Wall clock time and date at job start Tue Mar 31 2020 23:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00319 * 2 1 4 4 C 1.53000 * 109.47287 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47122 * 64.99715 * 4 3 2 6 6 C 1.46498 * 120.00329 * 273.38333 * 5 4 3 7 7 C 1.50701 * 109.47179 * 266.14295 * 6 5 4 8 8 H 1.08002 * 119.99831 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00004 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00143 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99787 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47030 * 90.00013 * 11 9 7 13 13 H 1.48499 * 109.46791 * 210.00368 * 11 9 7 14 14 H 1.48498 * 109.47019 * 329.99833 * 11 9 7 15 15 C 1.34778 * 119.99852 * 93.38472 * 5 4 3 16 16 O 1.21282 * 120.00035 * 355.25425 * 15 5 4 17 17 C 1.50699 * 119.99718 * 175.53576 * 15 5 4 18 18 H 1.08999 * 109.47596 * 317.85855 * 17 15 5 19 19 C 1.52997 * 109.47659 * 77.86245 * 17 15 5 20 20 O 1.42903 * 109.47049 * 197.86169 * 17 15 5 21 21 C 1.35925 * 117.00310 * 154.99868 * 20 17 15 22 22 C 1.38714 * 120.05698 * 5.90007 * 21 20 17 23 23 C 1.38150 * 119.95355 * 179.74355 * 22 21 20 24 24 C 1.38276 * 120.08005 * 0.52452 * 23 22 21 25 25 C 1.38252 * 120.11787 * 359.72923 * 24 23 22 26 26 C 1.38257 * 120.04009 * 0.02562 * 25 24 23 27 27 Cl 1.73599 * 120.03516 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.46886 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46556 * 300.00018 * 1 2 3 30 30 H 1.08997 * 109.46672 * 59.99615 * 1 2 3 31 31 H 1.08999 * 109.47232 * 59.99723 * 3 2 1 32 32 H 1.09001 * 109.46867 * 300.00259 * 3 2 1 33 33 H 1.08993 * 109.46984 * 305.00156 * 4 3 2 34 34 H 1.09002 * 109.47022 * 184.99971 * 4 3 2 35 35 H 1.09008 * 109.47011 * 26.14047 * 6 5 4 36 36 H 1.08997 * 109.47402 * 146.14240 * 6 5 4 37 37 H 0.96994 * 120.00312 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.46693 * 66.45895 * 19 17 15 39 39 H 1.09001 * 109.47289 * 186.45301 * 19 17 15 40 40 H 1.09000 * 109.47336 * 306.46015 * 19 17 15 41 41 H 1.07998 * 120.01947 * 359.97438 * 22 21 20 42 42 H 1.08004 * 119.96099 * 180.25224 * 23 22 21 43 43 H 1.07999 * 119.94073 * 179.74218 * 24 23 22 44 44 H 1.07995 * 119.97729 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0342 -0.8951 -1.3663 7 6 5.4252 -1.3696 -1.0329 8 1 6.1893 -0.6554 -0.7638 9 6 5.7222 -2.7155 -1.0715 10 7 4.7918 -3.5851 -1.3997 11 14 7.4466 -3.3035 -0.6590 12 1 7.5409 -3.5780 0.7973 13 1 7.7403 -4.5462 -1.4170 14 1 8.4294 -2.2538 -1.0295 15 6 4.3270 1.3363 -2.3002 16 8 4.1972 2.5404 -2.2364 17 6 4.8750 0.7027 -3.5528 18 1 5.5771 -0.0865 -3.2837 19 6 3.7256 0.1065 -4.3678 20 8 5.5480 1.6933 -4.3325 21 6 6.5166 1.2578 -5.1808 22 6 6.7300 -0.1020 -5.3523 23 6 7.7116 -0.5423 -6.2191 24 6 8.4886 0.3710 -6.9077 25 6 8.2822 1.7271 -6.7352 26 6 7.2979 2.1731 -5.8728 27 17 7.0382 3.8759 -5.6568 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 3.3218 -1.3424 -0.6729 36 1 3.7840 -1.1906 -2.3851 37 1 5.0007 -4.5319 -1.4264 38 1 3.0854 0.9091 -4.7341 39 1 4.1301 -0.4500 -5.2133 40 1 3.1424 -0.5642 -3.7369 41 1 6.1268 -0.8161 -4.8114 42 1 7.8751 -1.6011 -6.3558 43 1 9.2581 0.0243 -7.5816 44 1 8.8907 2.4384 -7.2737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113448113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:52 Heat of formation + Delta-G solvation = -93.118727 kcal Electronic energy + Delta-G solvation = -28481.251700 eV Core-core repulsion = 24425.575823 eV Total energy + Delta-G solvation = -4055.675876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36713 -39.11968 -37.60640 -36.98666 -36.15394 -35.00084 -32.72534 -31.99215 -30.65255 -29.76881 -29.20851 -27.13270 -25.99955 -24.48631 -23.07743 -22.91493 -22.43289 -21.42183 -18.63776 -18.22852 -16.86562 -16.44374 -16.37063 -15.97348 -15.76155 -15.48663 -15.28097 -14.95866 -14.56258 -14.49262 -14.37572 -13.98604 -13.78075 -13.38188 -12.94332 -12.73079 -12.35089 -12.22740 -12.01870 -11.90580 -11.79631 -11.57439 -11.54455 -11.34782 -11.28596 -11.06290 -10.95348 -10.87194 -10.67844 -10.55241 -10.48786 -10.16847 -9.75979 -9.41721 -9.04090 -8.78429 -8.57119 -8.03099 -7.78487 -6.22231 -4.30159 1.22648 1.41771 2.35885 2.96805 3.19121 3.26870 3.29564 3.32158 3.72451 4.03587 4.14552 4.31154 4.85142 4.93777 5.07100 5.13852 5.18502 5.29935 5.34250 5.38588 5.47428 5.48149 5.58832 5.63146 5.64346 5.67469 5.80501 5.83912 5.94168 5.99314 6.05498 6.19764 6.29377 6.31196 6.36305 6.50523 6.72028 6.78081 7.23090 7.44008 7.45880 7.58032 7.74137 8.02343 8.24381 8.73352 8.90774 9.37502 10.83747 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009143 B = 0.004625 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.587740 B = 6052.328454 C = 8179.404797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.228 3.772 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.524 3.476 16 O -0.554 6.554 17 C 0.065 3.935 18 H 0.121 0.879 19 C -0.174 4.174 20 O -0.279 6.279 21 C 0.149 3.851 22 C -0.196 4.196 23 C -0.073 4.073 24 C -0.155 4.155 25 C -0.078 4.078 26 C -0.074 4.074 27 Cl -0.061 7.061 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 5.662 -6.872 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.109 3.891 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.523 5.523 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.310 3.690 16 O -0.434 6.434 17 C 0.006 3.994 18 H 0.138 0.862 19 C -0.231 4.231 20 O -0.190 6.190 21 C 0.101 3.899 22 C -0.215 4.215 23 C -0.092 4.092 24 C -0.174 4.174 25 C -0.097 4.097 26 C -0.101 4.101 27 Cl -0.033 7.033 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.397 6.255 -6.784 9.236 hybrid contribution 0.677 -0.459 0.375 0.900 sum 0.280 5.796 -6.409 8.646 Atomic orbital electron populations 1.22683 0.82133 1.02411 0.99187 1.88055 1.18692 1.27364 1.95215 1.23018 0.95153 0.84991 0.99883 1.21371 0.91246 0.99669 0.87719 1.48045 1.63032 1.09672 1.10741 1.19735 0.97763 0.72420 0.99192 1.21548 0.96255 0.92380 1.48201 0.92174 1.24902 0.97274 0.96513 0.94764 1.69923 1.32903 1.02348 1.47173 0.86610 0.84480 0.78404 0.78770 1.20419 1.20976 1.19687 1.19830 0.78218 0.86636 0.84293 1.90628 1.55595 1.14600 1.82541 1.22400 0.96186 0.90825 0.90017 0.86189 1.22375 0.98196 1.01697 1.00853 1.86228 1.46614 1.35398 1.50802 1.18802 0.88698 0.91747 0.90613 1.21537 1.02779 0.94035 1.03104 1.21078 0.93675 1.00155 0.94263 1.20965 1.01689 0.92176 1.02529 1.20841 0.95856 0.96375 0.96604 1.20188 1.00912 0.84880 1.04102 1.98358 1.96244 1.12034 1.96620 0.89836 0.94727 0.94629 0.93128 0.93295 0.89350 0.89291 0.92566 0.94169 0.92485 0.91574 0.91228 0.88950 0.83498 0.85156 0.85305 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.49 9.28 -35.23 -0.33 -6.82 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.24 5.83 -4.04 -0.02 2.21 16 5 N -0.58 -12.12 2.44 -175.06 -0.43 -12.55 16 6 C 0.23 5.22 4.57 -5.19 -0.02 5.20 16 7 C -0.55 -13.62 8.34 -34.44 -0.29 -13.91 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.38 13.29 55.43 0.74 -22.65 16 11 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.52 11.18 6.92 -10.99 -0.08 11.10 16 16 O -0.55 -12.92 16.17 -13.67 -0.22 -13.14 16 17 C 0.06 1.25 1.83 -27.88 -0.05 1.20 16 18 H 0.12 2.45 4.89 -51.93 -0.25 2.19 16 19 C -0.17 -2.92 8.88 37.16 0.33 -2.59 16 20 O -0.28 -5.44 8.86 -38.73 -0.34 -5.78 16 21 C 0.15 2.56 6.59 -39.19 -0.26 2.30 16 22 C -0.20 -3.06 8.31 -39.44 -0.33 -3.38 16 23 C -0.07 -0.95 10.04 -39.60 -0.40 -1.35 16 24 C -0.16 -1.81 10.04 -39.56 -0.40 -2.20 16 25 C -0.08 -0.98 9.83 -39.57 -0.39 -1.37 16 26 C -0.07 -1.15 6.33 -39.36 -0.25 -1.40 16 27 Cl -0.06 -0.96 28.50 -51.86 -1.48 -2.44 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 34 H 0.09 1.56 7.39 -51.93 -0.38 1.18 16 35 H 0.06 1.40 6.89 -51.92 -0.36 1.04 16 36 H 0.04 0.93 4.64 -51.93 -0.24 0.69 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.04 6.82 -51.93 -0.35 0.68 16 40 H 0.09 1.61 5.78 -51.93 -0.30 1.31 16 41 H 0.15 2.36 5.33 -52.49 -0.28 2.08 16 42 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -29.71 378.66 -8.22 -37.93 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.94 Total: 4.81 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.90 Total: 0.01 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.31 Total: -35.19 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.89 Total: -25.74 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.71 -8.22 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113448113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.190 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds