Wall clock time and date at job start Tue Mar 31 2020 23:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00411 * 2 1 4 4 O 1.20827 * 119.99395 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00147 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37105 * 120.00071 * 263.99341 * 6 5 3 8 8 H 1.07998 * 120.00292 * 197.01497 * 7 6 5 9 9 C 1.38950 * 119.99881 * 17.00378 * 7 6 5 10 10 N 1.31416 * 119.99684 * 21.26460 * 9 7 6 11 11 Si 1.86797 * 120.00148 * 201.25545 * 9 7 6 12 12 H 1.48500 * 109.46809 * 90.00517 * 11 9 7 13 13 H 1.48500 * 109.47123 * 210.00544 * 11 9 7 14 14 H 1.48498 * 109.47387 * 330.00597 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 C 1.53005 * 109.46823 * 179.72748 * 17 15 6 19 19 H 1.08994 * 109.47158 * 305.00144 * 18 17 15 20 20 C 1.53002 * 109.46978 * 65.00411 * 18 17 15 21 21 C 1.50700 * 109.46820 * 185.00095 * 18 17 15 22 22 C 1.38231 * 119.98781 * 299.72188 * 21 18 17 23 23 C 1.38190 * 120.04905 * 179.77104 * 22 21 18 24 24 C 1.38488 * 120.02306 * 0.50683 * 23 22 21 25 25 F 1.35107 * 120.01248 * 179.76913 * 24 23 22 26 26 C 1.38401 * 119.97963 * 359.75045 * 24 23 22 27 27 C 1.38447 * 119.94641 * 359.97438 * 26 24 23 28 28 F 1.35098 * 120.00926 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46665 * 60.00213 * 1 2 3 30 30 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47217 * 300.00948 * 1 2 3 32 32 H 1.09000 * 109.47460 * 60.00059 * 5 3 2 33 33 H 1.09003 * 109.47391 * 299.99519 * 5 3 2 34 34 H 0.97005 * 119.99393 * 179.97438 * 10 9 7 35 35 H 1.08993 * 109.47211 * 299.72499 * 17 15 6 36 36 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 37 37 H 1.08994 * 109.47394 * 59.99878 * 20 18 17 38 38 H 1.08999 * 109.47007 * 180.02562 * 20 18 17 39 39 H 1.09002 * 109.46675 * 299.99435 * 20 18 17 40 40 H 1.08000 * 119.97580 * 0.02562 * 22 21 18 41 41 H 1.08001 * 119.98853 * 180.25959 * 23 22 21 42 42 H 1.07999 * 120.03216 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2958 3.3010 -1.1813 8 1 4.8551 4.2249 -1.1734 9 6 3.8947 2.7420 -2.3885 10 7 2.8949 1.8896 -2.4178 11 14 4.7765 3.2022 -3.9696 12 1 5.9066 2.2661 -4.1966 13 1 3.8272 3.1176 -5.1084 14 1 5.2966 4.5889 -3.8608 15 6 4.0551 3.3613 1.1602 16 8 3.7776 2.8116 2.2051 17 6 4.4765 4.8083 1.1587 18 6 4.4703 5.3427 2.5923 19 1 3.4897 5.1760 3.0380 20 6 5.5346 4.6120 3.4135 21 6 4.7719 6.8191 2.5793 22 6 5.9704 7.2750 2.0630 23 6 6.2462 8.6290 2.0461 24 6 5.3263 9.5299 2.5561 25 9 5.5982 10.8533 2.5437 26 6 4.1283 9.0743 3.0781 27 6 3.8506 7.7180 3.0893 28 9 2.6813 7.2719 3.5982 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7809 0.8909 34 1 2.6147 1.4997 -3.2607 35 1 5.4806 4.8938 0.7434 36 1 3.7815 5.3884 0.5517 37 1 6.5152 4.7787 2.9679 38 1 5.5299 4.9924 4.4350 39 1 5.3165 3.5441 3.4229 40 1 6.6900 6.5728 1.6688 41 1 7.1811 8.9844 1.6386 42 1 3.4102 9.7762 3.4757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153181387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:02 Heat of formation + Delta-G solvation = -181.092864 kcal Electronic energy + Delta-G solvation = -30192.069291 eV Core-core repulsion = 25580.781890 eV Total energy + Delta-G solvation = -4611.287401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.07520 -48.92760 -39.66278 -39.19242 -38.26553 -35.68671 -34.77870 -34.30242 -31.62865 -30.86420 -29.64427 -28.68717 -27.19463 -26.01780 -24.62138 -23.75021 -22.89928 -20.80659 -19.90186 -19.13225 -18.28719 -17.40804 -16.80087 -16.58939 -16.45887 -15.98528 -15.79905 -15.47790 -15.40575 -15.29192 -15.04718 -14.54052 -14.42317 -14.34645 -14.23975 -13.91220 -13.05614 -12.95829 -12.80949 -12.58139 -12.51161 -12.34370 -11.93462 -11.79383 -11.65362 -11.42326 -11.34092 -11.27417 -10.86649 -10.81000 -10.71867 -10.54727 -10.47239 -10.24693 -9.81915 -9.57151 -9.11915 -9.03742 -8.64515 -8.49809 -7.98814 -6.55101 -4.03919 0.91865 0.95495 3.04308 3.15171 3.17752 3.31109 3.46988 3.68692 3.82360 3.97632 4.05779 4.39057 4.46309 4.54130 4.75397 4.86788 4.96100 5.10391 5.39118 5.54016 5.65384 5.69775 5.72339 5.77968 5.86044 5.92513 5.94662 6.01484 6.07402 6.10684 6.15183 6.21865 6.29465 6.43541 6.51161 6.64309 6.68439 6.73343 6.82139 7.30265 7.45353 7.57563 8.18620 8.93559 9.10173 9.32773 9.73684 10.52435 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003488 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.857631 B = 8024.532307 C = 9314.946684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.499 6.499 5 C 0.157 3.843 6 N -0.430 5.430 7 C -0.337 4.337 8 H 0.105 0.895 9 C 0.038 3.962 10 N -0.867 5.867 11 Si 0.925 3.075 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.472 3.528 16 O -0.598 6.598 17 C -0.108 4.108 18 C -0.039 4.039 19 H 0.090 0.910 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.057 4.057 23 C -0.161 4.161 24 C 0.116 3.884 25 F -0.137 7.137 26 C -0.192 4.192 27 C 0.131 3.869 28 F -0.127 7.127 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.273 0.727 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 6.333 5.623 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.383 6.383 5 C 0.031 3.969 6 N -0.148 5.148 7 C -0.464 4.464 8 H 0.122 0.878 9 C -0.167 4.167 10 N -0.505 5.505 11 Si 0.751 3.249 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.262 3.738 16 O -0.485 6.485 17 C -0.148 4.148 18 C -0.058 4.058 19 H 0.108 0.892 20 C -0.200 4.200 21 C -0.108 4.108 22 C -0.075 4.075 23 C -0.180 4.180 24 C 0.096 3.904 25 F -0.115 7.115 26 C -0.212 4.212 27 C 0.112 3.888 28 F -0.105 7.105 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.597 6.293 5.982 9.824 hybrid contribution -0.316 0.606 -1.132 1.323 sum 4.281 6.899 4.850 9.458 Atomic orbital electron populations 1.22928 0.78730 1.01781 1.01638 1.86453 1.21669 1.35543 1.85724 1.23967 0.92308 0.80559 0.70643 1.90517 1.66488 1.36375 1.44950 1.20452 0.87203 0.85766 1.03473 1.43422 1.57113 1.08026 1.06256 1.19636 1.34509 1.10010 0.82237 0.87760 1.25225 0.94774 0.97091 0.99645 1.69856 1.22175 1.30482 1.27968 0.85961 0.79075 0.79123 0.80726 1.20141 1.21033 1.19374 1.20082 0.81941 0.88146 0.83641 1.90504 1.55539 1.70588 1.31829 1.21414 1.02947 0.94876 0.95555 1.19897 1.01811 0.87265 0.96828 0.89196 1.21929 0.96776 1.03115 0.98196 1.20253 0.94074 0.96928 0.99539 1.20828 0.95854 0.94602 0.96213 1.21182 1.00397 0.93133 1.03285 1.17261 0.94528 0.77736 1.00855 1.91510 1.93896 1.31602 1.94532 1.20970 0.98570 0.95165 1.06446 1.17194 0.82769 0.91229 0.97652 1.91533 1.44960 1.89652 1.84390 0.92635 0.89624 0.93160 0.86083 0.90017 0.91679 0.89876 0.89506 0.93320 0.93556 0.89358 0.83692 0.84161 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.10 10.56 -39.27 -0.41 -8.52 16 3 C 0.48 11.92 6.13 36.00 0.22 12.14 16 4 O -0.50 -13.84 15.76 -18.75 -0.30 -14.13 16 5 C 0.16 3.67 5.14 -5.20 -0.03 3.64 16 6 N -0.43 -10.33 2.18 -116.10 -0.25 -10.59 16 7 C -0.34 -8.06 9.14 -14.93 -0.14 -8.20 16 8 H 0.10 2.32 6.56 -52.49 -0.34 1.97 16 9 C 0.04 0.91 4.88 -17.47 -0.09 0.82 16 10 N -0.87 -22.00 9.27 55.50 0.51 -21.49 16 11 Si 0.92 18.64 29.60 -169.99 -5.03 13.61 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 15 C 0.47 10.79 7.13 -10.98 -0.08 10.71 16 16 O -0.60 -14.65 13.65 5.55 0.08 -14.57 16 17 C -0.11 -2.00 3.37 -27.88 -0.09 -2.10 16 18 C -0.04 -0.64 2.19 -91.77 -0.20 -0.85 16 19 H 0.09 1.70 6.94 -51.93 -0.36 1.34 16 20 C -0.14 -2.16 8.74 37.16 0.32 -1.83 16 21 C -0.11 -1.50 4.79 -104.55 -0.50 -2.00 16 22 C -0.06 -0.66 8.76 -39.60 -0.35 -1.01 16 23 C -0.16 -1.72 10.02 -39.51 -0.40 -2.12 16 24 C 0.12 1.35 7.30 -39.43 -0.29 1.06 16 25 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 26 C -0.19 -2.34 10.01 -39.44 -0.39 -2.73 16 27 C 0.13 1.85 7.24 -39.43 -0.29 1.56 16 28 F -0.13 -1.98 16.19 2.25 0.04 -1.95 16 29 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.12 2.81 6.38 -51.93 -0.33 2.48 16 33 H 0.08 1.77 7.61 -51.93 -0.40 1.38 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.08 1.36 7.14 -51.93 -0.37 0.99 16 36 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.05 0.63 7.37 -51.93 -0.38 0.24 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 40 H 0.15 1.44 7.16 -52.49 -0.38 1.07 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -30.14 361.38 -6.07 -36.21 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.96 Total: 6.61 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.22 Total: 10.94 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.26 Total: -32.08 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.63 Total: -37.22 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.14 -6.07 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153181387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.883 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds