Wall clock time and date at job start Tue Mar 31 2020 23:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.46587 * 2 1 4 4 N 1.46496 * 109.47199 * 119.99128 * 2 1 3 5 5 S 1.65597 * 120.00568 * 265.00701 * 4 2 1 6 6 C 1.81401 * 104.45002 * 64.99732 * 5 4 2 7 7 O 1.42095 * 104.27674 * 181.07253 * 5 4 2 8 8 O 1.42106 * 104.27462 * 308.92533 * 5 4 2 9 9 C 1.50697 * 109.47285 * 240.00007 * 2 1 3 10 10 O 1.21286 * 119.99812 * 266.61332 * 9 2 1 11 11 N 1.34777 * 120.00209 * 86.61550 * 9 2 1 12 12 C 1.46499 * 119.99869 * 5.14473 * 11 9 2 13 13 C 1.50705 * 109.47021 * 266.82339 * 12 11 9 14 14 H 1.07998 * 119.99518 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99836 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00514 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47389 * 89.99389 * 17 15 13 19 19 H 1.48494 * 109.47293 * 209.99950 * 17 15 13 20 20 H 1.48508 * 109.46666 * 329.99759 * 17 15 13 21 21 C 1.46502 * 120.00060 * 185.14026 * 11 9 2 22 22 C 1.50703 * 109.47199 * 270.00546 * 21 11 9 23 23 C 1.38223 * 119.62043 * 94.97615 * 22 21 11 24 24 C 1.38632 * 119.15876 * 179.78949 * 23 22 21 25 25 C 1.38670 * 118.42103 * 0.47707 * 24 23 22 26 26 C 1.38186 * 119.16101 * 359.50125 * 25 24 23 27 27 N 1.31854 * 119.61343 * 274.99749 * 22 21 11 28 28 H 1.09001 * 109.46425 * 181.24305 * 1 2 3 29 29 H 1.08997 * 109.47024 * 301.24207 * 1 2 3 30 30 H 1.08999 * 109.46995 * 61.24326 * 1 2 3 31 31 H 0.97009 * 119.99313 * 85.00750 * 4 2 1 32 32 H 1.08998 * 109.47069 * 60.00407 * 6 5 4 33 33 H 1.09000 * 109.46979 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47145 * 300.00278 * 6 5 4 35 35 H 1.09002 * 109.47093 * 26.82262 * 12 11 9 36 36 H 1.09001 * 109.47311 * 146.82430 * 12 11 9 37 37 H 0.96997 * 120.00508 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.46793 * 150.00064 * 21 11 9 39 39 H 1.09006 * 109.46781 * 29.99944 * 21 11 9 40 40 H 1.07993 * 120.42157 * 359.97438 * 23 22 21 41 41 H 1.08001 * 120.78714 * 180.23201 * 24 23 22 42 42 H 1.08003 * 120.41814 * 179.78150 * 25 24 23 43 43 H 1.08001 * 119.61055 * 180.25606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6904 1.1962 5 16 2.4121 0.1774 2.5505 6 6 0.8406 0.8991 3.0984 7 8 2.8606 -0.8026 3.4766 8 8 3.2874 1.1909 2.0751 9 6 2.0324 -0.7104 -1.2304 10 8 2.2931 -1.8940 -1.1834 11 7 2.1921 -0.0305 -2.3831 12 6 1.9860 1.4196 -2.4128 13 6 0.5624 1.7166 -2.8082 14 1 -0.1205 0.9062 -3.0161 15 6 0.1320 3.0229 -2.9045 16 7 0.9635 4.0097 -2.6508 17 14 -1.6328 3.3911 -3.3939 18 1 -2.4795 3.4630 -2.1761 19 1 -1.6867 4.6899 -4.1117 20 1 -2.1350 2.3129 -4.2831 21 6 2.5719 -0.7416 -3.6064 22 6 4.0743 -0.7841 -3.7169 23 6 4.7625 -1.8888 -3.2515 24 6 6.1441 -1.9197 -3.3619 25 6 6.7854 -0.8292 -3.9298 26 6 6.0306 0.2400 -4.3731 27 7 4.7170 0.2331 -4.2561 28 1 -0.3632 -1.0275 0.0223 29 1 -0.3633 0.5330 0.8786 30 1 -0.3633 0.4944 -0.9009 31 1 2.1111 -1.6561 1.1949 32 1 0.1315 0.1012 3.3184 33 1 1.0076 1.4941 3.9963 34 1 0.4385 1.5354 2.3100 35 1 2.1828 1.8349 -1.4244 36 1 2.6655 1.8684 -3.1374 37 1 0.6606 4.9287 -2.7182 38 1 2.1584 -0.2230 -4.4713 39 1 2.1813 -1.7587 -3.5715 40 1 4.2306 -2.7186 -2.8102 41 1 6.7078 -2.7712 -3.0104 42 1 7.8608 -0.8177 -4.0285 43 1 6.5222 1.0913 -4.8203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114182894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:19 Heat of formation + Delta-G solvation = -64.496752 kcal Electronic energy + Delta-G solvation = -28710.187417 eV Core-core repulsion = 24690.089140 eV Total energy + Delta-G solvation = -4020.098277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12228 -39.22782 -36.99629 -35.85092 -35.49757 -35.02092 -32.84934 -32.17103 -31.48483 -29.78268 -29.25889 -27.59303 -26.41547 -23.61123 -23.29404 -22.86961 -21.64383 -19.40937 -18.91302 -17.76895 -16.91059 -16.51009 -16.35989 -16.21600 -16.08652 -15.53592 -15.39330 -15.25029 -14.60141 -14.49345 -14.15653 -13.61187 -13.47383 -13.19292 -13.14463 -12.95013 -12.86162 -12.49679 -12.34278 -12.01092 -11.94059 -11.89713 -11.70553 -11.61797 -11.43284 -11.37537 -11.19223 -10.96849 -10.94751 -10.73379 -10.20843 -9.85980 -9.64256 -9.56244 -9.18233 -9.09557 -8.73087 -8.55342 -7.87386 -6.20503 -4.28711 0.34570 1.31893 1.53820 2.74830 3.17409 3.18706 3.27767 3.30046 3.68562 3.88129 4.21304 4.27495 4.32971 4.60871 4.75393 4.97116 4.99661 5.05217 5.06421 5.11646 5.28006 5.39605 5.43520 5.47594 5.58417 5.65185 5.79772 5.82872 6.01220 6.03639 6.18744 6.29644 6.37492 6.41130 6.67272 6.69111 6.94081 7.15684 7.25047 7.44412 7.72310 7.99897 8.18646 8.33579 8.68577 8.83757 9.37770 10.86089 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.006857 B = 0.006029 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4082.335783 B = 4643.291718 C = 7594.135905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.130 3.870 3 H 0.122 0.878 4 N -1.104 6.104 5 S 2.612 3.388 6 C -0.676 4.676 7 O -0.966 6.966 8 O -0.952 6.952 9 C 0.521 3.479 10 O -0.566 6.566 11 N -0.580 5.580 12 C 0.230 3.770 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.169 3.831 22 C 0.118 3.882 23 C -0.150 4.150 24 C -0.084 4.084 25 C -0.180 4.180 26 C 0.095 3.905 27 N -0.463 5.463 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.422 0.578 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.266 0.734 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -7.691 4.112 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.139 0.861 4 N -0.865 5.865 5 S 2.704 3.296 6 C -0.826 4.826 7 O -0.956 6.956 8 O -0.942 6.942 9 C 0.307 3.693 10 O -0.446 6.446 11 N -0.310 5.310 12 C 0.111 3.889 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.045 3.955 22 C -0.021 4.021 23 C -0.171 4.171 24 C -0.110 4.110 25 C -0.200 4.200 26 C -0.063 4.063 27 N -0.172 5.172 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.258 0.742 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.207 -7.058 4.202 8.818 hybrid contribution -1.043 -0.495 -0.016 1.155 sum 2.164 -7.553 4.186 8.902 Atomic orbital electron populations 1.22418 0.92580 1.02933 1.05256 1.20800 0.96022 0.97528 0.83662 0.86078 1.55445 1.84061 1.20503 1.26466 1.04719 0.76810 0.74626 0.73456 1.30654 1.24571 1.14275 1.13073 1.93593 1.79762 1.59062 1.63170 1.93649 1.60794 1.60688 1.79099 1.20296 0.77320 0.86910 0.84765 1.90559 1.53126 1.15989 1.84954 1.48177 1.64738 1.11230 1.06820 1.19667 0.97568 0.72588 0.99113 1.21416 0.95892 0.92236 1.48334 0.91739 1.24932 0.97681 0.96079 0.94932 1.69934 1.34966 0.99510 1.47681 0.86578 0.84573 0.77991 0.78802 1.20522 1.21099 1.19750 1.20169 0.87333 0.98683 0.89312 1.21840 0.97724 0.89262 0.93306 1.22121 0.94764 1.00246 0.99943 1.21548 0.94636 0.98176 0.96657 1.22095 1.01067 0.95511 1.01366 1.22759 0.89705 0.97421 0.96389 1.67583 1.09950 1.26375 1.13326 0.92043 0.92062 0.87533 0.74184 0.85210 0.85497 0.84617 0.94277 0.93110 0.92412 0.88196 0.89337 0.84404 0.85305 0.85296 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.46 37.16 0.35 -2.22 16 2 C 0.13 2.20 2.62 -69.08 -0.18 2.02 16 3 H 0.12 2.23 5.22 -51.92 -0.27 1.96 16 4 N -1.10 -16.20 5.31 -5.88 -0.03 -16.23 16 5 S 2.61 35.98 6.08 -107.50 -0.65 35.32 16 6 C -0.68 -6.47 10.07 101.05 1.02 -5.45 16 7 O -0.97 -15.37 18.08 -57.54 -1.04 -16.41 16 8 O -0.95 -17.15 17.39 -57.54 -1.00 -18.15 16 9 C 0.52 10.05 6.86 -10.99 -0.08 9.97 16 10 O -0.57 -11.18 15.52 5.55 0.09 -11.10 16 11 N -0.58 -11.64 2.44 -176.43 -0.43 -12.07 16 12 C 0.23 5.27 4.98 -5.19 -0.03 5.24 16 13 C -0.54 -12.85 7.64 -34.44 -0.26 -13.12 16 14 H 0.06 1.51 7.48 -52.49 -0.39 1.12 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.88 -23.44 13.29 55.43 0.74 -22.71 16 17 Si 0.89 19.28 29.54 -169.99 -5.02 14.26 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 C 0.17 3.08 5.69 -5.19 -0.03 3.05 16 22 C 0.12 2.09 6.36 -82.59 -0.53 1.56 16 23 C -0.15 -2.37 9.72 -39.44 -0.38 -2.75 16 24 C -0.08 -1.13 10.18 -39.28 -0.40 -1.53 16 25 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 26 C 0.09 1.41 11.18 -17.55 -0.20 1.22 16 27 N -0.46 -8.44 10.27 -9.47 -0.10 -8.54 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.73 5.80 -51.93 -0.30 0.43 16 30 H 0.11 1.83 5.88 -51.93 -0.31 1.53 16 31 H 0.42 5.95 8.09 -34.47 -0.28 5.67 16 32 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.14 1.30 6.75 -51.92 -0.35 0.95 16 35 H 0.04 0.94 5.78 -51.93 -0.30 0.64 16 36 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 39 H 0.09 1.48 7.40 -51.93 -0.38 1.10 16 40 H 0.14 2.11 7.81 -52.49 -0.41 1.70 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -32.92 372.86 -8.55 -41.47 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.51 Total: 11.67 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.21 Total: -3.13 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.18 Total: -59.55 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.95 Total: -45.66 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.65 Total: 35.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.92 -8.55 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114182894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.028 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds