Wall clock time and date at job start Tue Mar 31 2020 23:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47449 * 2 1 4 4 N 1.46499 * 109.47102 * 239.99665 * 2 1 3 5 5 S 1.65597 * 120.00062 * 95.00576 * 4 2 1 6 6 C 1.81403 * 104.45195 * 64.99494 * 5 4 2 7 7 O 1.42099 * 104.27961 * 181.07246 * 5 4 2 8 8 O 1.42102 * 104.27600 * 308.92589 * 5 4 2 9 9 C 1.50704 * 109.47068 * 120.00007 * 2 1 3 10 10 O 1.21277 * 120.00232 * 114.08184 * 9 2 1 11 11 N 1.34774 * 119.99605 * 294.08559 * 9 2 1 12 12 C 1.46502 * 120.00540 * 355.29171 * 11 9 2 13 13 C 1.50696 * 109.47460 * 263.37310 * 12 11 9 14 14 H 1.08005 * 119.99590 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00446 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99646 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00005 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47370 * 90.00017 * 17 15 13 19 19 H 1.48506 * 109.46908 * 209.99814 * 17 15 13 20 20 H 1.48502 * 109.47185 * 329.99321 * 17 15 13 21 21 C 1.46505 * 119.99900 * 175.29141 * 11 9 2 22 22 C 1.50699 * 109.46834 * 90.00144 * 21 11 9 23 23 C 1.38228 * 119.61784 * 94.98248 * 22 21 11 24 24 C 1.38637 * 119.15596 * 179.78907 * 23 22 21 25 25 C 1.38672 * 118.41934 * 0.47101 * 24 23 22 26 26 C 1.38173 * 119.16700 * 359.50282 * 25 24 23 27 27 N 1.31855 * 119.61816 * 274.99388 * 22 21 11 28 28 H 1.08999 * 109.46967 * 171.69453 * 1 2 3 29 29 H 1.09000 * 109.47044 * 291.70337 * 1 2 3 30 30 H 1.08997 * 109.46803 * 51.69921 * 1 2 3 31 31 H 0.97003 * 119.99996 * 275.00212 * 4 2 1 32 32 H 1.09006 * 109.46726 * 60.00207 * 6 5 4 33 33 H 1.08996 * 109.47184 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47137 * 300.00736 * 6 5 4 35 35 H 1.09008 * 109.46549 * 23.36949 * 12 11 9 36 36 H 1.08994 * 109.47315 * 143.36624 * 12 11 9 37 37 H 0.97001 * 119.99787 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.47332 * 329.99840 * 21 11 9 39 39 H 1.09002 * 109.47152 * 209.99689 * 21 11 9 40 40 H 1.07994 * 120.42000 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.78361 * 180.22613 * 24 23 22 42 42 H 1.08006 * 120.41119 * 179.78232 * 25 24 23 43 43 H 1.07993 * 119.61849 * 180.25230 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4123 0.1770 -2.5504 6 6 3.8314 1.1871 -2.0440 7 8 2.8123 -0.8077 -3.4935 8 8 1.2752 0.9965 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.6385 -1.7553 1.1225 11 7 1.8078 -0.1846 2.4510 12 6 1.1672 1.1269 2.5771 13 6 2.2237 2.1877 2.7487 14 1 3.2680 1.9124 2.7628 15 6 1.8573 3.5095 2.8876 16 7 0.5857 3.8447 2.8699 17 14 3.1670 4.8243 3.1010 18 1 3.5764 5.3360 1.7684 19 1 2.6199 5.9407 3.9132 20 1 4.3457 4.2415 3.7911 21 6 2.2044 -0.9246 3.6516 22 6 3.6153 -0.5520 4.0280 23 6 3.8329 0.4402 4.9655 24 6 5.1347 0.7721 5.3079 25 6 6.1735 0.0976 4.6844 26 6 5.8789 -0.8834 3.7570 27 7 4.6279 -1.1762 3.4591 28 1 -0.3633 -1.0169 -0.1484 29 1 -0.3633 0.3800 0.9548 30 1 -0.3633 0.6369 -0.8065 31 1 2.1109 -1.6563 -1.1948 32 1 4.6460 0.5360 -1.7266 33 1 4.1612 1.7977 -2.8845 34 1 3.5401 1.8341 -1.2166 35 1 0.5858 1.3351 1.6788 36 1 0.5077 1.1271 3.4449 37 1 0.3279 4.7747 2.9680 38 1 2.1520 -1.9949 3.4526 39 1 1.5314 -0.6740 4.4717 40 1 2.9994 0.9482 5.4275 41 1 5.3348 1.5407 6.0398 42 1 7.2000 0.3328 4.9242 43 1 6.6822 -1.4161 3.2701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114182891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:16 Heat of formation + Delta-G solvation = -58.715918 kcal Electronic energy + Delta-G solvation = -29083.426994 eV Core-core repulsion = 25063.579394 eV Total energy + Delta-G solvation = -4019.847601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03966 -39.16499 -36.96040 -35.83022 -35.45983 -35.00864 -32.85298 -32.04050 -31.46635 -29.57654 -29.32253 -27.67386 -26.25097 -23.87183 -23.11535 -22.64497 -21.59280 -19.36943 -18.99800 -17.72260 -16.92506 -16.53398 -16.30446 -16.09886 -15.91535 -15.62601 -15.25782 -15.16507 -14.62550 -14.47666 -14.10160 -13.43281 -13.25344 -13.19755 -13.03893 -12.95718 -12.76733 -12.61250 -12.26568 -12.07023 -11.97050 -11.91179 -11.82443 -11.54164 -11.37718 -11.25182 -11.22174 -10.99969 -10.94835 -10.71791 -10.28986 -9.85875 -9.55070 -9.45841 -9.03632 -8.99052 -8.70950 -8.49725 -7.86893 -6.29862 -4.36514 0.41593 1.46658 1.70796 2.79194 3.11313 3.19341 3.20766 3.26043 3.70636 3.94082 4.20822 4.34459 4.37968 4.70074 4.83798 4.98116 5.04940 5.10374 5.14997 5.15949 5.38937 5.41145 5.49130 5.52838 5.60214 5.81926 5.82459 5.89694 6.11501 6.13926 6.16778 6.31597 6.48432 6.52238 6.57765 6.64327 7.04881 7.09024 7.23354 7.37523 7.64656 7.92655 8.17465 8.46089 8.66534 8.85862 9.31326 10.76668 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009568 B = 0.005140 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.817263 B = 5446.660035 C = 6628.363244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 H 0.114 0.886 4 N -1.099 6.099 5 S 2.616 3.384 6 C -0.676 4.676 7 O -0.966 6.966 8 O -0.953 6.953 9 C 0.512 3.488 10 O -0.541 6.541 11 N -0.588 5.588 12 C 0.218 3.782 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.174 3.826 22 C 0.122 3.878 23 C -0.128 4.128 24 C -0.086 4.086 25 C -0.181 4.181 26 C 0.085 3.915 27 N -0.459 5.459 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.423 0.577 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -4.726 0.251 6.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.027 3.973 3 H 0.131 0.869 4 N -0.859 5.859 5 S 2.707 3.293 6 C -0.826 4.826 7 O -0.956 6.956 8 O -0.943 6.943 9 C 0.297 3.703 10 O -0.419 6.419 11 N -0.320 5.320 12 C 0.098 3.902 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.049 3.951 22 C -0.017 4.017 23 C -0.149 4.149 24 C -0.112 4.112 25 C -0.201 4.201 26 C -0.073 4.073 27 N -0.168 5.168 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.347 -5.603 -1.237 7.198 hybrid contribution 1.701 1.797 1.413 2.850 sum 6.048 -3.806 0.176 7.148 Atomic orbital electron populations 1.22430 0.92606 1.02985 1.04930 1.20605 0.96363 0.96587 0.83733 0.86861 1.55399 1.81611 1.20038 1.28901 1.04644 0.76513 0.74969 0.73135 1.30551 1.21969 1.16902 1.13208 1.93592 1.84707 1.57947 1.59384 1.93625 1.46168 1.70710 1.83814 1.20423 0.79551 0.85428 0.84849 1.90648 1.40985 1.23973 1.86256 1.48119 1.58914 1.21264 1.03662 1.19902 0.93549 0.77057 0.99655 1.21459 0.93486 0.91263 1.51437 0.92066 1.24883 0.95276 0.98417 0.94907 1.69895 1.15001 1.18515 1.48935 0.86657 0.81916 0.81497 0.78457 1.20533 1.20978 1.19795 1.20099 0.89232 0.97393 0.88354 1.21624 0.95685 0.92491 0.91884 1.22012 0.97751 0.96882 0.98226 1.21506 0.92886 0.98149 0.98655 1.22031 0.99828 0.98758 0.99467 1.22626 0.93949 0.95469 0.95233 1.67573 0.99276 1.26820 1.23160 0.92118 0.89219 0.90240 0.74090 0.85245 0.85558 0.84815 0.92361 0.94411 0.92385 0.89408 0.89266 0.84445 0.85525 0.85730 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.01 37.16 0.33 -2.34 16 2 C 0.14 2.31 2.25 -69.08 -0.16 2.15 16 3 H 0.11 1.93 6.72 -51.93 -0.35 1.58 16 4 N -1.10 -16.41 5.19 -5.88 -0.03 -16.44 16 5 S 2.62 36.82 6.02 -107.50 -0.65 36.17 16 6 C -0.68 -7.99 10.78 101.05 1.09 -6.90 16 7 O -0.97 -15.77 18.08 -57.54 -1.04 -16.81 16 8 O -0.95 -16.03 17.29 -57.54 -0.99 -17.03 16 9 C 0.51 9.62 7.04 -10.98 -0.08 9.54 16 10 O -0.54 -11.06 15.59 5.56 0.09 -10.97 16 11 N -0.59 -11.02 2.46 -176.43 -0.43 -11.46 16 12 C 0.22 4.49 4.51 -5.19 -0.02 4.47 16 13 C -0.54 -12.40 8.51 -34.44 -0.29 -12.69 16 14 H 0.06 1.48 6.80 -52.48 -0.36 1.13 16 15 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -22.36 13.29 55.43 0.74 -21.62 16 17 Si 0.89 19.24 29.54 -169.99 -5.02 14.22 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.17 2.98 5.71 -5.19 -0.03 2.95 16 22 C 0.12 2.18 5.76 -82.59 -0.48 1.70 16 23 C -0.13 -2.13 8.47 -39.44 -0.33 -2.46 16 24 C -0.09 -1.28 10.18 -39.27 -0.40 -1.68 16 25 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 26 C 0.08 1.31 11.18 -17.55 -0.20 1.12 16 27 N -0.46 -8.42 10.27 -9.48 -0.10 -8.52 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.45 5.42 -51.93 -0.28 1.17 16 30 H 0.08 1.25 7.61 -51.93 -0.40 0.85 16 31 H 0.42 6.13 8.11 -34.47 -0.28 5.86 16 32 H 0.13 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.13 1.66 7.44 -51.92 -0.39 1.28 16 35 H 0.06 1.22 4.10 -51.92 -0.21 1.00 16 36 H 0.04 0.81 7.99 -51.93 -0.41 0.40 16 37 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.51 7.49 -51.93 -0.39 1.12 16 39 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 40 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -31.86 372.49 -8.45 -40.31 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.57 Total: 12.02 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.06 Total: -5.49 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.17 Total: -58.04 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.95 Total: -44.80 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.65 Total: 36.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.86 -8.45 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114182891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.403 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds