Wall clock time and date at job start Tue Mar 31 2020 23:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37880 * 120.00482 * 65.37227 * 4 2 1 7 7 N 1.31515 * 120.00110 * 184.89557 * 6 4 2 8 8 Si 1.86800 * 119.99570 * 5.16715 * 6 4 2 9 9 H 1.48499 * 109.47189 * 269.72164 * 8 6 4 10 10 H 1.48497 * 109.47262 * 29.72703 * 8 6 4 11 11 H 1.48499 * 109.46978 * 149.72477 * 8 6 4 12 12 O 1.45198 * 109.47247 * 120.00000 * 2 1 3 13 13 C 1.34226 * 116.99837 * 270.00234 * 12 2 1 14 14 O 1.20826 * 120.00738 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99776 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46878 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46953 * 180.02562 * 16 15 13 18 18 N 1.46508 * 109.47423 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00096 * 179.97438 * 18 17 16 20 20 O 1.21585 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.47571 * 119.99857 * 180.02562 * 19 18 17 22 22 C 1.39735 * 120.14038 * 359.71419 * 21 19 18 23 23 C 1.37735 * 119.90379 * 179.74566 * 22 21 19 24 24 C 1.38769 * 120.19183 * 0.54152 * 23 22 21 25 25 F 1.35095 * 119.85722 * 179.76039 * 24 23 22 26 26 C 1.38498 * 120.28144 * 359.73878 * 24 23 22 27 27 C 1.38198 * 120.09549 * 359.97438 * 26 24 23 28 28 F 1.35093 * 120.09688 * 179.97438 * 27 26 24 29 29 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 30 30 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 31 31 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 32 32 H 0.96995 * 120.00010 * 355.26674 * 7 6 4 33 33 H 1.08994 * 109.47097 * 299.99942 * 15 13 12 34 34 H 1.09003 * 109.46753 * 59.99941 * 15 13 12 35 35 H 1.09003 * 109.47496 * 299.99762 * 16 15 13 36 36 H 1.08997 * 109.47596 * 60.00260 * 16 15 13 37 37 H 1.09004 * 109.46902 * 299.99584 * 17 16 15 38 38 H 1.08996 * 109.47610 * 59.99787 * 17 16 15 39 39 H 0.96998 * 119.99576 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.04738 * 0.03657 * 22 21 19 41 41 H 1.08003 * 119.91009 * 180.27780 * 23 22 21 42 42 H 1.07996 * 119.94745 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4798 7 7 2.1461 -0.8448 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3175 -2.7140 10 1 1.3161 2.3281 -1.4626 11 1 1.4542 2.1615 -3.8779 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9982 1.2519 2.2504 15 6 2.7183 -0.5772 3.5495 16 6 2.8635 0.4890 4.6370 17 6 3.3729 -0.1619 5.9246 18 7 3.5115 0.8590 6.9662 19 6 3.9478 0.5142 8.1939 20 8 4.2261 -0.6441 8.4371 21 6 4.0868 1.5425 9.2432 22 6 3.7725 2.8754 8.9655 23 6 3.8991 3.8302 9.9501 24 6 4.3484 3.4743 11.2138 25 9 4.4746 4.4171 12.1730 26 6 4.6677 2.1565 11.4959 27 6 4.5395 1.1878 10.5186 28 9 4.8514 -0.0975 10.7936 29 1 -0.3633 -1.0237 -0.0900 30 1 -0.3633 0.4339 0.9316 31 1 -0.3633 0.5898 -0.8416 32 1 2.6359 -1.6778 -3.4732 33 1 2.0088 -1.3369 3.8774 34 1 3.6872 -1.0409 3.3639 35 1 3.5733 1.2485 4.3089 36 1 1.8949 0.9531 4.8227 37 1 2.6635 -0.9215 6.2530 38 1 4.3416 -0.6256 5.7387 39 1 3.2891 1.7830 6.7723 40 1 3.4264 3.1557 7.9816 41 1 3.6519 4.8597 9.7368 42 1 5.0173 1.8855 12.4812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:22 Heat of formation + Delta-G solvation = -198.190311 kcal Electronic energy + Delta-G solvation = -27742.633326 eV Core-core repulsion = 23130.604524 eV Total energy + Delta-G solvation = -4612.028802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.70276 -49.44412 -40.53453 -39.82081 -38.69099 -36.47626 -35.65237 -33.37714 -33.15397 -31.69363 -31.20184 -30.49347 -27.49877 -24.99972 -24.54098 -23.76660 -22.64046 -21.41234 -20.93796 -19.61859 -18.99736 -18.20321 -17.89570 -17.72799 -16.95251 -16.68505 -16.41173 -16.33250 -16.10595 -15.90108 -15.64869 -15.38259 -15.10329 -15.01811 -14.42674 -14.25139 -13.89877 -13.62182 -13.10826 -12.98428 -12.92450 -12.86395 -12.50889 -12.38279 -12.17642 -12.13314 -11.85606 -11.70298 -11.49397 -11.11858 -10.70414 -10.42092 -10.17366 -10.07593 -9.85466 -9.79514 -9.69977 -9.57734 -9.34356 -8.80646 -8.62084 -6.65078 -4.30321 -0.12293 0.30638 2.13444 2.56980 2.75908 2.98061 3.13576 3.26426 3.35667 3.45235 3.48831 3.65825 3.81009 4.04741 4.12643 4.32173 4.38921 4.66686 4.75066 4.78556 4.95282 5.04083 5.11454 5.19385 5.24968 5.28804 5.29862 5.31713 5.49281 5.59075 5.85147 5.90190 5.96905 6.03482 6.14779 6.29525 6.40093 6.58339 6.99961 7.04656 7.32830 7.73222 7.73811 8.19830 8.41538 8.78216 9.39576 10.77720 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.001645 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.879236 B =17012.613820 C =17851.661229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.188 3.812 3 H 0.046 0.954 4 C -0.600 4.600 5 H 0.069 0.931 6 C 0.035 3.965 7 N -0.900 5.900 8 Si 1.047 2.953 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.283 1.283 12 O -0.345 6.345 13 C 0.451 3.549 14 O -0.526 6.526 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.119 3.881 18 N -0.722 5.722 19 C 0.558 3.442 20 O -0.521 6.521 21 C -0.185 4.185 22 C -0.027 4.027 23 C -0.171 4.171 24 C 0.158 3.842 25 F -0.125 7.125 26 C -0.204 4.204 27 C 0.193 3.807 28 F -0.104 7.104 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 9.158 30.352 31.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.134 3.866 3 H 0.063 0.937 4 C -0.638 4.638 5 H 0.087 0.913 6 C -0.170 4.170 7 N -0.534 5.534 8 Si 0.876 3.124 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.209 1.209 12 O -0.260 6.260 13 C 0.295 3.705 14 O -0.417 6.417 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.004 4.004 18 N -0.374 5.374 19 C 0.344 3.656 20 O -0.398 6.398 21 C -0.189 4.189 22 C -0.046 4.046 23 C -0.190 4.190 24 C 0.138 3.862 25 F -0.103 7.103 26 C -0.224 4.224 27 C 0.172 3.828 28 F -0.082 7.082 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.845 9.689 29.359 31.047 hybrid contribution 0.494 -0.638 1.178 1.428 sum 3.340 9.051 30.537 32.024 Atomic orbital electron populations 1.22458 0.98333 1.01889 0.99658 1.21083 0.90726 0.94554 0.80198 0.93682 1.22007 1.40950 1.11158 0.89690 0.91294 1.25695 0.96473 1.03614 0.91243 1.70814 1.35893 1.16870 1.29793 0.83973 0.76603 0.75485 0.76371 1.20546 1.20065 1.20931 1.86536 1.75522 1.43071 1.20881 1.23410 0.74778 0.86025 0.86337 1.90588 1.49187 1.16990 1.84898 1.21186 1.04329 0.99246 0.90370 1.21586 1.03399 0.98323 0.92545 1.21441 1.02297 0.90552 0.86116 1.45848 1.67798 1.12624 1.11166 1.17827 0.77879 0.87783 0.82087 1.90879 1.48976 1.19105 1.80820 1.20143 1.09141 0.95323 0.94283 1.21097 0.93759 0.90136 0.99575 1.21180 1.04200 1.02005 0.91624 1.17533 0.97258 0.85290 0.86130 1.91573 1.92970 1.63369 1.62389 1.21060 1.08120 0.91437 1.01744 1.17258 0.94483 0.79354 0.91733 1.91649 1.89066 1.33762 1.93714 0.92084 0.94721 0.92260 0.91858 0.87740 0.87638 0.90103 0.90177 0.90709 0.90658 0.76305 0.83309 0.83056 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.14 37.16 0.34 -3.35 16 2 C 0.19 4.68 2.14 -27.88 -0.06 4.62 16 3 H 0.05 1.17 5.66 -51.93 -0.29 0.88 16 4 C -0.60 -17.02 9.25 -34.44 -0.32 -17.34 16 5 H 0.07 2.10 8.04 -52.49 -0.42 1.68 16 6 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 7 N -0.90 -27.11 13.70 55.43 0.76 -26.35 16 8 Si 1.05 24.98 25.28 -169.99 -4.30 20.68 16 9 H -0.28 -6.22 6.82 56.52 0.39 -5.84 16 10 H -0.27 -6.28 6.35 56.52 0.36 -5.92 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 O -0.34 -7.66 9.86 -39.25 -0.39 -8.05 16 13 C 0.45 8.23 7.93 36.01 0.29 8.51 16 14 O -0.53 -10.72 15.20 -18.75 -0.29 -11.00 16 15 C -0.11 -1.33 5.81 -27.88 -0.16 -1.49 16 16 C -0.12 -1.14 4.62 -26.73 -0.12 -1.26 16 17 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 18 N -0.72 -5.60 5.51 -61.33 -0.34 -5.94 16 19 C 0.56 5.65 7.76 -12.46 -0.10 5.55 16 20 O -0.52 -7.39 15.34 5.29 0.08 -7.31 16 21 C -0.18 -1.44 5.88 -104.91 -0.62 -2.06 16 22 C -0.03 -0.12 9.53 -39.21 -0.37 -0.50 16 23 C -0.17 -0.74 10.01 -39.57 -0.40 -1.13 16 24 C 0.16 0.90 7.30 -39.29 -0.29 0.61 16 25 F -0.12 -0.78 17.26 2.25 0.04 -0.75 16 26 C -0.20 -1.27 9.99 -39.50 -0.39 -1.67 16 27 C 0.19 1.62 7.28 -38.97 -0.28 1.34 16 28 F -0.10 -1.14 15.55 2.25 0.04 -1.10 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.30 4.41 -51.93 -0.23 1.08 16 32 H 0.27 8.11 8.72 -40.82 -0.36 7.75 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 1.98 6.50 -40.82 -0.27 1.72 16 40 H 0.15 0.28 6.40 -52.49 -0.34 -0.05 16 41 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -35.22 366.61 -6.46 -41.67 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.98 Total: -1.12 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.61 Total: -6.26 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.42 Total: -32.29 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.59 Total: -26.36 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.07 Total: -1.85 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.30 Total: 20.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.22 -6.46 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.518 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds