Wall clock time and date at job start Tue Mar 31 2020 23:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46807 * 2 1 4 4 C 1.50698 * 109.47062 * 240.00265 * 2 1 3 5 5 H 1.08001 * 119.99811 * 245.39963 * 4 2 1 6 6 C 1.37875 * 120.00246 * 65.39212 * 4 2 1 7 7 N 1.31518 * 119.99845 * 6.94801 * 6 4 2 8 8 Si 1.86805 * 120.00027 * 186.94291 * 6 4 2 9 9 H 1.48496 * 109.46893 * 94.95331 * 8 6 4 10 10 H 1.48495 * 109.46868 * 214.94901 * 8 6 4 11 11 H 1.48494 * 109.47058 * 334.94991 * 8 6 4 12 12 N 1.46898 * 109.47330 * 119.99542 * 2 1 3 13 13 C 1.46902 * 110.99599 * 58.95558 * 12 2 1 14 14 C 1.46896 * 111.00535 * 295.00278 * 12 2 1 15 15 C 1.50698 * 109.47352 * 189.99855 * 14 12 2 16 16 O 1.21287 * 119.99924 * 359.97438 * 15 14 12 17 17 N 1.34775 * 119.99873 * 180.27264 * 15 14 12 18 18 C 1.39924 * 119.99627 * 174.63067 * 17 15 14 19 19 C 1.38895 * 120.07740 * 326.50099 * 18 17 15 20 20 C 1.38082 * 119.93345 * 179.78923 * 19 18 17 21 21 C 1.38306 * 120.06948 * 0.48769 * 20 19 18 22 22 C 1.38256 * 120.13949 * 359.74274 * 21 20 19 23 23 S 1.76210 * 119.96362 * 180.02562 * 22 21 20 24 24 N 1.65597 * 107.21773 * 270.02358 * 23 22 21 25 25 O 1.42100 * 106.40057 * 23.55954 * 23 22 21 26 26 O 1.42099 * 106.39973 * 156.48184 * 23 22 21 27 27 C 1.38128 * 120.07340 * 0.02562 * 22 21 20 28 28 H 1.08996 * 109.47583 * 173.99197 * 1 2 3 29 29 H 1.09002 * 109.46983 * 293.98954 * 1 2 3 30 30 H 1.08997 * 109.47748 * 53.98430 * 1 2 3 31 31 H 0.97001 * 119.99975 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47487 * 296.04580 * 13 12 2 33 33 H 1.09004 * 109.47151 * 56.04190 * 13 12 2 34 34 H 1.09001 * 109.47374 * 176.04315 * 13 12 2 35 35 H 1.09005 * 109.47041 * 69.99327 * 14 12 2 36 36 H 1.08999 * 109.46577 * 309.99927 * 14 12 2 37 37 H 0.96999 * 120.00361 * 354.63459 * 17 15 14 38 38 H 1.08004 * 120.02924 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.96863 * 180.22786 * 20 19 18 40 40 H 1.07998 * 119.93172 * 179.76688 * 21 20 19 41 41 H 0.96999 * 120.00306 * 150.00078 * 24 23 22 42 42 H 0.96999 * 120.00020 * 329.99401 * 24 23 22 43 43 H 1.08004 * 120.03951 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5794 -1.6365 -1.1338 6 6 1.7933 -0.1780 -2.4797 7 7 1.2492 1.0139 -2.5934 8 14 2.2426 -1.1497 -4.0106 9 1 1.0521 -1.8966 -4.4898 10 1 2.7021 -0.2175 -5.0713 11 1 3.3308 -2.1071 -3.6875 12 7 2.0197 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.3680 -0.5570 3.6005 16 8 3.1156 -1.4991 3.4436 17 7 2.1758 -0.0473 4.8333 18 6 2.7540 -0.6691 5.9454 19 6 2.9042 -2.0497 5.9711 20 6 3.4791 -2.6599 7.0683 21 6 3.8962 -1.8988 8.1452 22 6 3.7438 -0.5249 8.1247 23 16 4.2773 0.4404 9.4990 24 7 2.9960 0.5596 10.5413 25 8 5.2685 -0.3274 10.1679 26 8 4.5133 1.7504 9.0017 27 6 3.1737 0.0921 7.0282 28 1 -0.3634 -1.0220 -0.1076 29 1 -0.3633 0.4178 0.9389 30 1 -0.3634 0.6042 -0.8312 31 1 1.0807 1.3883 -3.4723 32 1 0.4419 -2.0731 1.3348 33 1 1.8167 -2.5949 0.3318 34 1 1.9618 -2.5868 2.1059 35 1 0.5722 -0.0344 2.5726 36 1 1.9298 1.0870 2.3124 37 1 1.6366 0.7506 4.9496 38 1 2.5742 -2.6450 5.1325 39 1 3.5995 -3.7330 7.0873 40 1 4.3422 -2.3788 9.0037 41 1 3.1527 0.6463 11.4946 42 1 2.0888 0.5427 10.1984 43 1 3.0553 1.1655 7.0126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129664761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:23 Heat of formation + Delta-G solvation = -63.432521 kcal Electronic energy + Delta-G solvation = -27052.643670 eV Core-core repulsion = 23032.591541 eV Total energy + Delta-G solvation = -4020.052128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70727 -38.86028 -37.48640 -36.81844 -36.15492 -34.87783 -33.61067 -32.72522 -31.62007 -30.49623 -29.05775 -27.45916 -25.20199 -24.42292 -23.80133 -22.72851 -20.94147 -19.76778 -19.39103 -18.74209 -17.75950 -17.42860 -17.08257 -16.56057 -16.21904 -16.07819 -15.54897 -15.41551 -14.93559 -14.71344 -14.31693 -14.06919 -13.93594 -13.60828 -13.19338 -12.78737 -12.66229 -12.52243 -12.46257 -12.40725 -12.35389 -12.03443 -11.75238 -11.42450 -11.15583 -11.11790 -10.96521 -10.88900 -10.84546 -10.62373 -10.47760 -10.19303 -10.01396 -9.69182 -9.44695 -8.98100 -8.47315 -8.41619 -7.27664 -6.08117 -4.08000 0.02524 0.48938 0.89503 2.57710 2.75762 2.89011 3.18493 3.29134 3.36481 3.41264 3.45320 4.16402 4.38680 4.46866 4.67688 4.74645 4.86999 4.97651 5.08318 5.24755 5.27033 5.34940 5.54681 5.60023 5.62176 5.69128 5.87377 6.00537 6.10675 6.23782 6.31744 6.53269 6.59154 6.63477 6.66842 6.86085 6.93627 7.17900 7.35019 7.49191 7.77954 7.99566 8.16728 8.24352 8.49659 8.97235 9.55975 11.01911 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.002046 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.326141 B =13680.860477 C =13998.833574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.516 5.516 13 C 0.029 3.971 14 C 0.037 3.963 15 C 0.514 3.486 16 O -0.496 6.496 17 N -0.684 5.684 18 C 0.143 3.857 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.040 4.040 22 C -0.658 4.658 23 S 2.705 3.295 24 N -1.249 6.249 25 O -0.963 6.963 26 O -0.960 6.960 27 C -0.057 4.057 28 H 0.035 0.965 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.261 0.739 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.412 0.588 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -1.928 26.508 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.065 0.935 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.240 5.240 13 C -0.119 4.119 14 C -0.095 4.095 15 C 0.303 3.697 16 O -0.367 6.367 17 N -0.332 5.332 18 C 0.047 3.953 19 C -0.085 4.085 20 C -0.138 4.138 21 C -0.060 4.060 22 C -0.746 4.746 23 S 2.793 3.207 24 N -0.923 5.923 25 O -0.953 6.953 26 O -0.949 6.949 27 C -0.079 4.079 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.249 0.751 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.406 -2.133 26.090 26.180 hybrid contribution -1.857 -0.338 -1.077 2.173 sum -2.263 -2.471 25.013 25.236 Atomic orbital electron populations 1.22382 1.01077 1.00176 0.98995 1.19405 0.89360 0.95095 0.85735 0.93505 1.21074 1.34968 1.08372 0.89544 0.91716 1.24919 0.95375 0.94787 0.99040 1.69944 1.44356 1.15227 1.23772 0.86515 0.78620 0.79900 0.82622 1.20837 1.21283 1.19752 1.62129 1.59543 1.02067 1.00279 1.22390 0.95981 0.90779 1.02787 1.21958 0.97319 0.99972 0.90231 1.21417 0.81480 0.83570 0.83252 1.90672 1.34617 1.27104 1.84340 1.43808 1.52650 1.31562 1.05153 1.17817 0.97489 0.92036 0.87950 1.21614 0.95475 0.93248 0.98141 1.21223 0.98857 1.00682 0.93037 1.20887 0.94713 0.91453 0.98921 1.30400 1.18162 1.07856 1.18154 1.01482 0.72468 0.73870 0.72898 1.53141 1.23610 1.93994 1.21515 1.93598 1.56224 1.71822 1.73625 1.93624 1.83239 1.37560 1.80498 1.20657 0.94951 0.99907 0.92402 0.94579 0.97110 0.90889 0.92969 0.97113 0.90517 0.92259 0.92152 0.88085 0.75144 0.83723 0.84520 0.84057 0.74964 0.75582 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 8.21 37.16 0.30 -3.41 16 2 C 0.21 5.04 2.21 -68.87 -0.15 4.89 16 3 H 0.05 1.24 8.00 -51.93 -0.42 0.82 16 4 C -0.50 -13.48 7.93 -34.44 -0.27 -13.76 16 5 H 0.06 1.77 6.57 -52.49 -0.34 1.43 16 6 C 0.06 1.64 5.27 -17.82 -0.09 1.55 16 7 N -0.89 -25.02 12.08 55.43 0.67 -24.35 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.52 -10.84 4.48 -237.73 -1.06 -11.90 16 13 C 0.03 0.57 8.45 60.07 0.51 1.08 16 14 C 0.04 0.60 4.90 -4.98 -0.02 0.57 16 15 C 0.51 7.76 7.30 -10.99 -0.08 7.68 16 16 O -0.50 -9.15 12.00 5.55 0.07 -9.09 16 17 N -0.68 -7.58 5.34 -9.86 -0.05 -7.63 16 18 C 0.14 1.62 6.28 -83.69 -0.53 1.09 16 19 C -0.06 -0.75 8.66 -39.40 -0.34 -1.09 16 20 C -0.12 -1.12 10.04 -39.61 -0.40 -1.52 16 21 C -0.04 -0.35 9.52 -39.55 -0.38 -0.73 16 22 C -0.66 -5.88 5.97 -39.61 -0.24 -6.11 16 23 S 2.70 21.92 6.28 -107.50 -0.68 21.24 16 24 N -1.25 -4.66 9.52 60.35 0.57 -4.09 16 25 O -0.96 -10.60 17.28 -57.17 -0.99 -11.59 16 26 O -0.96 -11.10 17.28 -57.17 -0.99 -12.09 16 27 C -0.06 -0.55 9.44 -39.39 -0.37 -0.92 16 28 H 0.04 0.79 6.82 -51.93 -0.35 0.44 16 29 H 0.01 0.19 6.47 -51.93 -0.34 -0.14 16 30 H 0.07 1.80 6.94 -51.93 -0.36 1.44 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.01 0.20 6.65 -51.93 -0.35 -0.15 16 33 H 0.08 1.64 6.32 -51.93 -0.33 1.32 16 34 H 0.06 1.12 5.88 -51.93 -0.31 0.81 16 35 H 0.06 0.88 6.80 -51.93 -0.35 0.52 16 36 H 0.10 1.52 8.00 -51.93 -0.42 1.10 16 37 H 0.41 3.10 8.82 -40.82 -0.36 2.74 16 38 H 0.15 1.85 6.43 -52.48 -0.34 1.52 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.98 7.61 -52.49 -0.40 0.58 16 41 H 0.42 0.89 8.96 -34.47 -0.31 0.59 16 42 H 0.42 0.65 8.96 -34.47 -0.31 0.34 16 43 H 0.15 1.14 7.61 -52.48 -0.40 0.74 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -36.55 362.49 -9.31 -45.86 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.23 Total: 2.66 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.06 Total: -10.68 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.13 Total: -47.97 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.91 Total: -32.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 21.92 SS G_CDS: -0.68 Total: 21.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.55 -9.31 -45.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129664761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.572 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds