10 8 5 37 37 H 0.97007 * 119.99721 * 179.97438 * 14 13 11 38 38 H 0.97002 * 120.00284 * 355.36848 * 21 19 2 39 39 H 1.08000 * 120.03587 * 0.03015 * 23 22 21 40 40 H 1.08000 * 119.96263 * 180.23608 * 24 23 22 41 41 H 1.08003 * 119.93025 * 179.71729 * 25 24 23 42 42 H 1.08006 * 119.96814 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.03848 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4120 0.1773 -2.5506 6 8 2.8774 -0.7632 -3.5087 7 8 1.3245 1.0594 -2.7921 8 7 3.7096 1.1301 -2.1621 9 6 5.0717 0.6263 -2.3539 10 6 3.4952 2.4768 -1.6265 11 6 3.5356 2.4308 -0.1207 12 1 3.7036 1.4924 0.3866 13 6 3.3579 3.5869 0.6092 14 7 3.1528 4.7297 -0.0086 15 14 3.4072 3.5299 2.4757 16 1 4.8009 3.7456 2.9409 17 1 2.5311 4.5947 3.0268 18 1 2.9289 2.2040 2.9432 19 6 2.0324 -0.7106 1.2304 20 8 2.7296 -1.6967 1.1190 21 7 1.7068 -0.2502 2.4545 22 6 2.0912 -0.9635 3.5953 23 6 1.2634 -0.9922 4.7098 24 6 1.6438 -1.7007 5.8327 25 6 2.8522 -2.3727 5.8515 26 6 3.6811 -2.3420 4.7451 27 6 3.3043 -1.6392 3.6174 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 2.1109 -1.6561 -1.1951 32 1 5.4159 0.8820 -3.3561 33 1 5.7339 1.0791 -1.6158 34 1 5.0790 -0.4569 -2.2326 35 1 4.2784 3.1415 -1.9909 36 1 2.5234 2.8471 -1.9528 37 1 3.0274 5.5430 0.5050 38 1 1.2060 0.5756 2.5447 39 1 0.3213 -0.4643 4.6972 40 1 0.9986 -1.7266 6.6984 41 1 3.1495 -2.9223 6.7324 42 1 4.6245 -2.8676 4.7630 43 1 3.9523 -1.6153 2.7537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112090727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:32 Heat of formation + Delta-G solvation = -80.336526 kcal Electronic energy + Delta-G solvation = -29156.446475 eV Core-core repulsion = 25135.661335 eV Total energy + Delta-G solvation = -4020.785141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51782 -38.51664 -36.71198 -35.64096 -35.25113 -35.11285 -34.68827 -32.66922 -30.89423 -30.28630 -28.79562 -27.92697 -25.17001 -24.46967 -22.82374 -22.43527 -22.10389 -20.17406 -19.02842 -18.10432 -17.55454 -16.83637 -16.74494 -16.28423 -16.20701 -15.57790 -15.28683 -15.08081 -14.55326 -14.32174 -14.01649 -13.59216 -13.46843 -13.39090 -13.29070 -13.10503 -12.67081 -12.36407 -12.28302 -12.24166 -11.76612 -11.68760 -11.58505 -11.53637 -11.33931 -11.29364 -11.19696 -11.16841 -10.83034 -10.66684 -10.32401 -10.17007 -9.95291 -9.60245 -9.21262 -8.90729 -8.68055 -8.13909 -8.10183 -6.30261 -4.38945 1.23284 1.29075 1.41996 2.73157 3.03527 3.09175 3.18445 3.20988 3.55512 3.84083 4.12317 4.17735 4.72155 4.90517 4.94215 4.98211 4.99996 5.14670 5.28814 5.39969 5.46715 5.53070 5.58125 5.63905 5.68844 5.92030 6.01707 6.08343 6.19395 6.30136 6.33621 6.36051 6.39736 6.51362 6.53603 6.57876 7.06948 7.21131 7.23743 7.35951 7.46053 7.56942 7.68155 7.96960 8.20351 8.66534 9.26798 10.76263 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.005050 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.634006 B = 5542.896430 C = 6867.006767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 H 0.162 0.838 4 N -1.110 6.110 5 S 2.789 3.211 6 O -0.997 6.997 7 O -0.976 6.976 8 N -0.998 5.998 9 C 0.107 3.893 10 C 0.239 3.761 11 C -0.554 4.554 12 H 0.065 0.935 13 C 0.070 3.930 14 N -0.877 5.877 15 Si 0.885 3.115 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.524 3.476 20 O -0.520 6.520 21 N -0.671 5.671 22 C 0.155 3.845 23 C -0.149 4.149 24 C -0.104 4.104 25 C -0.143 4.143 26 C -0.103 4.103 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.413 0.587 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.267 0.733 38 H 0.414 0.586 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -9.476 8.107 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 H 0.178 0.822 4 N -0.868 5.868 5 S 2.796 3.204 6 O -0.981 6.981 7 O -0.959 6.959 8 N -0.840 5.840 9 C -0.040 4.040 10 C 0.117 3.883 11 C -0.592 4.592 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.514 5.514 15 Si 0.712 3.288 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.190 1.190 19 C 0.311 3.689 20 O -0.395 6.395 21 N -0.317 5.317 22 C 0.060 3.940 23 C -0.170 4.170 24 C -0.123 4.123 25 C -0.161 4.161 26 C -0.122 4.122 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.247 0.753 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.251 0.749 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.203 -9.785 7.092 12.502 hybrid contribution 0.203 0.168 1.672 1.693 sum -3.001 -9.617 8.765 13.353 Atomic orbital electron populations 1.22268 0.93271 1.02631 1.04210 1.21230 0.95484 1.00363 0.82529 0.82158 1.55905 1.82238 1.19594 1.29036 1.01720 0.73538 0.72398 0.72703 1.93556 1.82107 1.63800 1.58634 1.93578 1.52763 1.65451 1.84112 1.57606 1.18122 1.28137 1.80162 1.21221 0.83947 0.97954 1.00849 1.19281 0.99137 0.76573 0.93317 1.21578 1.51364 0.94534 0.91768 0.91733 1.24977 0.94554 0.95254 0.98688 1.69931 1.46575 0.98905 1.35979 0.86718 0.78619 0.78249 0.85224 1.20500 1.20924 1.18959 1.21034 0.79300 0.84099 0.84433 1.90631 1.36217 1.26334 1.86332 1.43585 1.57066 1.26653 1.04350 1.17830 0.93469 0.95733 0.86934 1.20918 0.99473 1.02813 0.93789 1.20886 0.96741 0.97153 0.97486 1.21090 0.95244 1.01212 0.98588 1.21065 0.99607 0.98698 0.92808 1.21392 0.95050 0.98411 0.99298 0.91362 0.89464 0.92282 0.75269 0.93667 0.90852 0.92685 0.94170 0.92751 0.92274 0.74894 0.85758 0.85919 0.86264 0.85908 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.42 37.16 0.35 -1.94 16 2 C 0.11 1.93 2.91 -69.08 -0.20 1.72 16 3 H 0.16 3.06 4.25 -51.93 -0.22 2.84 16 4 N -1.11 -18.94 5.32 -5.88 -0.03 -18.98 16 5 S 2.79 54.31 6.01 -107.50 -0.65 53.66 16 6 O -1.00 -20.57 17.21 -57.18 -0.98 -21.56 16 7 O -0.98 -21.17 15.95 -57.18 -0.91 -22.09 16 8 N -1.00 -20.08 3.23 -123.05 -0.40 -20.47 16 9 C 0.11 1.86 10.31 59.84 0.62 2.48 16 10 C 0.24 5.55 5.29 -5.19 -0.03 5.53 16 11 C -0.55 -13.12 6.91 -34.44 -0.24 -13.36 16 12 H 0.06 1.49 6.91 -52.49 -0.36 1.13 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.88 -23.06 13.29 55.43 0.74 -22.33 16 15 Si 0.89 18.61 29.54 -169.99 -5.02 13.59 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 C 0.52 8.80 7.03 -10.99 -0.08 8.73 16 20 O -0.52 -9.67 13.43 5.55 0.07 -9.60 16 21 N -0.67 -10.06 5.20 -9.86 -0.05 -10.11 16 22 C 0.15 2.29 6.30 -83.69 -0.53 1.76 16 23 C -0.15 -1.82 9.97 -39.39 -0.39 -2.21 16 24 C -0.10 -1.13 10.04 -39.61 -0.40 -1.52 16 25 C -0.14 -1.57 10.04 -39.55 -0.40 -1.97 16 26 C -0.10 -1.30 10.04 -39.61 -0.40 -1.70 16 27 C -0.12 -1.86 8.70 -39.39 -0.34 -2.20 16 28 H 0.07 0.78 7.67 -51.93 -0.40 0.39 16 29 H 0.09 1.30 7.64 -51.93 -0.40 0.91 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.41 6.50 8.21 -34.47 -0.28 6.21 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.26 8.07 -51.92 -0.42 0.84 16 34 H 0.05 0.88 7.79 -51.93 -0.40 0.48 16 35 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.41 5.47 8.39 -40.82 -0.34 5.13 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.14 2.39 6.22 -52.48 -0.33 2.07 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -30.65 369.91 -9.39 -40.04 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.61 Total: 15.31 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.13 Total: -3.06 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: 0.26 Total: -71.89 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -1.82 Total: -53.24 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.65 Total: 53.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.65 -9.39 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112090727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.294 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds