Wall clock time and date at job start Tue Mar 31 2020 23:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00021 * 2 1 4 4 O 1.20829 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00015 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47016 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.47193 * 179.97438 * 6 5 3 8 8 C 1.33407 * 122.71082 * 124.99638 * 7 6 5 9 9 S 1.76177 * 108.06428 * 179.76160 * 8 7 6 10 10 C 1.70972 * 90.34198 * 0.28736 * 9 8 7 11 11 N 1.39009 * 124.93997 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00300 * 359.69372 * 11 10 9 13 13 O 1.21583 * 119.99665 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99848 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00110 * 0.02562 * 14 12 11 16 16 C 1.46497 * 119.99744 * 179.97438 * 14 12 11 17 17 H 1.08995 * 109.47498 * 0.02562 * 16 14 12 18 18 C 1.52999 * 109.47400 * 239.99991 * 16 14 12 19 19 C 1.50703 * 109.46673 * 120.00587 * 16 14 12 20 20 H 1.07997 * 120.00693 * 35.01586 * 19 16 14 21 21 C 1.37878 * 119.99760 * 215.01570 * 19 16 14 22 22 N 1.31515 * 120.00367 * 184.89790 * 21 19 16 23 23 Si 1.86802 * 120.00243 * 4.90033 * 21 19 16 24 24 H 1.48496 * 109.47292 * 84.79622 * 23 21 19 25 25 H 1.48494 * 109.47356 * 204.80068 * 23 21 19 26 26 H 1.48500 * 109.46883 * 324.79855 * 23 21 19 27 27 N 1.29614 * 110.11068 * 359.70962 * 10 9 8 28 28 H 1.09005 * 109.46977 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.46844 * 60.00280 * 1 2 3 30 30 H 1.08991 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47208 * 59.99980 * 5 3 2 32 32 H 1.08999 * 109.47124 * 299.99817 * 5 3 2 33 33 H 1.09010 * 109.47086 * 60.00036 * 6 5 3 34 34 H 1.08999 * 109.47262 * 300.00023 * 6 5 3 35 35 H 1.07995 * 125.97414 * 359.95273 * 8 7 6 36 36 H 0.96998 * 119.99099 * 179.69501 * 11 10 9 37 37 H 1.08990 * 109.47250 * 269.99685 * 15 14 12 38 38 H 1.09005 * 109.47370 * 30.00073 * 15 14 12 39 39 H 1.09000 * 109.47129 * 149.99436 * 15 14 12 40 40 H 1.09001 * 109.46697 * 54.84359 * 18 16 14 41 41 H 1.08998 * 109.47282 * 294.84618 * 18 16 14 42 42 H 1.08997 * 109.47264 * 174.84355 * 18 16 14 43 43 H 0.96998 * 120.00662 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5051 2.8211 -0.0011 8 6 6.1914 3.5014 -0.9208 9 16 7.9066 3.3413 -0.5517 10 6 7.5348 2.3657 0.8021 11 7 8.4726 1.8113 1.6656 12 6 9.7873 2.0247 1.4597 13 8 10.1531 2.7018 0.5184 14 7 10.6964 1.4876 2.2972 15 6 10.2556 0.6714 3.4311 16 6 12.1255 1.7192 2.0731 17 1 12.2583 2.3436 1.1896 18 6 12.8324 0.3789 1.8617 19 6 12.7158 2.4147 3.2726 20 1 12.3527 2.1844 4.2633 21 6 13.7195 3.3450 3.1053 22 7 14.3012 3.8811 4.1560 23 14 14.2532 3.8444 1.3862 24 1 13.3613 4.9201 0.8839 25 1 15.6524 4.3400 1.4267 26 1 14.1702 2.6698 0.4814 27 7 6.2510 2.2228 0.9094 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2365 0.8890 34 1 3.6101 3.2360 -0.8910 35 1 5.7692 4.0561 -1.7456 36 1 8.1806 1.2709 2.4163 37 1 10.1014 1.3103 4.3005 38 1 9.3208 0.1714 3.1772 39 1 11.0165 -0.0751 3.6590 40 1 12.3457 -0.1648 1.0520 41 1 12.7782 -0.2090 2.7780 42 1 13.8767 0.5554 1.6046 43 1 15.0071 4.5359 4.0384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129656372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:27 Heat of formation + Delta-G solvation = -79.426815 kcal Electronic energy + Delta-G solvation = -26707.633971 eV Core-core repulsion = 22686.888279 eV Total energy + Delta-G solvation = -4020.745693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83939 -41.51521 -40.60175 -37.71515 -37.54379 -36.30274 -34.77543 -34.09879 -32.09549 -30.48214 -28.72270 -27.89238 -27.25504 -26.38601 -25.12454 -23.13418 -21.96279 -21.70610 -20.39569 -19.33198 -19.09563 -18.66004 -18.32630 -17.86101 -17.60698 -17.42723 -17.18247 -16.79930 -16.12885 -15.68792 -15.16879 -15.12679 -15.05675 -14.56269 -14.38609 -14.23010 -14.18921 -13.94689 -13.84786 -13.36914 -13.32342 -13.09764 -13.03301 -12.80398 -12.61956 -12.49246 -12.29173 -12.13885 -11.83993 -11.82229 -11.76420 -11.56617 -11.30437 -11.06426 -10.78139 -10.72418 -10.16965 -9.66970 -9.06164 -8.36127 -6.40874 -0.16565 0.21720 0.95333 1.16263 1.26250 1.34244 1.38302 1.44578 1.53400 1.83504 2.14444 2.29280 2.69336 3.09410 3.43612 3.79144 3.97413 4.14396 4.22179 4.30579 4.34471 4.38527 4.40905 4.56854 4.58667 4.63332 4.73424 4.74917 4.77341 4.84484 4.92266 4.95685 5.03252 5.10611 5.20511 5.29032 5.40743 5.52824 5.61195 5.74356 6.21760 6.59898 6.65994 6.70757 6.84606 7.18269 7.29396 8.78817 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.002266 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.384363 B =12351.207351 C =12995.313234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.100 4.100 6 C -0.021 4.021 7 C 0.080 3.920 8 C -0.307 4.307 9 S 0.212 5.788 10 C 0.258 3.742 11 N -0.628 5.628 12 C 0.693 3.307 13 O -0.599 6.599 14 N -0.595 5.595 15 C 0.076 3.924 16 C 0.238 3.762 17 H 0.047 0.953 18 C -0.141 4.141 19 C -0.519 4.519 20 H 0.054 0.946 21 C 0.029 3.971 22 N -0.933 5.933 23 Si 0.925 3.075 24 H -0.283 1.283 25 H -0.281 1.281 26 H -0.245 1.245 27 N -0.522 5.522 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.202 0.798 36 H 0.428 0.572 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.041 -9.659 -9.780 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.312 3.688 4 O -0.428 6.428 5 C -0.138 4.138 6 C -0.061 4.061 7 C -0.052 4.052 8 C -0.447 4.447 9 S 0.462 5.538 10 C -0.110 4.110 11 N -0.283 5.283 12 C 0.393 3.607 13 O -0.479 6.479 14 N -0.328 5.328 15 C -0.066 4.066 16 C 0.136 3.864 17 H 0.065 0.935 18 C -0.199 4.199 19 C -0.558 4.558 20 H 0.072 0.928 21 C -0.171 4.171 22 N -0.572 5.572 23 Si 0.750 3.250 24 H -0.209 1.209 25 H -0.206 1.206 26 H -0.168 1.168 27 N -0.247 5.247 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.219 0.781 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.973 -8.805 -10.278 25.806 hybrid contribution -0.598 0.431 0.349 0.815 sum -22.570 -8.374 -9.929 26.041 Atomic orbital electron populations 1.23536 0.74888 1.05613 1.02533 1.86516 1.24981 1.33110 1.83713 1.24096 0.92654 0.81052 0.71044 1.90665 1.68046 1.37199 1.46894 1.21301 0.85853 0.99091 1.07523 1.19920 0.85791 0.95447 1.04959 1.19843 0.97089 0.97201 0.91077 1.27504 0.97764 1.11325 1.08148 1.85409 1.03207 1.44647 1.20537 1.23230 0.90170 1.00287 0.97303 1.41845 1.02635 1.53311 1.30471 1.15986 0.80301 0.80880 0.83486 1.90786 1.78234 1.45119 1.33772 1.47549 1.06286 1.51390 1.27603 1.21875 1.01419 0.95162 0.88144 1.19169 0.75684 0.95308 0.96267 0.93478 1.22097 0.99880 0.96896 1.01045 1.21331 1.18580 1.22331 0.93543 0.92788 1.25646 0.96249 0.95451 0.99778 1.69985 1.26043 1.29824 1.31325 0.86085 0.77351 0.79947 0.81635 1.20893 1.20630 1.16840 1.66089 1.00942 1.27894 1.29729 0.92080 0.91803 0.85289 0.86038 0.86548 0.90069 0.87968 0.78126 0.72963 0.92876 0.89066 0.89325 0.93064 0.91589 0.92769 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.37 -5.96 10.57 -51.44 -0.54 -6.50 16 3 C 0.47 8.48 7.96 71.24 0.57 9.05 16 4 O -0.54 -12.57 15.73 21.96 0.35 -12.23 16 5 C -0.10 -1.53 5.71 29.85 0.17 -1.36 16 6 C -0.02 -0.37 5.00 29.85 0.15 -0.22 16 7 C 0.08 1.80 6.07 41.44 0.25 2.06 16 8 C -0.31 -6.75 11.05 66.73 0.74 -6.01 16 9 S 0.21 6.25 20.21 -56.49 -1.14 5.11 16 10 C 0.26 7.78 8.19 179.20 1.47 9.25 16 11 N -0.63 -18.86 5.27 -327.47 -1.73 -20.59 16 12 C 0.69 26.07 8.24 179.06 1.48 27.55 16 13 O -0.60 -26.26 13.13 -3.98 -0.05 -26.31 16 14 N -0.60 -22.24 2.75 -844.87 -2.33 -24.56 16 15 C 0.08 2.10 9.30 127.77 1.19 3.29 16 16 C 0.24 10.50 2.30 44.25 0.10 10.61 16 17 H 0.05 2.30 4.05 -2.39 -0.01 2.29 16 18 C -0.14 -5.19 9.04 71.98 0.65 -4.54 16 19 C -0.52 -27.33 8.82 25.60 0.23 -27.11 16 20 H 0.05 3.05 7.67 -2.91 -0.02 3.03 16 21 C 0.03 1.60 5.47 84.65 0.46 2.06 16 22 N -0.93 -55.59 13.96 21.45 0.30 -55.30 16 23 Si 0.92 44.29 26.99 68.60 1.85 46.14 16 24 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.24 -10.89 6.82 99.48 0.68 -10.22 16 27 N -0.52 -13.97 10.39 -189.58 -1.97 -15.94 16 28 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.08 1.57 8.10 -2.38 -0.02 1.55 16 34 H 0.10 1.52 7.98 -2.39 -0.02 1.51 16 35 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.43 10.24 6.55 -92.71 -0.61 9.64 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.75 6.36 -2.38 -0.02 1.73 16 39 H 0.09 2.33 6.53 -2.39 -0.02 2.32 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 2.23 6.88 -2.39 -0.02 2.21 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.68 373.30 3.80 -67.88 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.42 Total: 16.20 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 8.65 Total: 26.11 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -5.72 Total: -116.39 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.25 Total: -45.04 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.85 Total: 46.14 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.14 Total: 5.11 kcal Total: -71.68 3.80 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129656372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.551 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds