Wall clock time and date at job start Tue Mar 31 2020 23:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.50694 * 109.47248 * 270.27463 * 4 3 2 6 6 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00385 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99650 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00268 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47383 * 60.00120 * 9 7 5 11 11 H 1.48498 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46971 * 299.99969 * 9 7 5 13 13 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 14 14 O 1.21579 * 120.00114 * 179.72787 * 13 3 2 15 15 N 1.34777 * 119.99908 * 359.72514 * 13 3 2 16 16 C 1.39005 * 120.00206 * 179.97438 * 15 13 3 17 17 N 1.29615 * 124.94536 * 179.72072 * 16 15 13 18 18 C 1.32026 * 116.90665 * 179.77622 * 17 16 15 19 19 C 1.50700 * 122.71725 * 180.23081 * 18 17 16 20 20 C 1.53009 * 109.46883 * 305.31251 * 19 18 17 21 21 C 1.50700 * 109.46883 * 179.97438 * 20 19 18 22 22 O 1.20826 * 120.00030 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99830 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99772 * 179.97438 * 23 21 20 25 25 C 1.33408 * 114.56857 * 0.51532 * 18 17 16 26 26 S 1.70966 * 124.94311 * 0.03238 * 16 15 13 27 27 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 29 29 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 30 30 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 31 31 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 33 33 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 34 34 H 0.96998 * 120.00151 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00047 * 0.02562 * 15 13 3 36 36 H 1.08996 * 109.47370 * 65.30992 * 19 18 17 37 37 H 1.08997 * 109.47463 * 185.31571 * 19 18 17 38 38 H 1.08996 * 109.46905 * 300.00025 * 20 19 18 39 39 H 1.08997 * 109.46810 * 59.99919 * 20 19 18 40 40 H 1.08998 * 109.47451 * 299.99913 * 24 23 21 41 41 H 1.08994 * 109.47479 * 60.00751 * 24 23 21 42 42 H 1.08999 * 109.46835 * 180.02562 * 24 23 21 43 43 H 1.08003 * 125.96668 * 179.70725 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.6916 1.8266 -1.7003 6 1 4.3447 1.2202 -1.0904 7 6 4.1599 2.3784 -2.8739 8 7 3.3647 3.1174 -3.6163 9 14 5.9238 2.0765 -3.4093 10 1 6.1452 0.6187 -3.5850 11 1 6.1772 2.7746 -4.6952 12 1 6.8516 2.5966 -2.3729 13 6 2.2431 2.0164 1.1673 14 8 2.6532 3.1610 1.1673 15 7 2.0132 1.3829 2.3345 16 6 2.2454 2.0379 3.5383 17 7 2.0527 1.5238 4.7124 18 6 2.3305 2.2884 5.7524 19 6 2.1599 1.8217 7.1751 20 6 0.7269 1.3266 7.3811 21 6 0.5565 0.8593 8.8036 22 8 1.4860 0.9160 9.5736 23 8 -0.6279 0.3801 9.2154 24 6 -0.7192 -0.0522 10.5985 25 6 2.7687 3.5095 5.4417 26 16 2.8195 3.6415 3.6858 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5876 1.6880 -2.0295 33 1 2.1056 3.1398 -1.1395 34 1 3.6940 3.5053 -4.4421 35 1 1.6863 0.4697 2.3344 36 1 2.8576 1.0090 7.3771 37 1 2.3596 2.6495 7.8555 38 1 0.0292 2.1392 7.1791 39 1 0.5272 0.4987 6.7007 40 1 -0.0013 -0.8527 10.7771 41 1 -0.4982 0.7876 11.2571 42 1 -1.7266 -0.4166 10.7994 43 1 3.0437 4.2824 6.1441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129672642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:25 Heat of formation + Delta-G solvation = -64.754533 kcal Electronic energy + Delta-G solvation = -26598.754461 eV Core-core repulsion = 22578.645006 eV Total energy + Delta-G solvation = -4020.109455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77719 -40.35764 -39.37771 -36.88229 -35.83523 -34.96243 -33.28956 -32.68424 -30.33491 -29.68625 -28.08711 -27.22542 -25.43619 -24.14456 -23.22519 -22.49535 -21.03338 -20.77034 -19.25126 -17.95248 -17.67767 -17.29368 -16.98050 -16.83054 -16.54108 -16.37129 -15.46979 -15.19481 -14.67873 -14.47784 -14.21827 -14.09224 -13.86107 -13.54318 -13.27492 -13.14038 -12.92192 -12.66525 -12.56001 -12.17998 -12.10877 -11.87146 -11.59768 -11.32712 -11.18861 -11.11885 -11.03644 -10.88462 -10.73986 -10.62949 -10.54368 -10.19343 -9.79466 -9.57897 -9.49017 -8.95141 -8.50780 -8.21534 -7.75040 -6.12428 -4.17765 1.02024 1.41777 1.93586 2.12201 2.42002 2.69539 2.84428 3.27991 3.32856 3.36002 3.59806 4.09514 4.37627 4.40628 4.63884 4.76048 4.76542 4.82083 4.89845 5.11841 5.15639 5.22165 5.28317 5.42062 5.42741 5.52136 5.55232 5.77474 5.82834 5.85702 6.02893 6.06748 6.11164 6.33144 6.41175 6.51931 7.12393 7.26367 7.39755 7.45536 7.82808 7.89277 8.11108 8.25952 8.73619 8.89841 9.47573 10.95439 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002243 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.256643 B =12478.158752 C =13235.773308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.260 3.740 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.695 3.305 14 O -0.550 6.550 15 N -0.642 5.642 16 C 0.279 3.721 17 N -0.531 5.531 18 C 0.089 3.911 19 C -0.026 4.026 20 C -0.106 4.106 21 C 0.462 3.538 22 O -0.510 6.510 23 O -0.361 6.361 24 C 0.035 3.965 25 C -0.335 4.335 26 S 0.260 5.740 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -5.635 20.895 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.396 3.604 14 O -0.426 6.426 15 N -0.297 5.297 16 C -0.090 4.090 17 N -0.256 5.256 18 C -0.044 4.044 19 C -0.066 4.066 20 C -0.144 4.144 21 C 0.306 3.694 22 O -0.398 6.398 23 O -0.278 6.278 24 C -0.059 4.059 25 C -0.476 4.476 26 S 0.511 5.489 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.263 -4.474 20.043 22.137 hybrid contribution 0.706 -1.196 0.672 1.543 sum -7.557 -5.671 20.715 22.768 Atomic orbital electron populations 1.22248 0.96216 1.01866 1.02679 1.21487 0.93921 0.83765 1.02995 1.47621 1.65858 1.13559 1.05671 1.19351 0.96537 0.93616 0.76391 1.21373 0.96865 1.32345 1.06486 0.92429 1.24914 0.97943 0.94777 0.96280 1.69910 1.35857 1.33074 1.14278 0.86542 0.84635 0.78291 0.77868 1.20245 1.21133 1.20122 1.15898 0.79739 0.84870 0.79932 1.90834 1.51568 1.16463 1.83780 1.42294 1.68044 1.17873 1.01473 1.23156 1.00595 0.96606 0.88609 1.66067 1.26432 1.36972 0.96116 1.19418 1.00917 0.90128 0.93963 1.19902 0.94853 1.02210 0.89648 1.21350 0.99599 1.04121 0.89309 1.23974 0.80148 0.73864 0.91445 1.90671 1.41071 1.51685 1.56359 1.86529 1.36112 1.73830 1.31303 1.23259 1.03375 1.00161 0.79104 1.27279 1.15116 1.02459 1.02747 1.85341 1.59667 1.08116 0.95811 0.91735 0.93016 0.91590 0.88926 0.92166 0.94315 0.93415 0.92531 0.74645 0.89520 0.89455 0.87577 0.86616 0.91889 0.91911 0.88135 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.49 5.89 -4.05 -0.02 1.47 16 3 N -0.59 -11.64 2.46 -180.81 -0.44 -12.08 16 4 C 0.26 6.33 5.16 -5.20 -0.03 6.31 16 5 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 C 0.70 13.78 8.24 -86.91 -0.72 13.07 16 14 O -0.55 -12.73 13.38 5.30 0.07 -12.66 16 15 N -0.64 -10.32 5.27 -17.48 -0.09 -10.42 16 16 C 0.28 4.48 8.19 -87.35 -0.72 3.77 16 17 N -0.53 -7.76 10.38 -11.28 -0.12 -7.88 16 18 C 0.09 1.14 6.08 -84.20 -0.51 0.62 16 19 C -0.03 -0.27 5.00 -27.88 -0.14 -0.41 16 20 C -0.11 -0.96 5.71 -27.88 -0.16 -1.12 16 21 C 0.46 4.70 7.96 36.01 0.29 4.99 16 22 O -0.51 -6.40 15.73 -18.75 -0.29 -6.69 16 23 O -0.36 -3.34 10.57 -39.27 -0.41 -3.75 16 24 C 0.03 0.22 10.56 101.05 1.07 1.29 16 25 C -0.33 -4.22 11.05 29.04 0.32 -3.90 16 26 S 0.26 4.08 20.21 -107.50 -2.17 1.91 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 32 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.41 5.53 6.56 -40.82 -0.27 5.27 16 36 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 1.05 8.07 -51.93 -0.42 0.64 16 40 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 41 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -32.65 382.86 -8.64 -41.30 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.00 Total: 1.65 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.66 Total: 11.36 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.08 Total: -55.12 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.64 Total: -23.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -2.17 Total: 1.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.65 -8.64 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129672642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.459 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds