Wall clock time and date at job start Tue Mar 31 2020 23:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47269 * 2 1 4 4 C 1.50705 * 109.46681 * 240.00046 * 2 1 3 5 5 H 1.07995 * 119.99754 * 239.99770 * 4 2 1 6 6 C 1.37876 * 120.00062 * 60.00534 * 4 2 1 7 7 N 1.31513 * 120.00103 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46547 * 269.99482 * 8 6 4 10 10 H 1.48495 * 109.47472 * 29.99193 * 8 6 4 11 11 H 1.48495 * 109.47015 * 149.99861 * 8 6 4 12 12 N 1.46896 * 109.47235 * 120.00442 * 2 1 3 13 13 C 1.46902 * 111.00274 * 176.04453 * 12 2 1 14 14 C 1.46909 * 110.99728 * 299.99523 * 12 2 1 15 15 C 1.50697 * 109.46946 * 169.99970 * 14 12 2 16 16 O 1.21286 * 120.00195 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00029 * 179.97438 * 15 14 12 18 18 C 1.39922 * 120.00281 * 174.72807 * 17 15 14 19 19 C 1.38873 * 120.07088 * 326.54954 * 18 17 15 20 20 C 1.38113 * 119.92757 * 179.74015 * 19 18 17 21 21 C 1.38279 * 120.07214 * 0.53646 * 20 19 18 22 22 S 1.76197 * 119.93168 * 179.71997 * 21 20 19 23 23 N 1.65603 * 107.21835 * 270.01846 * 22 21 20 24 24 O 1.42107 * 106.40292 * 23.55847 * 22 21 20 25 25 O 1.42099 * 106.40765 * 156.47921 * 22 21 20 26 26 C 1.38282 * 120.14187 * 359.73661 * 21 20 19 27 27 C 1.38116 * 120.06715 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47666 * 59.99482 * 1 2 3 29 29 H 1.09000 * 109.47620 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46928 * 299.99845 * 1 2 3 31 31 H 0.97002 * 120.00474 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47001 * 59.99272 * 13 12 2 33 33 H 1.08997 * 109.47505 * 179.97438 * 13 12 2 34 34 H 1.08999 * 109.46984 * 299.99753 * 13 12 2 35 35 H 1.09000 * 109.47178 * 289.99874 * 14 12 2 36 36 H 1.09001 * 109.46862 * 50.00061 * 14 12 2 37 37 H 0.97001 * 120.00080 * 354.73426 * 17 15 14 38 38 H 1.08001 * 120.03549 * 0.02562 * 19 18 17 39 39 H 1.08006 * 119.96430 * 180.27350 * 20 19 18 40 40 H 0.97004 * 119.99834 * 149.99407 * 23 22 21 41 41 H 0.96999 * 119.99956 * 330.00118 * 23 22 21 42 42 H 1.07999 * 119.96426 * 180.02562 * 26 21 20 43 43 H 1.08001 * 120.03235 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3211 -1.1204 -4.0080 9 1 3.6295 -0.5459 -4.4124 10 1 2.4856 -2.5662 -3.7121 11 1 1.3429 -0.9492 -5.1120 12 7 2.0197 -0.6926 1.1993 13 6 3.4851 -0.7946 1.1869 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6158 16 8 2.4162 -1.9573 3.4646 17 7 1.5152 -0.4795 4.8525 18 6 1.7015 -1.3282 5.9492 19 6 1.5569 -2.7012 5.7990 20 6 1.7468 -3.5367 6.8823 21 6 2.0697 -3.0066 8.1179 22 16 2.3039 -4.0753 9.4991 23 7 0.8311 -4.2558 10.2345 24 8 2.6458 -5.3483 8.9680 25 8 3.1272 -3.3698 10.4175 26 6 2.2089 -1.6395 8.2721 27 6 2.0261 -0.7991 7.1914 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7087 1.1615 -3.4844 32 1 3.9187 0.2051 1.1590 33 1 3.8210 -1.3110 2.0861 34 1 3.8029 -1.3533 0.3066 35 1 2.0520 0.9345 2.5280 36 1 0.4722 0.1324 2.3564 37 1 1.1392 0.4052 4.9824 38 1 1.3007 -3.1156 4.8351 39 1 1.6388 -4.6049 6.7651 40 1 0.6206 -5.0786 10.7032 41 1 0.1790 -3.5387 10.1966 42 1 2.4615 -1.2286 9.2384 43 1 2.1346 0.2686 7.3126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129664279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:17 Heat of formation + Delta-G solvation = -62.748000 kcal Electronic energy + Delta-G solvation = -26933.861831 eV Core-core repulsion = 22913.839386 eV Total energy + Delta-G solvation = -4020.022445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75221 -38.85468 -37.41706 -36.66617 -36.09126 -34.97576 -33.54746 -32.83159 -31.37486 -30.60903 -29.29047 -27.96291 -25.04662 -23.98208 -23.43170 -22.87730 -20.68819 -19.86857 -19.52105 -18.68606 -17.93564 -17.67459 -17.21334 -16.66213 -16.26483 -15.87348 -15.59624 -15.09389 -14.87848 -14.57327 -14.20383 -14.01304 -13.85398 -13.63121 -13.40081 -13.31738 -12.65399 -12.47610 -12.44805 -12.35529 -12.25122 -11.85010 -11.73129 -11.29902 -11.23828 -11.08551 -10.94363 -10.81246 -10.76042 -10.73146 -10.25993 -10.22506 -10.03026 -9.55954 -9.31966 -8.97562 -8.68165 -8.49284 -7.32116 -6.08372 -4.12307 0.10138 0.48070 1.01613 2.50076 2.74871 2.89362 3.20999 3.27826 3.34540 3.39847 3.49811 4.17167 4.35953 4.49732 4.54645 4.77461 4.92160 4.94445 5.16770 5.23298 5.24668 5.54920 5.57074 5.60037 5.61520 5.64859 5.82724 5.95110 6.11634 6.23676 6.34211 6.62215 6.64595 6.66556 6.81054 6.90527 7.02252 7.12831 7.37283 7.57081 7.76233 8.03244 8.12339 8.20369 8.46774 8.93934 9.52982 10.98734 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029747 B = 0.001989 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.051054 B =14070.662893 C =14457.625316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.520 5.520 13 C 0.033 3.967 14 C 0.033 3.967 15 C 0.514 3.486 16 O -0.488 6.488 17 N -0.686 5.686 18 C 0.222 3.778 19 C -0.147 4.147 20 C 0.006 3.994 21 C -0.704 4.704 22 S 2.705 3.295 23 N -1.250 6.250 24 O -0.964 6.964 25 O -0.966 6.966 26 C -0.001 4.001 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.006 0.994 31 H 0.261 0.739 32 H 0.007 0.993 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.414 0.586 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.420 0.580 41 H 0.417 0.583 42 H 0.144 0.856 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -2.240 25.136 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.098 4.098 15 C 0.302 3.698 16 O -0.359 6.359 17 N -0.332 5.332 18 C 0.125 3.875 19 C -0.168 4.168 20 C -0.014 4.014 21 C -0.793 4.793 22 S 2.794 3.206 23 N -0.923 5.923 24 O -0.954 6.954 25 O -0.955 6.955 26 C -0.021 4.021 27 C -0.197 4.197 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.250 0.750 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.250 0.750 41 H 0.243 0.757 42 H 0.162 0.838 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.591 -3.728 24.895 25.306 hybrid contribution -0.373 1.451 -1.183 1.909 sum -2.964 -2.277 23.712 24.005 Atomic orbital electron populations 1.21898 0.97659 0.99893 0.99891 1.19325 0.92355 0.92042 0.85572 0.98175 1.21122 1.31110 1.12403 0.89481 0.91652 1.24926 0.95138 0.95103 0.99090 1.69875 1.36875 1.23079 1.23550 0.86480 0.78434 0.80163 0.82271 1.20754 1.19758 1.21234 1.61931 1.10445 1.51716 1.00385 1.22357 0.87645 0.98857 1.02689 1.22045 1.03340 0.94512 0.89932 1.21472 0.77135 0.87808 0.83374 1.90697 1.37740 1.22712 1.84717 1.44028 1.64191 1.18930 1.06047 1.18159 0.91462 0.90835 0.87044 1.21402 1.02782 0.91990 1.00634 1.20823 0.90017 1.00395 0.90208 1.30441 1.22872 1.09281 1.16726 1.01369 0.72410 0.73374 0.73401 1.53164 1.37318 1.28560 1.73274 1.93603 1.81838 1.40292 1.79672 1.93602 1.64953 1.74835 1.62096 1.20706 0.91255 0.90986 0.99178 1.21012 1.05732 1.00749 0.92212 0.89318 0.94410 0.97499 0.92924 0.97426 0.92193 0.90353 0.92680 0.87260 0.74973 0.83364 0.83784 0.75038 0.75656 0.83849 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.76 37.16 0.33 -2.77 16 2 C 0.21 5.14 2.06 -68.87 -0.14 5.00 16 3 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 4 C -0.50 -13.50 7.93 -34.44 -0.27 -13.77 16 5 H 0.07 1.78 6.39 -52.49 -0.34 1.45 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 N -0.52 -10.94 4.36 -237.73 -1.04 -11.97 16 13 C 0.03 0.67 8.88 60.07 0.53 1.20 16 14 C 0.03 0.54 5.27 -4.97 -0.03 0.51 16 15 C 0.51 7.65 7.26 -10.99 -0.08 7.57 16 16 O -0.49 -9.00 12.03 5.55 0.07 -8.93 16 17 N -0.69 -7.33 5.34 -9.86 -0.05 -7.38 16 18 C 0.22 2.47 6.28 -83.70 -0.53 1.94 16 19 C -0.15 -1.81 8.66 -39.39 -0.34 -2.15 16 20 C 0.01 0.06 9.51 -39.61 -0.38 -0.32 16 21 C -0.70 -6.51 5.98 -39.55 -0.24 -6.74 16 22 S 2.71 22.96 6.28 -107.50 -0.68 22.28 16 23 N -1.25 -5.26 9.52 60.35 0.57 -4.69 16 24 O -0.96 -11.50 17.28 -57.17 -0.99 -12.49 16 25 O -0.97 -10.98 17.28 -57.17 -0.99 -11.97 16 26 C 0.00 -0.01 9.51 -39.61 -0.38 -0.39 16 27 C -0.18 -1.54 9.96 -39.39 -0.39 -1.93 16 28 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 1.17 5.82 -51.93 -0.30 0.87 16 34 H 0.08 1.71 6.23 -51.93 -0.32 1.39 16 35 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 36 H 0.11 1.63 5.83 -51.93 -0.30 1.33 16 37 H 0.41 2.91 8.82 -40.82 -0.36 2.55 16 38 H 0.15 2.07 6.43 -52.49 -0.34 1.73 16 39 H 0.14 1.35 7.61 -52.48 -0.40 0.95 16 40 H 0.42 1.14 8.96 -34.47 -0.31 0.83 16 41 H 0.42 0.80 8.96 -34.47 -0.31 0.50 16 42 H 0.14 0.91 7.61 -52.49 -0.40 0.51 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -36.27 363.49 -9.28 -45.55 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.26 Total: 2.51 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.00 Total: -10.37 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.11 Total: -48.15 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.91 Total: -33.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 22.96 SS G_CDS: -0.68 Total: 22.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.27 -9.28 -45.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129664279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.194 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds