Wall clock time and date at job start Tue Mar 31 2020 23:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81403 * 109.46973 * 2 1 4 4 O 1.42102 * 110.54053 * 68.37484 * 3 2 1 5 5 O 1.42097 * 110.54512 * 291.62848 * 3 2 1 6 6 N 1.65592 * 104.44908 * 179.97438 * 3 2 1 7 7 C 1.46505 * 120.00109 * 65.00153 * 6 3 2 8 8 C 1.50695 * 109.47440 * 164.99736 * 7 6 3 9 9 O 1.21293 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00316 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99832 * 0.02562 * 10 8 7 12 12 C 1.50701 * 109.47314 * 252.76453 * 11 10 8 13 13 H 1.08001 * 120.00098 * 234.30478 * 12 11 10 14 14 C 1.37882 * 119.99801 * 54.29986 * 12 11 10 15 15 N 1.31516 * 119.99795 * 4.83522 * 14 12 11 16 16 Si 1.86800 * 119.99944 * 184.82391 * 14 12 11 17 17 H 1.48503 * 109.46614 * 60.00516 * 16 14 12 18 18 H 1.48498 * 109.47009 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47357 * 300.00847 * 16 14 12 20 20 C 1.46500 * 120.00282 * 180.02562 * 10 8 7 21 21 C 1.50701 * 109.47190 * 274.72653 * 20 10 8 22 22 C 1.38670 * 120.41480 * 274.86189 * 21 20 10 23 23 C 1.38636 * 118.41579 * 179.78187 * 22 21 20 24 24 C 1.38230 * 119.15975 * 0.51606 * 23 22 21 25 25 N 1.31857 * 120.76378 * 359.72298 * 24 23 22 26 26 C 1.31880 * 121.72329 * 0.02562 * 25 24 23 27 27 H 1.08995 * 109.47771 * 299.99944 * 1 2 3 28 28 H 1.09002 * 109.47326 * 60.00097 * 1 2 3 29 29 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47117 * 240.00426 * 2 1 3 31 31 H 1.08990 * 109.46909 * 119.99967 * 2 1 3 32 32 H 0.97001 * 120.00673 * 245.00034 * 6 3 2 33 33 H 1.09003 * 109.46713 * 44.99797 * 7 6 3 34 34 H 1.09000 * 109.47162 * 285.00061 * 7 6 3 35 35 H 1.09002 * 109.47286 * 132.76520 * 11 10 8 36 36 H 1.08999 * 109.47220 * 12.76420 * 11 10 8 37 37 H 0.97002 * 119.99776 * 174.99639 * 15 14 12 38 38 H 1.09001 * 109.47078 * 34.72540 * 20 10 8 39 39 H 1.08999 * 109.47206 * 154.72321 * 20 10 8 40 40 H 1.07990 * 120.79533 * 0.02562 * 22 21 20 41 41 H 1.07999 * 120.42008 * 180.22016 * 23 22 21 42 42 H 1.07998 * 119.61880 * 179.74819 * 24 23 22 43 43 H 1.08007 * 119.61458 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2369 6 7 3.7842 1.5654 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9400 1.2788 -1.0761 9 8 6.3760 1.9358 -0.1544 10 7 6.7726 0.8276 -2.0351 11 6 6.2459 0.0345 -3.1486 12 6 6.6579 -1.4051 -2.9790 13 1 7.1787 -1.9152 -3.7759 14 6 6.3699 -2.0711 -1.8065 15 7 5.6535 -1.4815 -0.8744 16 14 6.9971 -3.8107 -1.5422 17 1 8.4809 -3.8163 -1.6029 18 1 6.5537 -4.2999 -0.2120 19 1 6.4550 -4.6987 -2.6018 20 6 8.2043 1.1302 -1.9641 21 6 8.4639 2.4791 -2.5838 22 6 8.6482 2.5990 -3.9530 23 6 8.8798 3.8603 -4.4796 24 6 8.9297 4.9473 -3.6271 25 7 8.7548 4.7951 -2.3291 26 6 8.5275 3.6113 -1.7941 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.2982 1.8767 0.7622 33 1 4.0544 1.3767 -2.0706 34 1 4.3237 -0.1134 -1.1349 35 1 6.6439 0.4181 -4.0881 36 1 5.1581 0.1022 -3.1603 37 1 5.3894 -1.9741 -0.0816 38 1 8.5218 1.1422 -0.9214 39 1 8.7641 0.3677 -2.5056 40 1 8.6083 1.7310 -4.5942 41 1 9.0241 3.9914 -5.5418 42 1 9.1137 5.9327 -4.0289 43 1 8.3896 3.5257 -0.7263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151324611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:28 Heat of formation + Delta-G solvation = -69.321086 kcal Electronic energy + Delta-G solvation = -28576.363975 eV Core-core repulsion = 24556.056500 eV Total energy + Delta-G solvation = -4020.307476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95533 -38.70691 -36.79680 -35.67200 -35.28774 -34.08325 -33.05446 -32.97927 -31.91481 -31.19583 -27.75501 -27.31418 -24.79541 -23.93056 -23.35389 -22.87735 -21.69359 -18.97927 -18.67923 -17.55164 -17.03156 -16.68223 -16.19761 -16.06617 -15.95955 -15.46856 -15.19468 -14.95080 -14.78867 -14.35120 -14.23991 -13.77354 -13.35676 -13.22834 -13.04753 -12.80216 -12.65224 -12.42610 -12.35939 -12.02306 -11.89820 -11.81303 -11.72711 -11.57108 -11.49114 -11.35662 -11.14609 -11.02544 -10.92764 -10.42845 -10.11640 -10.05392 -9.54438 -9.18424 -9.04208 -8.98410 -8.76606 -8.52230 -7.52359 -6.38192 -4.58750 0.56371 1.39210 1.57488 3.06453 3.08427 3.15417 3.17318 3.74999 3.96181 4.05410 4.09671 4.36492 4.48387 4.72657 4.74872 4.91906 4.98829 5.07422 5.20473 5.26311 5.30193 5.40941 5.56867 5.60220 5.73531 5.79924 5.88124 5.91739 6.04658 6.18076 6.32886 6.35888 6.40381 6.51006 6.68415 6.82287 6.87842 7.02625 7.42109 7.56533 7.62718 7.82226 8.26850 8.45481 8.62347 9.13961 9.30263 10.57206 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.004963 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.858066 B = 5639.926214 C = 8130.050032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.633 4.633 3 S 2.617 3.383 4 O -0.969 6.969 5 O -0.964 6.964 6 N -1.104 6.104 7 C 0.083 3.917 8 C 0.552 3.448 9 O -0.583 6.583 10 N -0.574 5.574 11 C 0.223 3.777 12 C -0.537 4.537 13 H 0.064 0.936 14 C 0.078 3.922 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.168 3.832 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.181 4.181 24 C 0.085 3.915 25 N -0.492 5.492 26 C 0.119 3.881 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.421 0.579 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.027 0.973 36 H 0.044 0.956 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 1.549 -3.271 4.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.762 4.762 3 S 2.709 3.291 4 O -0.959 6.959 5 O -0.954 6.954 6 N -0.867 5.867 7 C -0.046 4.046 8 C 0.340 3.660 9 O -0.465 6.465 10 N -0.304 5.304 11 C 0.103 3.897 12 C -0.575 4.575 13 H 0.082 0.918 14 C -0.126 4.126 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.044 3.956 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.201 4.201 24 C -0.072 4.072 25 N -0.200 5.200 26 C -0.038 4.038 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.258 0.742 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.438 3.311 -2.246 4.685 hybrid contribution 0.684 -2.504 -0.168 2.601 sum -1.754 0.807 -2.414 3.091 Atomic orbital electron populations 1.21485 0.91103 1.04708 1.03039 1.30500 1.06429 1.26963 1.12332 1.04639 0.73227 0.77202 0.74062 1.93567 1.83670 1.73417 1.45272 1.93571 1.83865 1.72287 1.45691 1.55181 1.24767 1.78031 1.28699 1.22093 0.91681 1.03910 0.86881 1.19871 0.88136 0.76765 0.81223 1.90507 1.78071 1.42571 1.35361 1.48227 1.05345 1.50901 1.25953 1.19438 0.95591 0.90203 0.84423 1.21535 1.38708 0.96136 1.01155 0.91804 1.24992 0.94034 0.98286 0.95242 1.69380 1.36233 1.36691 1.09735 0.86496 0.79576 0.83542 0.77480 1.20087 1.21109 1.20124 1.19916 0.84254 0.90526 1.00928 1.21588 0.99619 0.98673 0.94609 1.21558 0.94983 0.97677 0.94836 1.22069 1.03194 0.93857 1.00984 1.22675 0.96458 0.98721 0.89317 1.67708 1.12001 1.26555 1.13761 1.22876 0.93169 0.86875 1.00902 0.91314 0.91153 0.90272 0.84512 0.84848 0.74168 0.90599 0.82647 0.95499 0.93753 0.91933 0.90408 0.89380 0.84860 0.85306 0.83453 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.92 37.16 0.37 -1.14 16 2 C -0.63 -7.76 6.79 37.16 0.25 -7.51 16 3 S 2.62 41.55 5.46 -107.50 -0.59 40.96 16 4 O -0.97 -17.55 18.08 -57.54 -1.04 -18.59 16 5 O -0.96 -17.93 17.50 -57.54 -1.01 -18.94 16 6 N -1.10 -19.65 5.82 -11.65 -0.07 -19.72 16 7 C 0.08 1.61 4.72 -5.19 -0.02 1.58 16 8 C 0.55 11.91 6.41 -10.99 -0.07 11.84 16 9 O -0.58 -13.49 14.84 5.55 0.08 -13.41 16 10 N -0.57 -11.69 2.11 -176.43 -0.37 -12.07 16 11 C 0.22 4.51 5.65 -5.19 -0.03 4.48 16 12 C -0.54 -11.78 9.11 -34.44 -0.31 -12.10 16 13 H 0.06 1.39 7.82 -52.49 -0.41 0.98 16 14 C 0.08 1.74 5.33 -17.82 -0.09 1.64 16 15 N -0.88 -19.76 8.26 55.43 0.46 -19.30 16 16 Si 0.90 18.20 29.54 -169.99 -5.02 13.17 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 20 C 0.17 3.11 5.43 -5.19 -0.03 3.08 16 21 C -0.14 -2.40 5.44 -104.48 -0.57 -2.97 16 22 C -0.06 -0.94 9.88 -39.28 -0.39 -1.33 16 23 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 24 C 0.09 1.21 11.18 -17.54 -0.20 1.02 16 25 N -0.49 -8.46 10.36 -13.25 -0.14 -8.60 16 26 C 0.12 2.12 10.67 -17.55 -0.19 1.93 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.42 7.74 7.66 -34.47 -0.26 7.47 16 33 H 0.08 1.42 7.10 -51.93 -0.37 1.05 16 34 H 0.16 3.07 4.96 -51.93 -0.26 2.82 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.90 5.92 -51.93 -0.31 0.59 16 37 H 0.27 5.96 8.32 -40.82 -0.34 5.62 16 38 H 0.08 1.51 7.49 -51.93 -0.39 1.12 16 39 H 0.09 1.56 7.79 -51.93 -0.40 1.15 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.16 2.92 7.68 -52.48 -0.40 2.51 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -29.72 371.69 -9.52 -39.24 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.74 Total: 13.89 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.68 Total: -2.25 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.12 Total: -59.68 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -1.96 Total: -50.94 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Atomic # 16 Polarization: 41.55 SS G_CDS: -0.59 Total: 40.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.72 -9.52 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151324611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.081 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds