Wall clock time and date at job start Tue Mar 31 2020 23:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47070 * 2 1 4 4 N 1.46499 * 109.47405 * 239.99489 * 2 1 3 5 5 S 1.65598 * 119.99791 * 95.00291 * 4 2 1 6 6 C 1.81393 * 104.45240 * 65.00108 * 5 4 2 7 7 O 1.42101 * 104.27560 * 181.06925 * 5 4 2 8 8 O 1.42096 * 104.27739 * 308.92467 * 5 4 2 9 9 C 1.50706 * 109.46679 * 119.99294 * 2 1 3 10 10 O 1.21287 * 119.99683 * 93.83253 * 9 2 1 11 11 N 1.34769 * 120.00268 * 273.83226 * 9 2 1 12 12 C 1.46505 * 119.99934 * 5.02080 * 11 9 2 13 13 C 1.50699 * 109.46834 * 92.38541 * 12 11 9 14 14 H 1.08004 * 119.99872 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99979 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00184 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47083 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46955 * 120.00348 * 17 15 13 20 20 H 1.48499 * 109.46994 * 240.00610 * 17 15 13 21 21 C 1.46504 * 120.00095 * 185.02599 * 11 9 2 22 22 C 1.50703 * 109.47012 * 89.99845 * 21 11 9 23 23 C 1.38678 * 120.41584 * 269.71987 * 22 21 11 24 24 C 1.38626 * 118.41805 * 179.78745 * 23 22 21 25 25 C 1.38226 * 119.16133 * 0.51203 * 24 23 22 26 26 N 1.31858 * 120.76513 * 359.72681 * 25 24 23 27 27 C 1.31895 * 121.72277 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47498 * 294.56810 * 1 2 3 29 29 H 1.09007 * 109.46895 * 54.57368 * 1 2 3 30 30 H 1.09005 * 109.47099 * 174.56551 * 1 2 3 31 31 H 0.97001 * 120.00084 * 275.00052 * 4 2 1 32 32 H 1.09000 * 109.47352 * 179.97438 * 6 5 4 33 33 H 1.09010 * 109.46964 * 300.00038 * 6 5 4 34 34 H 1.09004 * 109.47186 * 59.99484 * 6 5 4 35 35 H 1.08995 * 109.47096 * 212.38834 * 12 11 9 36 36 H 1.09000 * 109.46903 * 332.38881 * 12 11 9 37 37 H 0.96994 * 119.99721 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46837 * 209.99801 * 21 11 9 39 39 H 1.08994 * 109.46710 * 329.99944 * 21 11 9 40 40 H 1.08001 * 120.78986 * 0.02562 * 23 22 21 41 41 H 1.07999 * 120.41755 * 180.22012 * 24 23 22 42 42 H 1.08000 * 119.62129 * 179.74681 * 25 24 23 43 43 H 1.07991 * 119.61354 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4123 0.1770 -2.5504 6 6 3.8314 1.1871 -2.0440 7 8 2.8125 -0.8078 -3.4934 8 8 1.2753 0.9964 -2.7847 9 6 2.0322 -0.7103 1.2306 10 8 2.3005 -1.8921 1.1816 11 7 2.1833 -0.0324 2.3856 12 6 1.7563 1.3662 2.4752 13 6 0.3370 1.4268 2.9780 14 1 -0.1938 0.5148 3.2082 15 6 -0.2836 2.6466 3.1452 16 7 0.3628 3.7572 2.8654 17 14 -2.0428 2.7218 3.7692 18 1 -2.5422 1.3441 4.0091 19 1 -2.0852 3.4913 5.0385 20 1 -2.8991 3.3898 2.7564 21 6 2.7745 -0.6939 3.5514 22 6 4.2689 -0.4997 3.5350 23 6 5.0894 -1.4187 2.8983 24 6 6.4578 -1.1970 2.9048 25 6 6.9562 -0.0809 3.5502 26 7 6.1462 0.7695 4.1497 27 6 4.8392 0.5930 4.1595 28 1 -0.3634 0.4273 0.9346 29 1 -0.3633 0.5957 -0.8375 30 1 -0.3633 -1.0231 -0.0973 31 1 2.1111 -1.6563 -1.1947 32 1 4.1612 1.7977 -2.8846 33 1 3.5400 1.8342 -1.2166 34 1 4.6460 0.5360 -1.7266 35 1 2.4091 1.9019 3.1643 36 1 1.8124 1.8271 1.4890 37 1 -0.0737 4.6153 2.9834 38 1 2.3619 -0.2612 4.4627 39 1 2.5462 -1.7592 3.5191 40 1 4.6719 -2.2845 2.4059 41 1 7.1263 -1.8901 2.4159 42 1 8.0214 0.0969 3.5634 43 1 4.2075 1.3109 4.6613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114176663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:22 Heat of formation + Delta-G solvation = -68.469580 kcal Electronic energy + Delta-G solvation = -28780.794589 eV Core-core repulsion = 24760.524037 eV Total energy + Delta-G solvation = -4020.270551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25017 -39.36178 -37.04530 -35.91345 -35.66500 -35.07270 -33.14249 -32.25265 -31.47693 -29.59367 -29.41123 -27.65574 -26.36010 -23.64413 -23.51523 -22.93623 -21.72695 -19.46236 -18.97502 -17.82842 -17.05806 -16.73829 -16.45226 -16.31628 -16.17865 -15.78095 -15.42219 -15.24642 -14.66281 -14.52809 -14.12049 -13.63679 -13.37805 -13.34023 -13.17262 -13.00385 -12.89464 -12.68669 -12.46094 -12.07786 -12.07110 -11.96810 -11.79228 -11.75027 -11.41054 -11.28645 -11.17569 -11.05620 -11.02246 -10.84702 -10.28710 -9.95471 -9.75336 -9.58661 -9.34018 -9.19316 -8.83243 -8.66259 -8.01320 -6.32025 -4.39788 0.30815 1.18475 1.40500 2.67853 3.08058 3.15926 3.26212 3.28770 3.59025 3.84267 4.08407 4.23227 4.24716 4.56658 4.71820 4.88596 4.91819 5.00614 5.01119 5.04877 5.12830 5.16541 5.23229 5.49729 5.59107 5.61578 5.68288 5.78344 5.94944 6.06505 6.23543 6.31475 6.41978 6.45399 6.51646 6.82387 6.87390 6.94109 7.16388 7.25492 7.61801 7.86506 8.03375 8.08518 8.57405 8.72858 9.28497 10.74708 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.006592 B = 0.006289 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4246.788494 B = 4451.489578 C = 7522.598082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 H 0.106 0.894 4 N -1.104 6.104 5 S 2.614 3.386 6 C -0.677 4.677 7 O -0.965 6.965 8 O -0.950 6.950 9 C 0.517 3.483 10 O -0.563 6.563 11 N -0.586 5.586 12 C 0.231 3.769 13 C -0.542 4.542 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.160 3.840 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.181 4.181 25 C 0.090 3.910 26 N -0.489 5.489 27 C 0.116 3.884 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.423 0.577 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.150 0.850 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -5.815 -3.021 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.123 0.877 4 N -0.864 5.864 5 S 2.705 3.295 6 C -0.827 4.827 7 O -0.955 6.955 8 O -0.940 6.940 9 C 0.303 3.697 10 O -0.443 6.443 11 N -0.316 5.316 12 C 0.112 3.888 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.206 1.206 21 C 0.036 3.964 22 C -0.150 4.150 23 C -0.085 4.085 24 C -0.201 4.201 25 C -0.067 4.067 26 N -0.197 5.197 27 C -0.041 4.041 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.259 0.741 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.884 -5.300 -3.444 10.903 hybrid contribution -0.657 -0.558 0.456 0.976 sum 8.227 -5.858 -2.987 10.532 Atomic orbital electron populations 1.22349 0.91654 1.02767 1.06185 1.20683 0.97461 0.95606 0.83196 0.87684 1.55527 1.81632 1.20083 1.29204 1.04735 0.76529 0.75039 0.73191 1.30570 1.21995 1.16888 1.13246 1.93597 1.84705 1.57921 1.59281 1.93638 1.45907 1.70706 1.83704 1.20479 0.77240 0.87009 0.84948 1.90571 1.53067 1.15534 1.85176 1.48249 1.58404 1.15392 1.09586 1.19610 0.95823 0.74728 0.98639 1.21423 0.97745 0.92999 1.45863 0.91573 1.24926 0.98354 0.95393 0.94813 1.69908 1.37366 0.97845 1.47141 0.86481 0.84187 0.78435 0.78686 1.19541 1.20832 1.20638 1.20158 0.86626 0.99431 0.90229 1.21433 0.98068 0.96269 0.99224 1.21666 0.93118 0.98637 0.95066 1.22115 0.96143 0.99772 1.02102 1.22717 0.99713 0.90620 0.93622 1.67727 1.05067 1.29313 1.17596 1.22839 0.90859 0.95112 0.95332 0.87592 0.90654 0.92481 0.74098 0.85350 0.85078 0.85383 0.94235 0.94312 0.92314 0.88718 0.89544 0.84505 0.85223 0.83260 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.46 37.16 0.35 -2.58 16 2 C 0.14 2.30 2.34 -69.08 -0.16 2.14 16 3 H 0.11 1.66 5.15 -51.93 -0.27 1.39 16 4 N -1.10 -15.60 5.31 -5.88 -0.03 -15.63 16 5 S 2.61 34.40 6.02 -107.50 -0.65 33.75 16 6 C -0.68 -6.82 10.78 101.05 1.09 -5.74 16 7 O -0.96 -14.90 18.08 -57.54 -1.04 -15.94 16 8 O -0.95 -15.58 17.21 -57.54 -0.99 -16.57 16 9 C 0.52 9.16 6.87 -10.99 -0.08 9.08 16 10 O -0.56 -10.49 15.58 5.55 0.09 -10.40 16 11 N -0.59 -10.46 2.44 -176.43 -0.43 -10.89 16 12 C 0.23 4.73 4.94 -5.19 -0.03 4.70 16 13 C -0.54 -12.35 7.26 -34.44 -0.25 -12.60 16 14 H 0.07 1.54 7.79 -52.48 -0.41 1.13 16 15 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -22.40 13.29 55.43 0.74 -21.66 16 17 Si 0.89 19.14 29.54 -169.99 -5.02 14.11 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.16 2.51 5.61 -5.19 -0.03 2.48 16 22 C -0.15 -2.16 5.48 -104.48 -0.57 -2.74 16 23 C -0.06 -0.79 9.86 -39.28 -0.39 -1.18 16 24 C -0.18 -2.14 10.11 -39.44 -0.40 -2.54 16 25 C 0.09 1.13 11.18 -17.54 -0.20 0.93 16 26 N -0.49 -7.35 10.36 -13.25 -0.14 -7.49 16 27 C 0.12 1.75 10.86 -17.55 -0.19 1.56 16 28 H 0.11 2.02 5.67 -51.93 -0.29 1.73 16 29 H 0.07 1.28 7.53 -51.92 -0.39 0.89 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.42 5.79 8.08 -34.47 -0.28 5.51 16 32 H 0.13 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.13 1.34 7.44 -51.92 -0.39 0.95 16 34 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.04 0.82 5.71 -51.93 -0.30 0.52 16 37 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.45 8.02 -51.93 -0.42 1.03 16 39 H 0.09 1.35 7.31 -51.93 -0.38 0.97 16 40 H 0.14 1.85 7.96 -52.49 -0.42 1.43 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -30.68 375.03 -8.40 -39.08 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.63 Total: 10.90 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.94 Total: -4.90 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.14 Total: -55.67 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.94 Total: -42.91 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 34.40 SS G_CDS: -0.65 Total: 33.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.68 -8.40 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114176663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.391 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds