Wall clock time and date at job start Tue Mar 31 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50699 * 109.47007 * 120.00094 * 2 1 3 5 5 H 1.08001 * 120.00016 * 85.93996 * 4 2 1 6 6 C 1.37873 * 120.00043 * 265.93984 * 4 2 1 7 7 N 1.31520 * 120.00097 * 177.91068 * 6 4 2 8 8 Si 1.86802 * 119.99956 * 357.90765 * 6 4 2 9 9 H 1.48497 * 109.47186 * 274.93637 * 8 6 4 10 10 H 1.48501 * 109.46871 * 34.93648 * 8 6 4 11 11 H 1.48506 * 109.46857 * 154.93730 * 8 6 4 12 12 O 1.45201 * 109.47061 * 239.99743 * 2 1 3 13 13 C 1.34234 * 116.99654 * 90.00561 * 12 2 1 14 14 O 1.20826 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46971 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46892 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47097 * 180.02562 * 17 16 15 19 19 C 1.34776 * 120.00047 * 180.02562 * 18 17 16 20 20 O 1.21585 * 119.99941 * 359.97438 * 19 18 17 21 21 C 1.47574 * 120.00159 * 180.02562 * 19 18 17 22 22 C 1.39738 * 120.14030 * 359.72091 * 21 19 18 23 23 C 1.37731 * 119.90575 * 179.74308 * 22 21 19 24 24 C 1.38761 * 120.18965 * 0.53357 * 23 22 21 25 25 F 1.35101 * 119.85801 * 179.75700 * 24 23 22 26 26 C 1.38495 * 120.28547 * 359.74188 * 24 23 22 27 27 C 1.38198 * 120.09189 * 359.97438 * 26 24 23 28 28 F 1.35104 * 120.09349 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.47004 * 176.63712 * 1 2 3 30 30 H 1.08991 * 109.47202 * 296.63782 * 1 2 3 31 31 H 1.08999 * 109.46923 * 56.64323 * 1 2 3 32 32 H 0.96996 * 119.99728 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46709 * 299.99771 * 15 13 12 34 34 H 1.08999 * 109.47068 * 59.99430 * 15 13 12 35 35 H 1.09001 * 109.47555 * 299.99667 * 16 15 13 36 36 H 1.08999 * 109.47351 * 60.00018 * 16 15 13 37 37 H 1.08996 * 109.47523 * 299.99931 * 17 16 15 38 38 H 1.08998 * 109.46897 * 60.00527 * 17 16 15 39 39 H 0.97003 * 119.99932 * 359.97438 * 18 17 16 40 40 H 1.08007 * 120.04599 * 0.02562 * 22 21 19 41 41 H 1.08000 * 119.90495 * 180.27312 * 23 22 21 42 42 H 1.07996 * 119.95413 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1499 -1.7840 1.2240 6 6 2.3418 0.0101 2.3644 7 7 2.7409 -0.6136 3.4514 8 14 2.1943 1.8723 2.3570 9 1 3.4424 2.4656 1.8135 10 1 1.0444 2.2743 1.5077 11 1 1.9788 2.3572 3.7440 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 2.8634 0.4890 -4.6371 17 6 3.3739 -0.1617 -5.9243 18 7 3.5123 0.8592 -6.9659 19 6 3.9495 0.5146 -8.1934 20 8 4.2295 -0.6434 -8.4361 21 6 4.0896 1.5430 -9.2424 22 6 3.7641 2.8740 -8.9681 23 6 3.9016 3.8308 -9.9493 24 6 4.3519 3.4750 -11.2126 25 9 4.4797 4.4182 -12.1715 26 6 4.6713 2.1573 -11.4948 27 6 4.5433 1.1887 -10.5174 28 9 4.8543 -0.0969 -10.7928 29 1 -0.3633 -1.0259 -0.0603 30 1 -0.3633 0.4607 0.9185 31 1 -0.3633 0.5651 -0.8584 32 1 2.9590 -0.1066 4.2490 33 1 3.6885 -1.0400 -3.3631 34 1 2.0106 -1.3373 -3.8773 35 1 1.8941 0.9517 -4.8231 36 1 3.5720 1.2495 -4.3091 37 1 4.3432 -0.6240 -5.7382 38 1 2.6655 -0.9223 -6.2525 39 1 3.2886 1.7830 -6.7724 40 1 3.4095 3.1528 -7.9868 41 1 3.6543 4.8602 -9.7359 42 1 5.0217 1.8864 -12.4798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:19 Heat of formation + Delta-G solvation = -198.299256 kcal Electronic energy + Delta-G solvation = -27766.273755 eV Core-core repulsion = 23154.240228 eV Total energy + Delta-G solvation = -4612.033526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.69129 -49.42788 -40.51463 -39.75126 -38.67464 -36.41653 -35.60035 -33.28490 -33.04298 -31.67817 -31.19180 -30.59536 -27.45162 -25.43770 -24.54638 -23.75775 -22.62872 -21.39362 -20.92939 -19.60747 -18.98243 -18.18494 -17.84304 -17.45557 -16.67410 -16.60445 -16.40449 -16.28107 -16.09029 -15.87939 -15.67920 -15.33410 -15.14582 -15.00495 -14.41171 -14.28667 -14.02299 -13.60200 -13.02812 -12.95807 -12.84515 -12.65706 -12.46180 -12.42480 -12.30109 -12.15063 -11.75346 -11.60714 -11.16680 -11.07204 -11.04124 -10.70436 -10.39971 -10.07339 -9.84214 -9.79638 -9.55897 -9.53694 -9.32568 -9.16470 -8.77566 -6.31003 -4.35312 -0.10939 0.31846 2.15008 2.59401 2.82269 2.99683 3.14737 3.16483 3.25094 3.29781 3.50678 3.67096 3.82265 4.06531 4.13793 4.22095 4.40249 4.68871 4.79023 4.83239 4.96361 5.03288 5.06101 5.20717 5.26295 5.30101 5.34442 5.37084 5.54144 5.66945 5.89521 5.93683 5.98419 6.06482 6.11458 6.38332 6.46152 6.63693 7.02214 7.09244 7.32728 7.48690 7.75338 8.19087 8.58206 8.79299 9.27691 10.80336 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.001697 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.665512 B =16492.234203 C =17264.730492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.085 0.915 6 C 0.081 3.919 7 N -0.882 5.882 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.281 1.281 12 O -0.347 6.347 13 C 0.451 3.549 14 O -0.530 6.530 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.119 3.881 18 N -0.722 5.722 19 C 0.558 3.442 20 O -0.521 6.521 21 C -0.184 4.184 22 C -0.027 4.027 23 C -0.171 4.171 24 C 0.158 3.842 25 F -0.125 7.125 26 C -0.204 4.204 27 C 0.193 3.807 28 F -0.104 7.104 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.270 0.730 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 8.808 -29.379 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.104 0.896 6 C -0.123 4.123 7 N -0.518 5.518 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.207 1.207 12 O -0.263 6.263 13 C 0.295 3.705 14 O -0.422 6.422 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.004 4.004 18 N -0.374 5.374 19 C 0.344 3.656 20 O -0.398 6.398 21 C -0.189 4.189 22 C -0.046 4.046 23 C -0.190 4.190 24 C 0.138 3.862 25 F -0.103 7.103 26 C -0.224 4.224 27 C 0.172 3.828 28 F -0.082 7.082 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.443 8.279 -29.297 30.542 hybrid contribution -0.081 1.533 0.067 1.537 sum 2.361 9.812 -29.230 30.924 Atomic orbital electron populations 1.22262 0.97597 1.01126 1.00212 1.20958 0.91387 0.94030 0.80653 0.93621 1.20797 1.45542 0.96502 0.92887 0.89648 1.24914 0.93532 0.98600 0.95300 1.69855 1.43268 1.36306 1.02377 0.86946 0.79901 0.85710 0.77750 1.19633 1.18522 1.20702 1.86663 1.75402 1.43457 1.20771 1.23426 0.74672 0.86049 0.86392 1.90579 1.49482 1.17115 1.84975 1.21204 1.04378 0.99208 0.90452 1.21589 1.03327 0.98381 0.92578 1.21448 1.02314 0.90538 0.86116 1.45855 1.67733 1.12652 1.11188 1.17827 0.77903 0.87771 0.82094 1.90879 1.48957 1.19119 1.80815 1.20148 1.09020 0.95374 0.94322 1.21099 0.93758 0.90147 0.99575 1.21175 1.04191 1.01963 0.91687 1.17530 0.97296 0.85281 0.86127 1.91574 1.92971 1.63359 1.62414 1.21059 1.08110 0.91443 1.01747 1.17258 0.94510 0.79357 0.91708 1.91652 1.89107 1.33730 1.93699 0.92523 0.91731 0.95174 0.91964 0.87580 0.87763 0.90238 0.90159 0.90643 0.90700 0.76326 0.83313 0.83073 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.50 37.16 0.35 -2.99 16 2 C 0.18 4.48 2.16 -27.88 -0.06 4.42 16 3 H 0.05 1.17 4.49 -51.93 -0.23 0.94 16 4 C -0.52 -14.55 9.25 -34.44 -0.32 -14.87 16 5 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.88 -25.94 13.96 55.43 0.77 -25.17 16 8 Si 0.87 21.05 26.69 -169.99 -4.54 16.52 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.26 -6.12 6.82 56.52 0.39 -5.73 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 O -0.35 -7.66 9.86 -39.27 -0.39 -8.05 16 13 C 0.45 8.27 7.93 36.01 0.29 8.56 16 14 O -0.53 -10.91 15.20 -18.75 -0.29 -11.19 16 15 C -0.11 -1.36 5.81 -27.88 -0.16 -1.52 16 16 C -0.12 -1.17 4.62 -26.73 -0.12 -1.29 16 17 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 18 N -0.72 -5.73 5.51 -61.34 -0.34 -6.07 16 19 C 0.56 5.73 7.76 -12.45 -0.10 5.63 16 20 O -0.52 -7.46 15.34 5.29 0.08 -7.38 16 21 C -0.18 -1.47 5.88 -104.91 -0.62 -2.08 16 22 C -0.03 -0.13 9.53 -39.21 -0.37 -0.50 16 23 C -0.17 -0.76 10.01 -39.57 -0.40 -1.16 16 24 C 0.16 0.91 7.30 -39.29 -0.29 0.63 16 25 F -0.12 -0.80 17.26 2.25 0.04 -0.76 16 26 C -0.20 -1.29 9.99 -39.50 -0.39 -1.69 16 27 C 0.19 1.65 7.28 -38.98 -0.28 1.36 16 28 F -0.10 -1.15 15.55 2.25 0.04 -1.11 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.39 7.82 -51.93 -0.41 0.99 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 2.06 6.50 -40.82 -0.27 1.80 16 40 H 0.15 0.31 6.40 -52.48 -0.34 -0.03 16 41 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -34.71 371.31 -6.66 -41.36 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.04 Total: -1.43 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.59 Total: -2.31 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.44 Total: -31.24 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.59 Total: -26.62 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.07 Total: -1.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.54 Total: 16.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.71 -6.66 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.936 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds