Wall clock time and date at job start Tue Mar 31 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00283 * 2 1 4 4 N 1.34776 * 120.00055 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00328 * 184.67928 * 4 2 1 6 6 H 1.08995 * 109.47030 * 322.33962 * 5 4 2 7 7 C 1.53000 * 109.47369 * 202.33776 * 5 4 2 8 8 C 1.50702 * 109.46815 * 65.00218 * 7 5 4 9 9 O 1.20825 * 120.00021 * 359.97438 * 8 7 5 10 10 O 1.34232 * 119.99935 * 180.02562 * 8 7 5 11 11 C 1.45199 * 116.99714 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47536 * 329.99479 * 11 10 8 13 13 C 1.52996 * 109.47439 * 89.99728 * 11 10 8 14 14 C 1.50704 * 109.46652 * 209.99811 * 11 10 8 15 15 H 1.07995 * 120.00401 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99593 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00291 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99917 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47106 * 59.99506 * 18 16 14 20 20 H 1.48493 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46982 * 300.00210 * 18 16 14 22 22 C 1.50704 * 109.47109 * 82.33807 * 5 4 2 23 23 C 1.38421 * 120.02041 * 45.37766 * 22 5 4 24 24 F 1.35097 * 120.01719 * 0.02562 * 23 22 5 25 25 C 1.38481 * 119.97124 * 179.74655 * 23 22 5 26 26 C 1.38206 * 120.02370 * 0.53164 * 25 23 22 27 27 C 1.38215 * 120.04991 * 359.74069 * 26 25 23 28 28 C 1.38417 * 120.02899 * 225.65353 * 22 5 4 29 29 F 1.35107 * 120.00708 * 359.97438 * 28 22 5 30 30 H 1.08996 * 109.47518 * 240.00494 * 1 2 3 31 31 H 1.09003 * 109.47159 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.46725 * 120.00316 * 1 2 3 33 33 H 0.97005 * 119.99568 * 4.68149 * 4 2 1 34 34 H 1.08996 * 109.46920 * 305.00487 * 7 5 4 35 35 H 1.08997 * 109.47012 * 184.99974 * 7 5 4 36 36 H 1.09000 * 109.47608 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47051 * 300.00031 * 13 11 10 38 38 H 1.09001 * 109.47018 * 59.99934 * 13 11 10 39 39 H 0.97000 * 119.99940 * 179.97438 * 17 16 14 40 40 H 1.07996 * 119.98894 * 180.27405 * 25 23 22 41 41 H 1.07994 * 119.97840 * 179.72603 * 26 25 23 42 42 H 1.08004 * 119.98645 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6422 -1.1693 0.1040 6 1 4.0478 -0.3317 -0.4633 7 6 4.1916 -2.4811 -0.4602 8 6 3.8964 -2.5557 -1.9361 9 8 3.3066 -1.6527 -2.4807 10 8 4.2877 -3.6260 -2.6456 11 6 3.9699 -3.6297 -4.0624 12 1 3.0521 -3.0662 -4.2304 13 6 5.1155 -2.9832 -4.8437 14 6 3.7806 -5.0495 -4.5309 15 1 3.8887 -5.8672 -3.8338 16 6 3.4704 -5.3045 -5.8499 17 7 3.3392 -4.3088 -6.6990 18 14 3.2364 -7.0644 -6.4309 19 1 2.1245 -7.6922 -5.6729 20 1 2.9114 -7.0683 -7.8798 21 1 4.4869 -7.8318 -6.2016 22 6 4.0435 -1.0376 1.5507 23 6 3.4097 -1.7991 2.5173 24 9 2.4312 -2.6611 2.1644 25 6 3.7829 -1.6810 3.8456 26 6 4.7802 -0.7954 4.2077 27 6 5.4099 -0.0305 3.2440 28 6 5.0423 -0.1510 1.9144 29 9 5.6583 0.5965 0.9725 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6982 -2.0059 -0.0677 34 1 3.7186 -3.3214 0.0479 35 1 5.2694 -2.5212 -0.3028 36 1 4.8772 -2.9864 -5.9073 37 1 5.2524 -1.9564 -4.5048 38 1 6.0333 -3.5467 -4.6757 39 1 3.1214 -4.4883 -7.6270 40 1 3.2916 -2.2782 4.5995 41 1 5.0676 -0.7007 5.2444 42 1 6.1888 0.6616 3.5281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:30 Heat of formation + Delta-G solvation = -193.326525 kcal Electronic energy + Delta-G solvation = -30362.634918 eV Core-core repulsion = 25750.817025 eV Total energy + Delta-G solvation = -4611.817893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.26837 -49.16900 -40.24877 -39.25705 -38.82595 -36.23096 -35.15319 -33.29186 -32.26708 -30.60407 -30.41891 -29.64481 -28.95978 -25.36556 -24.99433 -23.19155 -22.35077 -21.25807 -20.57185 -19.61062 -18.43620 -17.67916 -17.28789 -16.84092 -16.60595 -16.37469 -16.20526 -15.84186 -15.65907 -15.47183 -15.30248 -15.13104 -14.93979 -14.65145 -14.37821 -13.80754 -13.52456 -13.04102 -12.98065 -12.86870 -12.51160 -12.43012 -12.22298 -12.20928 -12.12067 -11.82133 -11.70398 -11.47014 -11.19561 -11.06588 -10.86219 -10.41296 -10.30432 -9.87782 -9.71975 -9.56718 -9.25304 -9.08341 -9.04679 -8.93763 -8.51433 -6.20543 -4.28074 0.61286 0.66727 2.73255 2.91679 2.96320 3.23275 3.24378 3.28212 3.30422 3.52656 3.60888 4.10701 4.22126 4.32871 4.42292 4.51029 4.63980 4.80871 4.90929 5.10496 5.12947 5.25255 5.36804 5.38680 5.44691 5.50094 5.61282 5.65273 5.74732 5.80222 5.80818 5.93197 6.39500 6.45338 6.62205 6.87298 6.89513 7.13874 7.53260 7.57234 7.70448 7.91072 8.11465 8.29761 8.59120 8.84608 9.37497 10.86716 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003011 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.977858 B = 9297.277439 C = 9555.953990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.518 3.482 3 O -0.544 6.544 4 N -0.714 5.714 5 C 0.202 3.798 6 H 0.115 0.885 7 C -0.124 4.124 8 C 0.450 3.550 9 O -0.509 6.509 10 O -0.356 6.356 11 C 0.217 3.783 12 H 0.047 0.953 13 C -0.155 4.155 14 C -0.523 4.523 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.169 4.169 23 C 0.145 3.855 24 F -0.126 7.126 25 C -0.168 4.168 26 C -0.061 4.061 27 C -0.166 4.166 28 C 0.151 3.849 29 F -0.122 7.122 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.404 0.596 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.016 0.984 38 H 0.036 0.964 39 H 0.267 0.733 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 5.395 22.916 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.421 6.421 4 N -0.365 5.365 5 C 0.096 3.904 6 H 0.133 0.867 7 C -0.162 4.162 8 C 0.292 3.708 9 O -0.398 6.398 10 O -0.272 6.272 11 C 0.165 3.835 12 H 0.064 0.936 13 C -0.213 4.213 14 C -0.561 4.561 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.739 3.261 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.173 4.173 23 C 0.125 3.875 24 F -0.104 7.104 25 C -0.187 4.187 26 C -0.079 4.079 27 C -0.185 4.185 28 C 0.130 3.870 29 F -0.100 7.100 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.239 0.761 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.081 6.432 22.427 23.331 hybrid contribution -0.405 -1.283 -0.759 1.544 sum -0.325 5.149 21.668 22.274 Atomic orbital electron populations 1.21899 0.91650 1.05343 1.04362 1.20738 0.90581 0.83305 0.74794 1.90704 1.70817 1.31337 1.49260 1.45900 1.05999 1.09490 1.75160 1.19322 0.82001 0.99529 0.89538 0.86702 1.21629 1.04810 0.98220 0.91560 1.22990 0.76707 0.81395 0.89672 1.90656 1.38514 1.38393 1.72233 1.86482 1.72131 1.40883 1.27752 1.20632 0.95233 0.97887 0.69794 0.93559 1.22164 0.98402 0.96173 1.04568 1.20987 1.49203 0.90993 0.94916 0.91366 1.24893 0.94779 0.98245 0.96042 1.69891 1.47309 1.30955 1.04473 0.86325 0.78858 0.83360 0.77535 1.19979 1.21025 1.19916 1.20304 0.99589 1.00066 0.97307 1.17149 0.87898 0.89999 0.92411 1.91508 1.59289 1.66967 1.92648 1.21196 1.00718 1.02393 0.94418 1.20854 0.93801 0.93429 0.99793 1.21223 1.03340 1.03130 0.90850 1.17191 0.92623 0.90857 0.86284 1.91570 1.80640 1.73864 1.63946 0.89578 0.89079 0.89060 0.76075 0.87327 0.86579 0.88232 0.96492 0.94436 0.92305 0.83944 0.83883 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.32 36.01 0.37 -1.44 16 2 C 0.52 7.78 7.86 -10.99 -0.09 7.69 16 3 O -0.54 -10.33 16.77 5.55 0.09 -10.24 16 4 N -0.71 -10.01 3.10 -54.93 -0.17 -10.18 16 5 C 0.20 2.93 1.52 -69.08 -0.11 2.82 16 6 H 0.12 2.03 6.53 -51.93 -0.34 1.69 16 7 C -0.12 -1.78 5.26 -27.88 -0.15 -1.92 16 8 C 0.45 9.06 7.79 36.01 0.28 9.34 16 9 O -0.51 -11.68 14.57 -18.75 -0.27 -11.95 16 10 O -0.36 -8.29 9.86 -39.26 -0.39 -8.68 16 11 C 0.22 5.79 2.56 -27.88 -0.07 5.72 16 12 H 0.05 1.36 7.15 -51.93 -0.37 0.99 16 13 C -0.16 -3.98 9.33 37.16 0.35 -3.63 16 14 C -0.52 -14.58 8.90 -34.44 -0.31 -14.88 16 15 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 18 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.17 -2.07 4.88 -104.49 -0.51 -2.58 16 23 C 0.15 1.50 7.01 -39.42 -0.28 1.22 16 24 F -0.13 -1.32 15.03 2.25 0.03 -1.28 16 25 C -0.17 -1.30 10.03 -39.50 -0.40 -1.70 16 26 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 27 C -0.17 -1.40 10.02 -39.51 -0.40 -1.80 16 28 C 0.15 1.77 7.24 -39.43 -0.29 1.48 16 29 F -0.12 -1.67 16.26 2.25 0.04 -1.63 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.40 4.98 8.09 -40.82 -0.33 4.65 16 34 H 0.11 1.33 7.70 -51.93 -0.40 0.93 16 35 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -34.34 370.50 -6.66 -41.00 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.10 Total: 4.95 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.07 Total: 1.15 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.46 Total: -34.79 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.57 Total: -30.88 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.07 Total: -2.92 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.34 -6.66 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.331 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds