Wall clock time and date at job start Tue Mar 31 2020 23:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00021 * 2 1 4 4 O 1.20829 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00015 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47016 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.47193 * 179.97438 * 6 5 3 8 8 C 1.33407 * 122.71082 * 124.99638 * 7 6 5 9 9 S 1.76177 * 108.06428 * 179.76160 * 8 7 6 10 10 C 1.70972 * 90.34198 * 0.28736 * 9 8 7 11 11 N 1.39009 * 124.93997 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00300 * 359.69372 * 11 10 9 13 13 O 1.21583 * 119.99665 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99848 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00110 * 0.02562 * 14 12 11 16 16 C 1.46497 * 119.99744 * 179.97438 * 14 12 11 17 17 H 1.08995 * 109.47498 * 0.02562 * 16 14 12 18 18 C 1.52999 * 109.47400 * 239.99991 * 16 14 12 19 19 C 1.50703 * 109.46673 * 120.00587 * 16 14 12 20 20 H 1.07997 * 120.00693 * 35.01586 * 19 16 14 21 21 C 1.37878 * 119.99760 * 215.01570 * 19 16 14 22 22 N 1.31515 * 120.00367 * 184.89790 * 21 19 16 23 23 Si 1.86802 * 120.00243 * 4.90033 * 21 19 16 24 24 H 1.48496 * 109.47292 * 84.79622 * 23 21 19 25 25 H 1.48494 * 109.47356 * 204.80068 * 23 21 19 26 26 H 1.48500 * 109.46883 * 324.79855 * 23 21 19 27 27 N 1.29614 * 110.11068 * 359.70962 * 10 9 8 28 28 H 1.09005 * 109.46977 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.46844 * 60.00280 * 1 2 3 30 30 H 1.08991 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47208 * 59.99980 * 5 3 2 32 32 H 1.08999 * 109.47124 * 299.99817 * 5 3 2 33 33 H 1.09010 * 109.47086 * 60.00036 * 6 5 3 34 34 H 1.08999 * 109.47262 * 300.00023 * 6 5 3 35 35 H 1.07995 * 125.97414 * 359.95273 * 8 7 6 36 36 H 0.96998 * 119.99099 * 179.69501 * 11 10 9 37 37 H 1.08990 * 109.47250 * 269.99685 * 15 14 12 38 38 H 1.09005 * 109.47370 * 30.00073 * 15 14 12 39 39 H 1.09000 * 109.47129 * 149.99436 * 15 14 12 40 40 H 1.09001 * 109.46697 * 54.84359 * 18 16 14 41 41 H 1.08998 * 109.47282 * 294.84618 * 18 16 14 42 42 H 1.08997 * 109.47264 * 174.84355 * 18 16 14 43 43 H 0.96998 * 120.00662 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5051 2.8211 -0.0011 8 6 6.1914 3.5014 -0.9208 9 16 7.9066 3.3413 -0.5517 10 6 7.5348 2.3657 0.8021 11 7 8.4726 1.8113 1.6656 12 6 9.7873 2.0247 1.4597 13 8 10.1531 2.7018 0.5184 14 7 10.6964 1.4876 2.2972 15 6 10.2556 0.6714 3.4311 16 6 12.1255 1.7192 2.0731 17 1 12.2583 2.3436 1.1896 18 6 12.8324 0.3789 1.8617 19 6 12.7158 2.4147 3.2726 20 1 12.3527 2.1844 4.2633 21 6 13.7195 3.3450 3.1053 22 7 14.3012 3.8811 4.1560 23 14 14.2532 3.8444 1.3862 24 1 13.3613 4.9201 0.8839 25 1 15.6524 4.3400 1.4267 26 1 14.1702 2.6698 0.4814 27 7 6.2510 2.2228 0.9094 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2365 0.8890 34 1 3.6101 3.2360 -0.8910 35 1 5.7692 4.0561 -1.7456 36 1 8.1806 1.2709 2.4163 37 1 10.1014 1.3103 4.3005 38 1 9.3208 0.1714 3.1772 39 1 11.0165 -0.0751 3.6590 40 1 12.3457 -0.1648 1.0520 41 1 12.7782 -0.2090 2.7780 42 1 13.8767 0.5554 1.6046 43 1 15.0071 4.5359 4.0384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129656372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:28 Heat of formation + Delta-G solvation = -58.932253 kcal Electronic energy + Delta-G solvation = -26706.745261 eV Core-core repulsion = 22686.888279 eV Total energy + Delta-G solvation = -4019.856982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79782 -40.42980 -39.45457 -36.90254 -36.06880 -34.98272 -33.39444 -32.61172 -30.51779 -29.43159 -28.07441 -26.57892 -25.50639 -25.35340 -23.98186 -21.72216 -21.05463 -20.51955 -19.03565 -18.01818 -17.76120 -17.57544 -17.01951 -16.85125 -16.74727 -16.34578 -15.76526 -15.35760 -14.75831 -14.41152 -14.26808 -14.09000 -13.62612 -13.42100 -13.19456 -13.02319 -12.85157 -12.64973 -12.54947 -12.46278 -12.13484 -11.99963 -11.66674 -11.57911 -11.23191 -11.13891 -11.09284 -10.80805 -10.75715 -10.64455 -10.51779 -9.88879 -9.73722 -9.58872 -9.36563 -9.01515 -8.70311 -8.27236 -7.77704 -6.26271 -4.29834 0.95804 1.35159 1.91922 2.05779 2.38898 2.60079 2.78709 3.26089 3.32722 3.39213 3.48986 4.05323 4.30155 4.35774 4.60491 4.73459 4.75153 4.80627 4.87487 5.11945 5.13426 5.24977 5.35391 5.38419 5.49235 5.73099 5.76257 5.81115 5.96661 6.00368 6.08820 6.16481 6.26625 6.38797 6.41365 6.59229 6.77806 7.08683 7.28780 7.43870 7.47351 7.80317 8.07183 8.33257 8.67025 8.75800 9.34803 10.85184 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.002266 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.384363 B =12351.207351 C =12995.313234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.510 6.510 5 C -0.106 4.106 6 C -0.027 4.027 7 C 0.090 3.910 8 C -0.333 4.333 9 S 0.255 5.745 10 C 0.279 3.721 11 N -0.640 5.640 12 C 0.694 3.306 13 O -0.567 6.567 14 N -0.587 5.587 15 C 0.080 3.920 16 C 0.236 3.764 17 H 0.068 0.932 18 C -0.148 4.148 19 C -0.528 4.528 20 H 0.079 0.921 21 C 0.081 3.919 22 N -0.887 5.887 23 Si 0.874 3.126 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.263 1.263 27 N -0.529 5.529 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.416 0.584 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.002 -8.110 -8.388 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.398 6.398 5 C -0.144 4.144 6 C -0.067 4.067 7 C -0.043 4.043 8 C -0.474 4.474 9 S 0.505 5.495 10 C -0.089 4.089 11 N -0.294 5.294 12 C 0.395 3.605 13 O -0.445 6.445 14 N -0.320 5.320 15 C -0.063 4.063 16 C 0.136 3.864 17 H 0.086 0.914 18 C -0.207 4.207 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.701 3.299 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.187 1.187 27 N -0.254 5.254 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.188 0.812 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.874 -7.202 -8.897 22.935 hybrid contribution -0.992 -0.013 -0.094 0.996 sum -20.866 -7.215 -8.991 23.839 Atomic orbital electron populations 1.23263 0.76397 1.03677 1.02557 1.86527 1.23436 1.33683 1.84129 1.23962 0.92352 0.81209 0.71912 1.90674 1.67371 1.36320 1.45399 1.21346 0.86492 0.99785 1.06758 1.19912 0.87759 0.94471 1.04518 1.19436 0.96055 0.97383 0.91447 1.27259 1.00052 1.12238 1.07808 1.85265 1.00359 1.44028 1.19837 1.23154 0.89828 0.99128 0.96809 1.42237 1.03803 1.53296 1.30091 1.15978 0.79356 0.81291 0.83875 1.90798 1.77231 1.43957 1.32501 1.47807 1.07300 1.50647 1.26275 1.21648 0.99327 0.95566 0.89798 1.19394 0.73741 0.94259 0.99034 0.91396 1.22234 1.00537 0.98425 0.99478 1.21089 1.19393 1.22949 0.93165 0.90302 1.24972 0.95605 0.94856 0.96962 1.69877 1.24652 1.28247 1.29521 0.86895 0.77901 0.80184 0.84934 1.19433 1.21280 1.18718 1.66066 1.01486 1.28278 1.29529 0.91869 0.91910 0.88124 0.87594 0.86599 0.89443 0.89417 0.81190 0.74390 0.92150 0.93142 0.89972 0.95289 0.92950 0.92180 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.30 10.57 -39.26 -0.41 -3.71 16 3 C 0.46 4.64 7.96 36.01 0.29 4.92 16 4 O -0.51 -6.33 15.73 -18.75 -0.29 -6.63 16 5 C -0.11 -0.94 5.71 -27.88 -0.16 -1.10 16 6 C -0.03 -0.27 5.00 -27.88 -0.14 -0.41 16 7 C 0.09 1.12 6.07 -84.20 -0.51 0.61 16 8 C -0.33 -4.07 11.05 29.04 0.32 -3.75 16 9 S 0.25 3.87 20.21 -107.50 -2.17 1.70 16 10 C 0.28 4.39 8.19 -87.35 -0.72 3.68 16 11 N -0.64 -10.05 5.27 -17.48 -0.09 -10.15 16 12 C 0.69 13.33 8.24 -86.92 -0.72 12.61 16 13 O -0.57 -12.45 13.13 5.29 0.07 -12.38 16 14 N -0.59 -11.27 2.75 -181.02 -0.50 -11.76 16 15 C 0.08 1.18 9.30 59.85 0.56 1.73 16 16 C 0.24 5.29 2.30 -69.08 -0.16 5.13 16 17 H 0.07 1.67 4.05 -51.93 -0.21 1.46 16 18 C -0.15 -2.87 9.04 37.16 0.34 -2.53 16 19 C -0.53 -13.74 8.82 -34.44 -0.30 -14.04 16 20 H 0.08 2.18 7.67 -52.49 -0.40 1.78 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 23 Si 0.87 21.21 26.99 -169.99 -4.59 16.62 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.26 -6.09 6.82 56.52 0.39 -5.70 16 27 N -0.53 -7.60 10.39 -11.27 -0.12 -7.71 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 1.03 8.08 -51.93 -0.42 0.62 16 33 H 0.09 0.93 8.10 -51.92 -0.42 0.51 16 34 H 0.09 0.79 7.98 -51.93 -0.41 0.37 16 35 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.42 5.40 6.55 -40.82 -0.27 5.13 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.56 6.36 -51.93 -0.33 0.23 16 39 H 0.08 1.17 6.53 -51.93 -0.34 0.83 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.94 6.88 -51.93 -0.36 0.58 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -32.60 373.30 -7.64 -40.24 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.69 Total: 2.87 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -0.24 Total: 10.27 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.07 Total: -54.60 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.64 Total: -22.72 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.17 Total: 1.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.60 -7.64 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129656372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.691 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds