Wall clock time and date at job start Tue Mar 31 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46994 * 2 1 4 4 C 1.50696 * 109.47414 * 120.00416 * 2 1 3 5 5 H 1.07996 * 120.00252 * 120.00109 * 4 2 1 6 6 C 1.37875 * 119.99791 * 300.00154 * 4 2 1 7 7 N 1.31519 * 120.00346 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99911 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47234 * 90.00046 * 8 6 4 10 10 H 1.48507 * 109.46687 * 209.99943 * 8 6 4 11 11 H 1.48496 * 109.47012 * 329.99463 * 8 6 4 12 12 N 1.46908 * 109.47211 * 240.00436 * 2 1 3 13 13 C 1.46894 * 110.99824 * 306.04734 * 12 2 1 14 14 C 1.46900 * 110.99966 * 69.99799 * 12 2 1 15 15 C 1.50697 * 109.47042 * 169.99981 * 14 12 2 16 16 O 1.21289 * 120.00185 * 359.97438 * 15 14 12 17 17 N 1.34781 * 119.99961 * 179.97438 * 15 14 12 18 18 C 1.39925 * 119.99818 * 174.72928 * 17 15 14 19 19 C 1.38899 * 120.06867 * 326.55916 * 18 17 15 20 20 C 1.38092 * 119.92509 * 179.72443 * 19 18 17 21 21 C 1.38305 * 120.07077 * 0.56851 * 20 19 18 22 22 C 1.38265 * 120.14232 * 359.68268 * 21 20 19 23 23 S 1.76195 * 119.96516 * 180.02562 * 22 21 20 24 24 N 1.65603 * 107.21966 * 270.02078 * 23 22 21 25 25 O 1.42096 * 106.40397 * 23.56313 * 23 22 21 26 26 O 1.42100 * 106.40260 * 156.48276 * 23 22 21 27 27 C 1.38136 * 120.06656 * 0.04202 * 22 21 20 28 28 H 1.08999 * 109.47748 * 299.99711 * 1 2 3 29 29 H 1.09007 * 109.47434 * 59.99823 * 1 2 3 30 30 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99776 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47046 * 183.95947 * 13 12 2 33 33 H 1.09005 * 109.47260 * 303.94959 * 13 12 2 34 34 H 1.08995 * 109.47728 * 63.95097 * 13 12 2 35 35 H 1.09002 * 109.47176 * 50.00360 * 14 12 2 36 36 H 1.09004 * 109.47343 * 290.00209 * 14 12 2 37 37 H 0.96998 * 119.99877 * 354.73142 * 17 15 14 38 38 H 1.07992 * 120.03959 * 359.97245 * 19 18 17 39 39 H 1.07995 * 119.96713 * 180.25131 * 20 19 18 40 40 H 1.08001 * 119.92895 * 179.70106 * 21 20 19 41 41 H 0.97007 * 119.99762 * 0.02562 * 24 23 22 42 42 H 0.96996 * 120.00623 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.02998 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 2.1372 -0.8598 3.5565 8 14 0.6246 1.2789 2.6541 9 1 -0.8029 0.8724 2.6998 10 1 0.9758 1.9949 3.9069 11 1 0.8469 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5160 -3.5795 16 8 3.1502 -1.5128 -3.4215 17 7 2.3777 0.0430 -4.8018 18 6 3.1362 -0.4596 -5.8649 19 6 4.4032 -0.9788 -5.6314 20 6 5.1469 -1.4792 -6.6819 21 6 4.6363 -1.4529 -7.9670 22 6 3.3775 -0.9319 -8.2034 23 16 2.7313 -0.9014 -9.8423 24 7 3.1865 0.5384 -10.5220 25 8 3.4143 -1.9186 -10.5619 26 8 1.3168 -0.8556 -9.7150 27 6 2.6263 -0.4351 -7.1561 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9032 -0.5281 4.4374 32 1 1.8665 -2.5519 -2.1650 33 1 1.6466 -2.5988 -0.3993 34 1 0.3556 -1.9520 -1.4400 35 1 2.1025 1.1190 -2.2604 36 1 0.6813 0.1054 -2.6088 37 1 1.7802 0.7936 -4.9446 38 1 4.8046 -0.9949 -4.6290 39 1 6.1304 -1.8868 -6.5006 40 1 5.2219 -1.8405 -8.7875 41 1 3.7143 1.1711 -10.0099 42 1 2.9261 0.7489 -11.4323 43 1 1.6433 -0.0279 -7.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129664538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:20 Heat of formation + Delta-G solvation = -52.426657 kcal Electronic energy + Delta-G solvation = -27117.691610 eV Core-core repulsion = 23098.116732 eV Total energy + Delta-G solvation = -4019.574878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77743 -38.95231 -37.49243 -37.05971 -36.17486 -34.95621 -33.62252 -32.69958 -31.66381 -30.71179 -29.75628 -27.55901 -25.35630 -24.47284 -23.88461 -22.76153 -20.97189 -19.79165 -19.43751 -18.81419 -17.79987 -17.52755 -16.95925 -16.71155 -16.54141 -16.19326 -15.66631 -15.46220 -15.14798 -14.79877 -14.45681 -14.22577 -13.87871 -13.73316 -13.43272 -12.98735 -12.66472 -12.61090 -12.51763 -12.44086 -12.37105 -12.29071 -12.06773 -11.61187 -11.48970 -11.25121 -11.18280 -10.97844 -10.93478 -10.70152 -10.50112 -10.11368 -9.80197 -9.61865 -9.51499 -9.11727 -8.63564 -8.53205 -7.47211 -6.10342 -4.09003 -0.01335 0.44145 0.84717 2.50047 2.69203 2.81587 3.12193 3.20312 3.28207 3.33310 3.40499 4.16103 4.33883 4.42008 4.61466 4.66500 4.74973 4.84638 5.05943 5.18346 5.19875 5.30499 5.43776 5.51205 5.53230 5.57519 5.82984 5.97464 6.01722 6.06811 6.14471 6.18594 6.24862 6.44007 6.55213 6.58049 6.65879 6.89115 7.06839 7.14854 7.53064 7.80519 7.90089 8.12030 8.59329 8.99365 9.50380 11.02767 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.002119 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.593024 B =13208.655412 C =13621.498312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.505 5.505 13 C 0.026 3.974 14 C 0.034 3.966 15 C 0.515 3.485 16 O -0.493 6.493 17 N -0.684 5.684 18 C 0.141 3.859 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.040 4.040 22 C -0.657 4.657 23 S 2.704 3.296 24 N -1.251 6.251 25 O -0.963 6.963 26 O -0.964 6.964 27 C -0.054 4.054 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.013 0.987 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.417 0.583 42 H 0.420 0.580 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 6.557 -27.768 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.075 3.925 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.102 0.898 6 C -0.133 4.133 7 N -0.536 5.536 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.229 5.229 13 C -0.122 4.122 14 C -0.098 4.098 15 C 0.303 3.697 16 O -0.364 6.364 17 N -0.331 5.331 18 C 0.045 3.955 19 C -0.082 4.082 20 C -0.137 4.137 21 C -0.060 4.060 22 C -0.746 4.746 23 S 2.793 3.207 24 N -0.925 5.925 25 O -0.953 6.953 26 O -0.953 6.953 27 C -0.076 4.076 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.248 0.752 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.244 0.756 42 H 0.250 0.750 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.703 4.925 -27.607 28.173 hybrid contribution -1.425 1.958 0.644 2.506 sum 1.278 6.883 -26.963 27.857 Atomic orbital electron populations 1.22863 1.01565 1.01345 0.98934 1.19849 0.88766 0.95210 0.88692 0.94226 1.20890 1.31600 1.13915 0.87544 0.89825 1.24925 0.95922 0.96613 0.95801 1.69876 1.45600 1.40225 0.97880 0.86886 0.80556 0.83847 0.76959 1.20769 1.22370 1.19432 1.61959 1.58876 1.02349 0.99675 1.22457 0.95318 0.90966 1.03429 1.22003 0.98026 0.99241 0.90521 1.21274 0.81556 0.83833 0.83055 1.90693 1.38737 1.23559 1.83409 1.43765 1.44927 1.36088 1.08346 1.17802 0.91258 0.98985 0.87442 1.21682 0.91483 0.94031 1.01016 1.21247 1.00722 0.99800 0.91970 1.20936 0.92801 0.93941 0.98352 1.30271 1.06484 1.16097 1.21703 1.01460 0.73588 0.72578 0.73035 1.53067 1.73050 1.39184 1.27244 1.93607 1.75128 1.55836 1.70684 1.93610 1.29576 1.85950 1.86148 1.20626 0.98665 0.97329 0.90997 0.93478 0.95436 0.92202 0.92570 0.91695 0.89972 0.96857 0.87926 0.92244 0.75180 0.83400 0.84378 0.83949 0.75604 0.75010 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.85 7.92 37.15 0.29 -3.56 16 2 C 0.18 4.09 1.90 -68.87 -0.13 3.96 16 3 H 0.04 0.90 6.99 -51.93 -0.36 0.54 16 4 C -0.50 -13.72 8.49 -34.44 -0.29 -14.01 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 8 Si 0.89 21.17 24.37 -169.99 -4.14 17.02 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 12 N -0.51 -10.12 4.44 -237.73 -1.06 -11.18 16 13 C 0.03 0.51 8.34 60.06 0.50 1.02 16 14 C 0.03 0.50 5.02 -4.98 -0.02 0.48 16 15 C 0.51 7.32 7.29 -10.98 -0.08 7.24 16 16 O -0.49 -8.76 12.01 5.55 0.07 -8.70 16 17 N -0.68 -7.05 5.34 -9.86 -0.05 -7.10 16 18 C 0.14 1.52 6.28 -83.69 -0.53 0.99 16 19 C -0.06 -0.70 8.66 -39.39 -0.34 -1.04 16 20 C -0.12 -1.08 10.04 -39.61 -0.40 -1.48 16 21 C -0.04 -0.34 9.52 -39.55 -0.38 -0.71 16 22 C -0.66 -5.58 5.94 -39.61 -0.24 -5.82 16 23 S 2.70 21.12 6.28 -107.50 -0.68 20.45 16 24 N -1.25 -4.48 9.55 60.35 0.58 -3.90 16 25 O -0.96 -10.49 17.28 -57.17 -0.99 -11.48 16 26 O -0.96 -10.73 17.28 -57.17 -0.99 -11.72 16 27 C -0.05 -0.49 9.44 -39.39 -0.37 -0.87 16 28 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 29 H 0.03 0.46 6.91 -51.93 -0.36 0.10 16 30 H 0.06 1.23 6.41 -51.93 -0.33 0.89 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.24 5.88 -51.93 -0.31 0.94 16 33 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 34 H 0.01 0.24 6.46 -51.93 -0.34 -0.10 16 35 H 0.10 1.34 7.93 -51.93 -0.41 0.93 16 36 H 0.06 0.78 7.06 -51.93 -0.37 0.41 16 37 H 0.41 2.76 8.82 -40.82 -0.36 2.40 16 38 H 0.15 1.91 6.43 -52.49 -0.34 1.57 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.93 7.61 -52.49 -0.40 0.53 16 41 H 0.42 0.57 8.92 -34.47 -0.31 0.26 16 42 H 0.42 0.86 8.96 -34.48 -0.31 0.55 16 43 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -37.87 355.05 -8.31 -46.18 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.10 Total: 3.26 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.08 Total: -11.95 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.24 Total: -48.41 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.91 Total: -31.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.02 kcal Atomic # 16 Polarization: 21.12 SS G_CDS: -0.68 Total: 20.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.87 -8.31 -46.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129664538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.251 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds