Wall clock time and date at job start Tue Mar 31 2020 23:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00043 * 2 1 4 4 O 1.20826 * 119.99877 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00025 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46813 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99935 * 269.99668 * 6 5 3 8 8 H 1.08003 * 119.99969 * 202.38345 * 7 6 5 9 9 C 1.38953 * 120.00122 * 22.38165 * 7 6 5 10 10 N 1.31417 * 119.99563 * 351.21880 * 9 7 6 11 11 Si 1.86797 * 119.99994 * 171.22226 * 9 7 6 12 12 H 1.48495 * 109.47370 * 90.00326 * 11 9 7 13 13 H 1.48507 * 109.46659 * 209.99882 * 11 9 7 14 14 H 1.48500 * 109.46962 * 329.99582 * 11 9 7 15 15 C 1.34777 * 120.00016 * 90.00356 * 6 5 3 16 16 O 1.21291 * 119.99863 * 354.47062 * 15 6 5 17 17 C 1.50697 * 119.99922 * 174.74975 * 15 6 5 18 18 C 1.53004 * 109.47050 * 180.78647 * 17 15 6 19 19 H 1.08989 * 109.47320 * 55.00003 * 18 17 15 20 20 C 1.52999 * 109.47046 * 294.99892 * 18 17 15 21 21 C 1.50704 * 109.47049 * 175.00468 * 18 17 15 22 22 C 1.38229 * 119.99203 * 59.99785 * 21 18 17 23 23 C 1.38176 * 120.05251 * 180.02562 * 22 21 18 24 24 C 1.38502 * 120.02511 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.01298 * 179.97438 * 24 23 22 26 26 C 1.38391 * 119.97341 * 359.97438 * 24 23 22 27 27 C 1.38439 * 119.95283 * 359.76834 * 26 24 23 28 28 F 1.35102 * 120.01706 * 180.23026 * 27 26 24 29 29 H 1.09005 * 109.46782 * 60.00301 * 1 2 3 30 30 H 1.08994 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47412 * 299.99964 * 1 2 3 32 32 H 1.08997 * 109.47448 * 59.99674 * 5 3 2 33 33 H 1.09003 * 109.47042 * 299.99740 * 5 3 2 34 34 H 0.96997 * 119.99373 * 185.00487 * 10 9 7 35 35 H 1.08997 * 109.47390 * 300.79046 * 17 15 6 36 36 H 1.09006 * 109.47109 * 60.79238 * 17 15 6 37 37 H 1.09005 * 109.47302 * 60.00056 * 20 18 17 38 38 H 1.09000 * 109.47440 * 179.97438 * 20 18 17 39 39 H 1.08997 * 109.47727 * 299.99928 * 20 18 17 40 40 H 1.08005 * 119.97160 * 359.97438 * 22 21 18 41 41 H 1.08001 * 119.98858 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.02753 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8069 4.2137 -1.2208 9 6 3.5629 2.8766 -2.3444 10 7 2.9392 1.7199 -2.3420 11 14 3.6246 3.9013 -3.9050 12 1 4.8281 3.5319 -4.6925 13 1 2.4058 3.6449 -4.7139 14 1 3.6886 5.3417 -3.5492 15 6 4.1723 3.3258 1.1685 16 8 3.9042 2.7766 2.2162 17 6 4.7127 4.7325 1.1718 18 6 4.8510 5.2224 2.6146 19 1 5.4639 4.5201 3.1796 20 6 3.4650 5.3197 3.2553 21 6 5.5050 6.5801 2.6237 22 6 4.9071 7.6394 1.9671 23 6 5.5058 8.8847 1.9741 24 6 6.7058 9.0729 2.6397 25 9 7.2913 10.2905 2.6459 26 6 7.3048 8.0134 3.2982 27 6 6.7013 6.7674 3.2950 28 9 7.2826 5.7333 3.9415 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9565 0.7806 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 2.5738 1.3643 -3.1671 35 1 5.6891 4.7478 0.6876 36 1 4.0284 5.3859 0.6304 37 1 2.9919 4.3377 3.2487 38 1 3.5636 5.6682 4.2833 39 1 2.8521 6.0220 2.6904 40 1 3.9716 7.4934 1.4475 41 1 5.0380 9.7115 1.4605 42 1 8.2403 8.1593 3.8179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153181281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:59 Heat of formation + Delta-G solvation = -179.004044 kcal Electronic energy + Delta-G solvation = -30200.797114 eV Core-core repulsion = 25589.600291 eV Total energy + Delta-G solvation = -4611.196823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.09226 -48.97069 -39.65855 -39.18663 -38.26924 -35.69748 -34.74700 -34.30313 -31.59139 -30.88014 -29.63841 -28.65951 -27.18035 -26.03312 -24.56616 -23.75276 -22.91227 -20.79350 -19.85854 -19.18722 -18.30998 -17.43831 -16.82003 -16.59231 -16.40291 -16.01034 -15.81808 -15.48042 -15.39215 -15.32486 -15.05804 -14.58979 -14.46116 -14.33427 -14.07214 -13.90840 -13.09788 -12.94607 -12.80318 -12.62274 -12.48631 -12.32844 -11.89313 -11.79515 -11.60145 -11.46738 -11.31428 -11.21395 -10.89865 -10.77264 -10.71302 -10.49514 -10.46471 -10.30330 -9.81547 -9.54246 -9.13619 -9.02066 -8.65323 -8.51508 -7.98609 -6.47363 -4.10716 0.89860 0.93851 3.04776 3.14632 3.17568 3.29856 3.50331 3.73383 3.79855 3.97439 4.06131 4.36677 4.46475 4.53607 4.75003 4.88671 4.98454 5.09191 5.39489 5.51956 5.65564 5.70227 5.70893 5.77954 5.84894 5.93379 5.95594 6.00637 6.06245 6.11647 6.22772 6.26961 6.34212 6.38750 6.54335 6.68749 6.72012 6.86148 6.92278 7.27725 7.49684 7.63629 8.20671 8.93801 9.13968 9.32584 9.72274 10.53594 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003362 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.351159 B = 8327.298866 C = 9551.605593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.514 6.514 5 C 0.155 3.845 6 N -0.434 5.434 7 C -0.326 4.326 8 H 0.103 0.897 9 C 0.042 3.958 10 N -0.886 5.886 11 Si 0.932 3.068 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.473 3.527 16 O -0.596 6.596 17 C -0.110 4.110 18 C -0.038 4.038 19 H 0.089 0.911 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.056 4.056 23 C -0.160 4.160 24 C 0.116 3.884 25 F -0.137 7.137 26 C -0.192 4.192 27 C 0.130 3.870 28 F -0.128 7.128 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 7.439 5.196 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.400 6.400 5 C 0.030 3.970 6 N -0.153 5.153 7 C -0.453 4.453 8 H 0.121 0.879 9 C -0.161 4.161 10 N -0.526 5.526 11 Si 0.758 3.242 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.263 3.737 16 O -0.482 6.482 17 C -0.150 4.150 18 C -0.057 4.057 19 H 0.108 0.892 20 C -0.201 4.201 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.179 4.179 24 C 0.096 3.904 25 F -0.115 7.115 26 C -0.212 4.212 27 C 0.110 3.890 28 F -0.106 7.106 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.057 7.391 5.579 9.752 hybrid contribution -0.042 0.621 -1.038 1.210 sum 3.015 8.011 4.541 9.690 Atomic orbital electron populations 1.22908 0.79017 1.01728 1.01437 1.86470 1.21393 1.35614 1.85639 1.23988 0.92356 0.80373 0.69942 1.90493 1.66702 1.36476 1.46347 1.20699 0.87000 0.85485 1.03860 1.43368 1.57982 1.08511 1.05416 1.19660 1.28350 1.12181 0.85091 0.87942 1.25270 0.94400 0.96312 1.00135 1.69620 1.37033 1.17508 1.28440 0.85846 0.77768 0.80003 0.80560 1.20314 1.20793 1.19344 1.20115 0.82307 0.87798 0.83516 1.90509 1.57063 1.68954 1.31693 1.21437 1.02385 0.95676 0.95480 1.19888 0.97777 0.90657 0.97351 0.89246 1.21931 0.95092 1.04166 0.98900 1.20257 0.94093 0.98156 0.98304 1.20868 0.99754 0.90397 0.96421 1.21199 0.95207 0.99278 1.02242 1.17265 0.93049 0.80220 0.99844 1.91509 1.83770 1.41293 1.94956 1.20955 1.03143 0.91643 1.05422 1.17171 0.92402 0.83974 0.95416 1.91524 1.83543 1.56653 1.78904 0.92857 0.89669 0.93242 0.84315 0.90821 0.91600 0.90032 0.89269 0.89267 0.93616 0.93268 0.83618 0.84147 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.10 10.57 -39.27 -0.41 -8.51 16 3 C 0.49 12.08 5.94 36.00 0.21 12.29 16 4 O -0.51 -14.03 15.98 -18.75 -0.30 -14.33 16 5 C 0.15 3.67 5.21 -5.19 -0.03 3.65 16 6 N -0.43 -10.47 2.11 -116.10 -0.25 -10.72 16 7 C -0.33 -7.80 9.11 -14.93 -0.14 -7.93 16 8 H 0.10 2.26 6.61 -52.48 -0.35 1.92 16 9 C 0.04 1.01 5.41 -17.46 -0.09 0.91 16 10 N -0.89 -22.16 8.24 55.50 0.46 -21.70 16 11 Si 0.93 19.11 29.57 -169.99 -5.03 14.08 16 12 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.47 10.77 7.35 -10.99 -0.08 10.69 16 16 O -0.60 -14.59 13.57 5.55 0.08 -14.52 16 17 C -0.11 -2.00 3.36 -27.88 -0.09 -2.10 16 18 C -0.04 -0.61 2.19 -91.77 -0.20 -0.82 16 19 H 0.09 1.58 6.95 -51.93 -0.36 1.22 16 20 C -0.14 -2.33 8.75 37.16 0.32 -2.01 16 21 C -0.11 -1.47 4.79 -104.54 -0.50 -1.97 16 22 C -0.06 -0.67 8.76 -39.61 -0.35 -1.02 16 23 C -0.16 -1.72 10.02 -39.51 -0.40 -2.12 16 24 C 0.12 1.32 7.30 -39.43 -0.29 1.04 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.19 -2.23 10.01 -39.45 -0.39 -2.63 16 27 C 0.13 1.74 7.25 -39.43 -0.29 1.45 16 28 F -0.13 -1.85 16.19 2.25 0.04 -1.81 16 29 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.14 3.32 6.23 -51.93 -0.32 2.99 16 33 H 0.07 1.66 7.50 -51.93 -0.39 1.27 16 34 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 35 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 36 H 0.09 1.58 7.47 -51.93 -0.39 1.19 16 37 H 0.09 1.74 5.91 -51.93 -0.31 1.44 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.73 7.39 -51.93 -0.38 0.34 16 40 H 0.15 1.59 7.16 -52.48 -0.38 1.21 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.41 360.82 -6.13 -35.54 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.95 Total: 6.81 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.24 Total: 11.27 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.21 Total: -32.42 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.64 Total: -37.37 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.41 -6.13 -35.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153181281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.467 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds