Wall clock time and date at job start Tue Mar 31 2020 23:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99689 * 2 1 4 4 N 1.34768 * 120.00428 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00427 * 175.62127 * 4 2 1 6 6 H 1.09002 * 109.47542 * 183.30537 * 5 4 2 7 7 C 1.52994 * 109.47290 * 303.30914 * 5 4 2 8 8 C 1.50699 * 109.47231 * 303.00817 * 7 5 4 9 9 O 1.20826 * 120.00122 * 0.02562 * 8 7 5 10 10 O 1.34227 * 120.00242 * 179.97438 * 8 7 5 11 11 C 1.45195 * 117.00362 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47052 * 329.99966 * 11 10 8 13 13 C 1.53004 * 109.47384 * 89.99726 * 11 10 8 14 14 C 1.50700 * 109.47267 * 210.00265 * 11 10 8 15 15 H 1.07994 * 120.00123 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99821 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00492 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99719 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47171 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47264 * 120.00070 * 18 16 14 21 21 H 1.48507 * 109.47125 * 239.99763 * 18 16 14 22 22 C 1.50706 * 109.47165 * 63.30794 * 5 4 2 23 23 C 1.38421 * 120.02137 * 44.49109 * 22 5 4 24 24 F 1.35095 * 120.01483 * 359.95186 * 23 22 5 25 25 C 1.38473 * 119.97533 * 179.97438 * 23 22 5 26 26 C 1.38208 * 120.02114 * 0.26650 * 25 23 22 27 27 C 1.38211 * 120.05398 * 359.45401 * 26 25 23 28 28 C 1.38417 * 120.02583 * 224.46262 * 22 5 4 29 29 F 1.35092 * 120.01367 * 0.02562 * 28 22 5 30 30 H 1.09000 * 109.46817 * 239.99682 * 1 2 3 31 31 H 1.09004 * 109.47195 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47339 * 119.99520 * 1 2 3 33 33 H 0.97005 * 119.99463 * 355.61841 * 4 2 1 34 34 H 1.09004 * 109.47208 * 63.00588 * 7 5 4 35 35 H 1.08999 * 109.47554 * 183.00655 * 7 5 4 36 36 H 1.09004 * 109.47123 * 180.02562 * 13 11 10 37 37 H 1.08996 * 109.46887 * 300.00245 * 13 11 10 38 38 H 1.09005 * 109.46552 * 60.00386 * 13 11 10 39 39 H 0.96993 * 120.00445 * 180.02562 * 17 16 14 40 40 H 1.08000 * 119.99038 * 179.97438 * 25 23 22 41 41 H 1.08000 * 119.97540 * 179.70484 * 26 25 23 42 42 H 1.07992 * 119.99274 * 180.25163 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6426 -1.1689 -0.0974 6 1 4.0026 -2.1968 -0.1418 7 6 4.0708 -0.4234 -1.3630 8 6 3.4269 -1.0640 -2.5654 9 8 2.6996 -2.0186 -2.4246 10 8 3.6604 -0.5736 -3.7929 11 6 3.0063 -1.2403 -4.9046 12 1 2.8681 -2.2947 -4.6655 13 6 1.6438 -0.5920 -5.1580 14 6 3.8606 -1.1131 -6.1396 15 1 4.8008 -0.5838 -6.0936 16 6 3.4418 -1.6726 -7.3281 17 7 2.2971 -2.3176 -7.3840 18 14 4.5004 -1.5143 -8.8591 19 1 5.7297 -0.7474 -8.5338 20 1 4.8742 -2.8671 -9.3445 21 1 3.7385 -0.8022 -9.9163 22 6 4.2270 -0.4838 1.1111 23 6 3.7338 -0.7661 2.3733 24 9 2.7277 -1.6552 2.5224 25 6 4.2719 -0.1365 3.4830 26 6 5.2972 0.7776 3.3302 27 6 5.7943 1.0560 2.0710 28 6 5.2577 0.4277 0.9597 29 9 5.7400 0.7040 -0.2715 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3634 1.0277 0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 1.6980 -2.0059 0.0633 34 1 3.7573 0.6183 -1.2947 35 1 5.1552 -0.4706 -1.4632 36 1 1.1526 -1.0928 -5.9923 37 1 1.0260 -0.6840 -4.2647 38 1 1.7821 0.4625 -5.3972 39 1 2.0026 -2.7115 -8.2200 40 1 3.8870 -0.3562 4.4679 41 1 5.7130 1.2718 4.1958 42 1 6.5982 1.7673 1.9531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:25 Heat of formation + Delta-G solvation = -172.051426 kcal Electronic energy + Delta-G solvation = -30894.975864 eV Core-core repulsion = 26284.080529 eV Total energy + Delta-G solvation = -4610.895335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.38711 -49.17370 -40.35043 -39.12963 -38.69948 -36.04950 -34.98774 -33.23639 -32.30341 -30.53337 -30.31314 -29.57267 -28.83678 -25.32959 -24.93438 -23.11645 -22.37516 -21.58250 -20.16205 -19.49827 -18.32730 -17.64977 -17.58742 -16.80265 -16.54148 -16.29570 -16.08313 -15.78557 -15.61864 -15.47442 -15.21099 -15.09726 -14.82214 -14.55701 -14.05964 -13.73184 -13.56019 -13.27711 -12.88888 -12.63165 -12.58158 -12.40661 -12.15756 -12.12426 -11.89503 -11.81516 -11.44587 -11.25777 -11.08309 -11.03654 -10.80081 -10.33475 -10.26437 -9.84847 -9.54830 -9.44275 -9.16955 -8.97699 -8.93610 -8.86696 -8.47883 -6.17242 -4.23518 0.71661 0.74548 2.70584 3.02994 3.08935 3.24555 3.30129 3.32494 3.37416 3.63709 3.70883 4.18020 4.26437 4.37485 4.47953 4.55821 4.80651 4.87505 5.01189 5.13524 5.15955 5.31232 5.43227 5.47860 5.60018 5.64310 5.69947 5.74475 5.87874 5.89331 5.91899 6.06968 6.44743 6.51766 6.66040 6.90687 6.94174 7.21201 7.58986 7.62453 7.75212 7.96388 8.17130 8.29866 8.68243 8.93244 9.42061 10.90319 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.003182 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.586074 B = 8796.587445 C = 9671.970154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.543 6.543 4 N -0.709 5.709 5 C 0.210 3.790 6 H 0.112 0.888 7 C -0.155 4.155 8 C 0.456 3.544 9 O -0.526 6.526 10 O -0.356 6.356 11 C 0.216 3.784 12 H 0.046 0.954 13 C -0.152 4.152 14 C -0.519 4.519 15 H 0.069 0.931 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.154 4.154 23 C 0.141 3.859 24 F -0.127 7.127 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.163 4.163 28 C 0.148 3.852 29 F -0.117 7.117 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.013 0.987 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 3.581 23.381 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.421 6.421 4 N -0.360 5.360 5 C 0.104 3.896 6 H 0.130 0.870 7 C -0.193 4.193 8 C 0.299 3.701 9 O -0.417 6.417 10 O -0.272 6.272 11 C 0.163 3.837 12 H 0.063 0.937 13 C -0.210 4.210 14 C -0.557 4.557 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.157 4.157 23 C 0.122 3.878 24 F -0.106 7.106 25 C -0.186 4.186 26 C -0.083 4.083 27 C -0.182 4.182 28 C 0.128 3.872 29 F -0.096 7.096 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.032 0.968 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.501 3.925 23.151 23.614 hybrid contribution -0.057 -0.578 -1.098 1.242 sum 2.445 3.347 22.053 22.439 Atomic orbital electron populations 1.21901 0.91772 1.05308 1.04356 1.20821 0.90750 0.83460 0.74973 1.90672 1.70612 1.31358 1.49433 1.45846 1.05897 1.09475 1.74778 1.19357 0.81021 0.99760 0.89413 0.87005 1.22578 1.03984 1.03222 0.89491 1.23269 0.79039 0.81795 0.85956 1.90532 1.36551 1.27612 1.87013 1.86493 1.67209 1.57897 1.15553 1.20599 0.90139 0.92765 0.80179 0.93653 1.22138 0.97800 1.00254 1.00831 1.21093 1.06123 1.35988 0.92542 0.91271 1.24890 0.95476 0.94681 0.98976 1.69905 1.20295 1.35553 1.27069 0.86227 0.80216 0.77927 0.81821 1.19440 1.20763 1.20721 1.20150 0.99091 1.01365 0.95094 1.17072 0.87515 0.90621 0.92622 1.91507 1.57429 1.65325 1.96315 1.21153 0.99571 0.99653 0.98251 1.20819 0.94703 0.95740 0.97006 1.21210 1.02914 1.02519 0.91527 1.17113 0.94004 0.95594 0.80488 1.91495 1.86737 1.91969 1.39359 0.89652 0.89134 0.89021 0.75484 0.85834 0.85266 0.88316 0.96755 0.94518 0.92513 0.84181 0.84029 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.32 36.00 0.37 -1.55 16 2 C 0.51 7.53 7.30 -10.99 -0.08 7.45 16 3 O -0.54 -9.62 14.32 5.55 0.08 -9.54 16 4 N -0.71 -9.66 2.43 -54.94 -0.13 -9.79 16 5 C 0.21 2.94 2.51 -69.09 -0.17 2.77 16 6 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 7 C -0.15 -2.60 3.49 -27.89 -0.10 -2.69 16 8 C 0.46 9.76 7.75 36.01 0.28 10.04 16 9 O -0.53 -11.74 14.30 -18.75 -0.27 -12.01 16 10 O -0.36 -8.90 9.86 -39.25 -0.39 -9.29 16 11 C 0.22 5.94 2.56 -27.88 -0.07 5.87 16 12 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 13 C -0.15 -3.98 9.33 37.16 0.35 -3.64 16 14 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 18 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.15 -1.92 4.31 -104.49 -0.45 -2.37 16 23 C 0.14 1.56 7.04 -39.43 -0.28 1.29 16 24 F -0.13 -1.42 15.75 2.25 0.04 -1.38 16 25 C -0.17 -1.43 10.03 -39.51 -0.40 -1.82 16 26 C -0.06 -0.48 10.04 -39.60 -0.40 -0.88 16 27 C -0.16 -1.48 10.03 -39.50 -0.40 -1.87 16 28 C 0.15 1.77 7.05 -39.43 -0.28 1.49 16 29 F -0.12 -1.56 12.62 2.25 0.03 -1.53 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 4.88 8.83 -40.82 -0.36 4.52 16 34 H 0.12 2.25 5.71 -51.93 -0.30 1.96 16 35 H 0.13 1.98 5.90 -51.93 -0.31 1.67 16 36 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -33.70 360.18 -6.63 -40.33 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.00 Total: 5.90 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.02 Total: 0.44 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.49 Total: -34.74 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.58 Total: -30.84 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.06 Total: -2.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.70 -6.63 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.722 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds