Wall clock time and date at job start Tue Mar 31 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.46365 * 2 1 4 4 C 1.50697 * 109.46808 * 119.99246 * 2 1 3 5 5 H 1.08003 * 119.99571 * 120.00749 * 4 2 1 6 6 C 1.37878 * 120.00270 * 300.27862 * 4 2 1 7 7 N 1.31508 * 120.00135 * 359.72535 * 6 4 2 8 8 Si 1.86803 * 119.99903 * 179.72288 * 6 4 2 9 9 H 1.48502 * 109.46711 * 90.00116 * 8 6 4 10 10 H 1.48495 * 109.47316 * 210.00018 * 8 6 4 11 11 H 1.48501 * 109.47212 * 330.00327 * 8 6 4 12 12 N 1.46488 * 109.47429 * 239.99832 * 2 1 3 13 13 C 1.34777 * 120.00267 * 84.99737 * 12 2 1 14 14 O 1.21585 * 119.99911 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00070 * 180.02562 * 13 12 2 16 16 C 1.39948 * 120.00012 * 174.69284 * 15 13 12 17 17 C 1.38891 * 120.06777 * 326.56309 * 16 15 13 18 18 C 1.38094 * 119.92651 * 179.75007 * 17 16 15 19 19 C 1.38302 * 120.07201 * 0.52643 * 18 17 16 20 20 C 1.38258 * 120.13783 * 359.75275 * 19 18 17 21 21 S 1.76205 * 119.96281 * 179.97438 * 20 19 18 22 22 O 1.42095 * 106.40086 * 23.50914 * 21 20 19 23 23 O 1.42091 * 106.40219 * 156.43760 * 21 20 19 24 24 N 1.65606 * 107.21471 * 269.97280 * 21 20 19 25 25 C 1.46501 * 119.99783 * 90.00275 * 24 21 20 26 26 C 1.46499 * 119.99987 * 270.00165 * 24 21 20 27 27 C 1.38133 * 120.07220 * 359.97032 * 20 19 18 28 28 H 1.08998 * 109.47261 * 300.00530 * 1 2 3 29 29 H 1.09001 * 109.47080 * 60.00495 * 1 2 3 30 30 H 1.08997 * 109.46879 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00350 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99827 * 265.00154 * 12 2 1 33 33 H 0.97000 * 120.00254 * 354.68056 * 15 13 12 34 34 H 1.08001 * 120.03190 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.95954 * 180.27766 * 18 17 16 36 36 H 1.08002 * 119.92876 * 179.76409 * 19 18 17 37 37 H 1.08999 * 109.47302 * 359.97438 * 25 24 21 38 38 H 1.08994 * 109.47267 * 120.00099 * 25 24 21 39 39 H 1.09003 * 109.46599 * 239.99787 * 25 24 21 40 40 H 1.08996 * 109.47266 * 89.99745 * 26 24 21 41 41 H 1.09004 * 109.46608 * 210.00309 * 26 24 21 42 42 H 1.09000 * 109.46790 * 329.99632 * 26 24 21 43 43 H 1.08005 * 120.03388 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6533 -1.5883 1.1315 6 6 1.6945 -0.2424 2.4828 7 7 0.9384 0.8268 2.6034 8 14 2.3107 -1.1274 4.0081 9 1 3.6176 -0.5541 4.4189 10 1 1.3284 -0.9592 5.1088 11 1 2.4764 -2.5726 3.7089 12 7 2.0184 -0.6906 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 8 1.8584 1.1615 -2.4116 15 7 2.5960 -0.6538 -3.4575 16 6 2.6248 0.0128 -4.6877 17 6 1.6508 0.9552 -4.9915 18 6 1.6850 1.6150 -6.2041 19 6 2.6813 1.3304 -7.1201 20 6 3.6489 0.3886 -6.8230 21 16 4.9158 0.0290 -7.9938 22 8 5.0242 1.1718 -8.8313 23 8 6.0080 -0.4987 -7.2537 24 7 4.3621 -1.2025 -8.9524 25 6 3.6178 -0.8993 -10.1773 26 6 4.6165 -2.5952 -8.5756 27 6 3.6236 -0.2708 -5.6095 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7004 1.1557 3.4843 32 1 2.2491 -1.6318 -1.1524 33 1 2.8993 -1.5732 -3.3969 34 1 0.8702 1.1750 -4.2782 35 1 0.9305 2.3512 -6.4390 36 1 2.7036 1.8450 -8.0693 37 1 3.5282 0.1811 -10.2900 38 1 4.1476 -1.3118 -11.0359 39 1 2.6234 -1.3418 -10.1171 40 1 3.7996 -2.9578 -7.9517 41 1 4.6868 -3.2077 -9.4746 42 1 5.5525 -2.6561 -8.0204 43 1 4.3801 -1.0061 -5.3779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153317193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:11 Heat of formation + Delta-G solvation = -64.639059 kcal Electronic energy + Delta-G solvation = -27251.169186 eV Core-core repulsion = 23231.064738 eV Total energy + Delta-G solvation = -4020.104448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38210 -38.57151 -37.53247 -36.51126 -36.05625 -35.26840 -34.33804 -32.50734 -31.33636 -30.01311 -28.50506 -28.28784 -25.32023 -25.04101 -23.66101 -22.92527 -21.42891 -20.03358 -19.24641 -18.39903 -18.31571 -17.72929 -16.63044 -16.32454 -16.26304 -15.78347 -15.36850 -15.05371 -14.81303 -14.68160 -14.36332 -14.14368 -13.82287 -13.54762 -13.37056 -13.00076 -12.96140 -12.75279 -12.47787 -12.39091 -12.31578 -11.93146 -11.90158 -11.83453 -11.81711 -11.21586 -11.11464 -11.03561 -10.84579 -10.42267 -10.30760 -10.28809 -9.64410 -9.53902 -9.27362 -9.13071 -8.62377 -8.30396 -7.91083 -6.18343 -4.27842 0.09702 0.75776 1.18097 2.63369 3.00416 3.21379 3.28348 3.29780 3.32040 3.51926 3.83365 4.06201 4.27437 4.41458 4.65251 4.79330 4.89090 4.93654 4.98837 5.11312 5.14639 5.18808 5.29868 5.37340 5.40568 5.43986 5.52817 5.58759 5.83229 6.11020 6.15315 6.26763 6.41735 6.70724 6.88262 6.94538 7.01298 7.12359 7.34530 7.55356 7.73763 7.90095 8.08008 8.62767 8.75080 9.09982 9.40109 10.87764 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.002268 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.223755 B =12341.473017 C =12869.144718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.716 5.716 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.697 5.697 16 C 0.168 3.832 17 C -0.066 4.066 18 C -0.118 4.118 19 C -0.049 4.049 20 C -0.657 4.657 21 S 2.696 3.304 22 O -0.956 6.956 23 O -0.954 6.954 24 N -1.006 6.006 25 C 0.085 3.915 26 C 0.082 3.918 27 C -0.061 4.061 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.405 0.595 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -7.172 -24.661 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.345 5.345 16 C 0.070 3.930 17 C -0.086 4.086 18 C -0.138 4.138 19 C -0.069 4.069 20 C -0.745 4.745 21 S 2.787 3.213 22 O -0.946 6.946 23 O -0.945 6.945 24 N -0.845 5.845 25 C -0.060 4.060 26 C -0.063 4.063 27 C -0.084 4.084 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.240 0.760 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.148 -5.604 -24.477 25.307 hybrid contribution -0.223 -1.451 1.392 2.023 sum 2.926 -7.056 -23.085 24.315 Atomic orbital electron populations 1.22107 0.98423 0.99143 1.00980 1.18720 0.90898 0.93807 0.78792 0.93211 1.21189 1.32572 1.13439 0.90198 0.92031 1.24882 0.94738 0.94980 0.99088 1.69891 1.35624 1.22452 1.24021 0.86414 0.78618 0.79791 0.82055 1.20507 1.21026 1.19853 1.45897 1.68145 1.13343 1.09268 1.16166 0.78839 0.85370 0.80377 1.90893 1.56833 1.14019 1.84153 1.42895 1.69052 1.16462 1.06093 1.17563 0.94182 0.95840 0.85390 1.21669 0.96961 0.93962 0.96058 1.21188 0.99094 1.00045 0.93451 1.20785 0.92374 0.94123 0.99650 1.30605 1.20380 1.10128 1.13433 1.01887 0.73777 0.72642 0.73026 1.93570 1.85844 1.48552 1.66624 1.93572 1.49212 1.79327 1.72362 1.57292 1.72249 1.19372 1.35569 1.21595 0.96192 1.02651 0.85569 1.21619 1.02155 0.80764 1.01783 1.20511 0.95766 0.99569 0.92528 0.88976 0.96644 0.95457 0.92473 0.78019 0.75988 0.83473 0.84769 0.84555 0.89538 0.91581 0.91953 0.92459 0.90471 0.89699 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 2 C 0.28 6.94 2.56 -69.09 -0.18 6.76 16 3 H 0.05 1.44 7.58 -51.92 -0.39 1.05 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.48 11.31 55.43 0.63 -23.85 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.72 -14.34 5.07 -59.82 -0.30 -14.64 16 13 C 0.69 13.53 8.27 -86.92 -0.72 12.81 16 14 O -0.58 -13.56 13.70 5.29 0.07 -13.49 16 15 N -0.70 -10.25 5.35 -14.22 -0.08 -10.33 16 16 C 0.17 2.43 6.28 -83.69 -0.53 1.91 16 17 C -0.07 -0.97 8.66 -39.39 -0.34 -1.31 16 18 C -0.12 -1.42 10.04 -39.61 -0.40 -1.82 16 19 C -0.05 -0.55 9.52 -39.55 -0.38 -0.92 16 20 C -0.66 -7.68 5.97 -39.61 -0.24 -7.92 16 21 S 2.70 29.34 5.69 -107.50 -0.61 28.72 16 22 O -0.96 -12.28 15.84 -57.17 -0.91 -13.18 16 23 O -0.95 -12.74 15.88 -57.17 -0.91 -13.65 16 24 N -1.01 -7.64 3.58 -129.21 -0.46 -8.11 16 25 C 0.09 0.47 10.67 59.85 0.64 1.11 16 26 C 0.08 0.48 10.70 59.85 0.64 1.12 16 27 C -0.06 -0.77 9.44 -39.40 -0.37 -1.14 16 28 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 6.54 8.56 -40.82 -0.35 6.19 16 33 H 0.40 4.44 8.83 -40.82 -0.36 4.08 16 34 H 0.15 2.44 6.42 -52.49 -0.34 2.10 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.14 1.21 7.61 -52.49 -0.40 0.81 16 37 H 0.09 0.49 6.91 -51.93 -0.36 0.14 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.29 8.07 -51.93 -0.42 -0.12 16 42 H 0.08 0.54 7.02 -51.93 -0.36 0.18 16 43 H 0.14 1.49 7.62 -52.48 -0.40 1.09 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -34.70 372.17 -9.67 -44.38 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.77 Total: 8.37 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.92 Total: -5.15 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.22 Total: -56.93 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.74 Total: -40.32 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 29.34 SS G_CDS: -0.61 Total: 28.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.70 -9.67 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153317193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.263 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds