Wall clock time and date at job start Tue Mar 31 2020 23:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47473 * 2 1 4 4 C 1.34231 * 117.00522 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99471 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00312 * 180.02562 * 4 3 2 7 7 C 1.50707 * 109.47075 * 180.02562 * 6 4 3 8 8 C 1.33408 * 122.71571 * 125.00270 * 7 6 4 9 9 S 1.76165 * 108.06869 * 179.97438 * 8 7 6 10 10 C 1.70966 * 90.34299 * 359.97438 * 9 8 7 11 11 N 1.39005 * 124.94311 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00206 * 0.03238 * 11 10 9 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99908 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99864 * 359.72514 * 14 12 11 16 16 C 1.53000 * 109.47637 * 90.00039 * 15 14 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 14 12 11 18 18 C 1.50694 * 109.47248 * 90.00174 * 17 14 12 19 19 H 1.07999 * 119.99904 * 359.97438 * 18 17 14 20 20 C 1.37883 * 120.00385 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47003 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47185 * 120.00431 * 22 20 18 25 25 H 1.48507 * 109.47178 * 240.00326 * 22 20 18 26 26 N 1.29615 * 110.11092 * 0.27024 * 10 9 8 27 27 H 1.08995 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46542 * 299.99940 * 1 2 3 29 29 H 1.08999 * 109.47246 * 59.99560 * 1 2 3 30 30 H 1.09008 * 109.47239 * 239.99980 * 2 1 3 31 31 H 1.08999 * 109.47246 * 120.00440 * 2 1 3 32 32 H 1.09000 * 109.47167 * 60.00258 * 6 4 3 33 33 H 1.09005 * 109.47339 * 299.99833 * 6 4 3 34 34 H 1.08003 * 125.96668 * 359.95103 * 8 7 6 35 35 H 0.96999 * 119.99746 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47192 * 209.99937 * 15 14 12 37 37 H 1.08996 * 109.47342 * 329.99648 * 15 14 12 38 38 H 1.09002 * 109.46747 * 300.00171 * 16 15 14 39 39 H 1.08996 * 109.47074 * 59.99445 * 16 15 14 40 40 H 1.08994 * 109.47425 * 179.97438 * 16 15 14 41 41 H 1.09003 * 109.47006 * 210.00121 * 17 14 12 42 42 H 1.09004 * 109.47665 * 329.99813 * 17 14 12 43 43 H 0.96998 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4258 2.8584 -0.0014 8 6 6.1787 3.4643 -0.9210 9 16 7.8678 3.1202 -0.5575 10 6 7.3974 2.1931 0.7998 11 7 8.2728 1.5421 1.6613 12 6 9.6024 1.6172 1.4544 13 8 10.0363 2.2539 0.5140 14 7 10.4511 0.9864 2.2901 15 6 9.9286 0.2241 3.4268 16 6 9.6791 -1.2235 2.9988 17 6 11.8964 1.0675 2.0649 18 6 12.4537 2.2576 2.8024 19 1 11.7969 2.8905 3.3807 20 6 13.8021 2.5386 2.7389 21 7 14.6018 1.7682 2.0342 22 14 14.4930 4.0134 3.6536 23 1 13.3939 4.7134 4.3659 24 1 15.5078 3.5555 4.6363 25 1 15.1264 4.9443 2.6853 26 7 6.1056 2.1806 0.9049 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5853 3.4689 0.8905 33 1 3.5844 3.4700 -0.8895 34 1 5.8161 4.0612 -1.7448 35 1 7.9266 1.0339 2.4115 36 1 10.6534 0.2425 4.2407 37 1 8.9927 0.6698 3.7637 38 1 8.9543 -1.2419 2.1849 39 1 10.6150 -1.6691 2.6619 40 1 9.2907 -1.7907 3.8446 41 1 12.3727 0.1578 2.4305 42 1 12.0924 1.1767 0.9982 43 1 15.5504 1.9656 1.9898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145848519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:28 Heat of formation + Delta-G solvation = -60.223402 kcal Electronic energy + Delta-G solvation = -26931.326357 eV Core-core repulsion = 22911.413387 eV Total energy + Delta-G solvation = -4019.912970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73916 -40.22104 -39.18478 -36.68819 -35.76464 -34.73779 -32.82475 -32.28702 -31.28450 -30.28670 -28.32428 -27.18071 -24.59929 -23.65879 -23.18550 -22.60525 -21.41914 -20.70707 -19.20307 -17.95664 -17.69100 -17.35754 -16.94319 -16.55467 -16.51263 -16.04821 -15.36424 -15.13395 -14.58369 -14.45735 -14.13869 -14.02390 -13.81628 -13.38981 -13.29707 -13.05844 -12.86718 -12.82502 -12.54008 -12.16123 -12.03261 -11.87364 -11.82767 -11.34948 -11.26298 -10.99273 -10.86189 -10.74883 -10.65583 -10.61918 -10.44144 -10.17809 -9.73651 -9.52414 -9.43169 -8.89838 -8.49795 -8.19237 -7.71839 -6.10803 -4.15849 1.03558 1.45598 2.09918 2.16724 2.40835 2.74812 2.99713 3.26702 3.34723 3.38775 3.65354 4.11402 4.36832 4.42560 4.61728 4.63124 4.75325 4.87049 4.96999 5.14754 5.18502 5.23869 5.35319 5.40416 5.44233 5.47477 5.57984 5.62511 5.66257 5.90043 5.98586 6.10651 6.29875 6.38053 6.45832 6.54865 7.16115 7.29989 7.43313 7.69952 7.85065 7.94891 8.13422 8.30459 8.77253 8.93176 9.49440 10.97189 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002449 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.072506 B =11429.056754 C =12276.413786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.483 6.483 6 C -0.030 4.030 7 C 0.095 3.905 8 C -0.332 4.332 9 S 0.265 5.735 10 C 0.280 3.720 11 N -0.642 5.642 12 C 0.696 3.304 13 O -0.551 6.551 14 N -0.594 5.594 15 C 0.103 3.897 16 C -0.172 4.172 17 C 0.259 3.741 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 N -0.513 5.513 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.048 0.952 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 -1.685 -2.880 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.368 6.368 6 C -0.071 4.071 7 C -0.039 4.039 8 C -0.473 4.473 9 S 0.516 5.484 10 C -0.089 4.089 11 N -0.296 5.296 12 C 0.397 3.603 13 O -0.428 6.428 14 N -0.327 5.327 15 C -0.021 4.021 16 C -0.231 4.231 17 C 0.140 3.860 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 N -0.236 5.236 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.189 0.811 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.887 -1.698 -3.537 23.221 hybrid contribution -0.672 0.264 1.095 1.312 sum -23.559 -1.433 -2.443 23.729 Atomic orbital electron populations 1.21801 0.92707 1.02916 1.03452 1.22982 0.95180 0.80355 1.02634 1.86477 1.24782 1.32326 1.84659 1.23477 0.80335 0.92745 0.73239 1.90726 1.60130 1.42719 1.43239 1.19779 0.89060 0.91746 1.06470 1.18806 0.94682 0.97793 0.92632 1.27228 1.00237 1.12674 1.07183 1.85270 1.00299 1.43158 1.19708 1.23095 0.90007 0.98987 0.96777 1.42274 1.04509 1.52724 1.30138 1.15884 0.79125 0.81347 0.83979 1.90822 1.74249 1.45756 1.31962 1.47610 1.08628 1.50240 1.26259 1.21482 0.99363 0.91101 0.90172 1.22251 1.02510 0.96855 1.01442 1.19358 0.70353 0.97395 0.98865 1.21455 0.93039 1.11648 1.30692 0.92310 1.24924 0.96813 0.96807 0.95467 1.69934 1.04687 1.38254 1.40276 0.86424 0.78895 0.82521 0.79471 1.19810 1.20954 1.20809 1.65992 1.03269 1.24584 1.29795 0.90320 0.91484 0.91519 0.91356 0.91255 0.86347 0.86218 0.81081 0.74634 0.88926 0.92185 0.92979 0.91595 0.91755 0.94318 0.93410 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.76 10.22 -39.26 -0.40 -4.16 16 4 C 0.46 5.63 7.92 36.00 0.29 5.92 16 5 O -0.48 -7.78 15.19 -18.75 -0.28 -8.06 16 6 C -0.03 -0.30 6.31 -29.03 -0.18 -0.48 16 7 C 0.09 1.31 5.64 -84.19 -0.47 0.84 16 8 C -0.33 -4.30 11.05 29.04 0.32 -3.98 16 9 S 0.26 4.36 20.21 -107.50 -2.17 2.19 16 10 C 0.28 4.94 8.19 -87.35 -0.72 4.22 16 11 N -0.64 -11.27 5.27 -17.48 -0.09 -11.36 16 12 C 0.70 14.51 8.24 -86.91 -0.72 13.80 16 13 O -0.55 -13.19 13.38 5.30 0.07 -13.12 16 14 N -0.59 -12.16 2.46 -180.81 -0.44 -12.61 16 15 C 0.10 1.60 5.89 -4.05 -0.02 1.57 16 16 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 17 C 0.26 6.48 5.16 -5.20 -0.03 6.45 16 18 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 N -0.51 -8.53 9.72 -11.28 -0.11 -8.64 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.59 8.13 -51.92 -0.42 0.17 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.41 6.26 6.56 -40.82 -0.27 6.00 16 36 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 37 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -34.47 382.51 -8.93 -43.40 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.01 Total: 1.70 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.96 Total: 13.53 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.09 Total: -57.68 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.62 Total: -25.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.17 Total: 2.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.47 -8.93 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145848519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.826 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds