Wall clock time and date at job start Tue Mar 31 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46820 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00076 * 2 1 3 5 5 H 1.07999 * 120.00014 * 275.30204 * 4 2 1 6 6 C 1.37872 * 119.99712 * 95.30658 * 4 2 1 7 7 N 1.31514 * 119.99842 * 185.69885 * 6 4 2 8 8 Si 1.86800 * 120.00247 * 5.70007 * 6 4 2 9 9 H 1.48492 * 109.47236 * 84.96527 * 8 6 4 10 10 H 1.48509 * 109.46947 * 204.96638 * 8 6 4 11 11 H 1.48505 * 109.46955 * 324.96330 * 8 6 4 12 12 N 1.46495 * 109.46978 * 120.00220 * 2 1 3 13 13 C 1.34773 * 120.00116 * 274.99749 * 12 2 1 14 14 O 1.21592 * 120.00220 * 0.02562 * 13 12 2 15 15 N 1.34782 * 120.00431 * 180.02562 * 13 12 2 16 16 C 1.39943 * 120.00394 * 174.77845 * 15 13 12 17 17 C 1.38884 * 120.06800 * 326.71040 * 16 15 13 18 18 C 1.38092 * 119.92947 * 179.72183 * 17 16 15 19 19 C 1.38305 * 120.07097 * 0.57831 * 18 17 16 20 20 C 1.38259 * 120.13671 * 359.69608 * 19 18 17 21 21 S 1.76192 * 119.96708 * 180.02562 * 20 19 18 22 22 O 1.42104 * 106.39888 * 23.51835 * 21 20 19 23 23 O 1.42102 * 106.40556 * 156.43891 * 21 20 19 24 24 N 1.65601 * 107.21919 * 269.98008 * 21 20 19 25 25 C 1.46507 * 120.00130 * 89.99951 * 24 21 20 26 26 C 1.46494 * 120.00162 * 269.99291 * 24 21 20 27 27 C 1.38142 * 120.07066 * 0.02562 * 20 19 18 28 28 H 1.09007 * 109.47208 * 185.34543 * 1 2 3 29 29 H 1.09002 * 109.46846 * 305.33685 * 1 2 3 30 30 H 1.08993 * 109.47478 * 65.34407 * 1 2 3 31 31 H 0.97005 * 120.00130 * 180.02562 * 7 6 4 32 32 H 0.97004 * 119.99920 * 95.00092 * 12 2 1 33 33 H 0.96997 * 119.99395 * 354.50002 * 15 13 12 34 34 H 1.08004 * 120.03882 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.96671 * 180.27262 * 18 17 16 36 36 H 1.07988 * 119.93252 * 179.71419 * 19 18 17 37 37 H 1.08995 * 109.47328 * 89.99643 * 25 24 21 38 38 H 1.09002 * 109.47045 * 210.00131 * 25 24 21 39 39 H 1.09001 * 109.46860 * 330.00197 * 25 24 21 40 40 H 1.09008 * 109.46703 * 90.00199 * 26 24 21 41 41 H 1.08995 * 109.47641 * 209.99848 * 26 24 21 42 42 H 1.08996 * 109.47197 * 330.00720 * 26 24 21 43 43 H 1.08000 * 120.03599 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1308 -1.7859 -1.2307 6 6 2.3662 0.0127 -2.3559 7 7 2.6969 -0.6122 -3.4649 8 14 2.3487 1.8799 -2.3056 9 1 3.6458 2.3730 -1.7770 10 1 2.1394 2.4101 -3.6770 11 1 1.2470 2.3411 -1.4231 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8576 1.1613 2.4119 15 7 2.5968 -0.6536 3.4575 16 6 2.8345 0.0669 4.6334 17 6 3.2860 1.3786 4.5666 18 6 3.5141 2.0888 5.7287 19 6 3.3049 1.4913 6.9584 20 6 2.8609 0.1838 7.0283 21 16 2.5952 -0.5727 8.5972 22 8 2.3742 0.4849 9.5203 23 8 1.6641 -1.6246 8.3830 24 7 4.0190 -1.2918 9.0421 25 6 5.0093 -0.5392 9.8162 26 6 4.2884 -2.6806 8.6617 27 6 2.6254 -0.5301 5.8693 28 1 -0.3634 -1.0233 0.0957 29 1 -0.3633 0.5944 0.8384 30 1 -0.3634 0.4287 -0.9339 31 1 2.9322 -0.1035 -4.2566 32 1 2.2491 -1.6318 1.1525 33 1 2.7519 -1.6108 3.4354 34 1 3.4539 1.8444 3.6067 35 1 3.8610 3.1103 5.6774 36 1 3.4884 2.0473 7.8658 37 1 4.8188 -0.6761 10.8807 38 1 6.0092 -0.9010 9.5765 39 1 4.9366 0.5196 9.5674 40 1 4.7913 -2.7015 7.6948 41 1 4.9262 -3.1460 9.4131 42 1 3.3481 -3.2277 8.5940 43 1 2.2782 -1.5513 5.9246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153317309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:15 Heat of formation + Delta-G solvation = -65.029498 kcal Electronic energy + Delta-G solvation = -27360.245269 eV Core-core repulsion = 23340.123891 eV Total energy + Delta-G solvation = -4020.121378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46563 -38.66459 -37.54341 -36.53146 -36.07984 -35.38480 -34.42323 -32.48601 -31.38427 -30.46012 -28.78025 -28.49550 -25.38500 -25.07519 -23.71085 -22.97654 -21.40179 -20.03002 -19.29977 -18.55982 -18.37781 -17.72648 -16.74764 -16.45549 -16.36761 -16.05536 -15.48686 -15.09414 -14.86324 -14.61220 -14.38006 -14.15086 -13.93139 -13.56287 -13.37259 -13.12795 -13.00681 -12.72695 -12.60060 -12.52256 -12.41467 -12.32990 -12.01417 -11.90480 -11.86371 -11.62749 -11.18696 -11.15242 -10.91078 -10.68338 -10.41135 -9.96787 -9.74089 -9.55393 -9.32965 -9.27956 -8.77956 -8.42985 -8.03211 -6.31331 -4.35566 0.06960 0.71448 1.13129 2.60515 2.91121 3.21630 3.25891 3.29006 3.36126 3.48505 3.74285 4.02858 4.25566 4.37332 4.55680 4.67118 4.83430 4.89052 4.95689 5.05653 5.11587 5.18633 5.25610 5.34461 5.38061 5.39777 5.51290 5.54186 5.78970 6.08270 6.09554 6.21320 6.24120 6.37025 6.47858 6.61957 6.77605 6.89508 7.01044 7.23053 7.37219 7.46376 8.14651 8.53472 8.69888 8.96582 9.30242 10.80129 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.002416 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.841803 B =11585.094401 C =11882.251087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.246 3.754 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.711 5.711 13 C 0.692 3.308 14 O -0.587 6.587 15 N -0.695 5.695 16 C 0.167 3.833 17 C -0.066 4.066 18 C -0.118 4.118 19 C -0.049 4.049 20 C -0.658 4.658 21 S 2.696 3.304 22 O -0.955 6.955 23 O -0.955 6.955 24 N -1.007 6.007 25 C 0.093 3.907 26 C 0.081 3.919 27 C -0.060 4.060 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.392 0.608 33 H 0.407 0.593 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 -2.151 25.069 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.144 3.856 3 H 0.070 0.930 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.363 5.363 13 C 0.392 3.608 14 O -0.465 6.465 15 N -0.343 5.343 16 C 0.069 3.931 17 C -0.087 4.087 18 C -0.138 4.138 19 C -0.069 4.069 20 C -0.746 4.746 21 S 2.787 3.213 22 O -0.945 6.945 23 O -0.945 6.945 24 N -0.846 5.846 25 C -0.053 4.053 26 C -0.064 4.064 27 C -0.083 4.083 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.242 0.758 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.772 -1.095 25.222 25.898 hybrid contribution 0.662 0.204 -0.955 1.180 sum 6.434 -0.891 24.268 25.122 Atomic orbital electron populations 1.22251 0.98520 1.00136 0.99921 1.19105 0.90871 0.94115 0.81509 0.93048 1.20982 1.45466 0.95627 0.94864 0.90287 1.24939 0.93532 0.98735 0.95094 1.69879 1.44482 1.36315 1.01538 0.86880 0.79801 0.85694 0.77497 1.19852 1.21103 1.18389 1.46066 1.68107 1.13809 1.08296 1.16260 0.78461 0.85612 0.80458 1.90881 1.56977 1.14434 1.84212 1.42874 1.70113 1.11599 1.09717 1.17563 0.97418 0.92871 0.85222 1.21672 0.93355 0.93377 1.00296 1.21191 1.00568 1.00316 0.91690 1.20795 0.94859 0.92342 0.98909 1.30629 1.17508 1.06271 1.20155 1.01903 0.72490 0.73211 0.73695 1.93578 1.83663 1.56562 1.60692 1.93572 1.58645 1.55847 1.86441 1.57330 1.37555 1.21682 1.68007 1.21519 0.92238 0.95897 0.95621 1.21647 1.03283 0.80542 1.00908 1.20508 0.97435 1.00364 0.89992 0.93616 0.95126 0.92491 0.92119 0.77461 0.75806 0.83478 0.84769 0.84537 0.92122 0.90748 0.90852 0.92418 0.90428 0.89694 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.47 37.16 0.35 -2.87 16 2 C 0.25 5.68 2.24 -69.08 -0.15 5.53 16 3 H 0.05 1.29 4.67 -51.93 -0.24 1.05 16 4 C -0.53 -13.82 9.04 -34.44 -0.31 -14.14 16 5 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.48 13.96 55.43 0.77 -24.70 16 8 Si 0.87 21.04 27.02 -169.99 -4.59 16.45 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -6.18 6.78 56.52 0.38 -5.79 16 12 N -0.71 -13.65 5.07 -59.81 -0.30 -13.96 16 13 C 0.69 12.93 8.27 -86.92 -0.72 12.21 16 14 O -0.59 -12.98 13.69 5.29 0.07 -12.91 16 15 N -0.70 -9.87 5.35 -14.22 -0.08 -9.94 16 16 C 0.17 2.34 6.28 -83.69 -0.53 1.82 16 17 C -0.07 -0.95 8.66 -39.40 -0.34 -1.29 16 18 C -0.12 -1.38 10.04 -39.61 -0.40 -1.78 16 19 C -0.05 -0.53 9.52 -39.55 -0.38 -0.91 16 20 C -0.66 -7.46 5.97 -39.61 -0.24 -7.70 16 21 S 2.70 28.64 5.65 -107.50 -0.61 28.03 16 22 O -0.95 -12.12 16.35 -57.17 -0.93 -13.05 16 23 O -0.95 -12.39 15.88 -57.17 -0.91 -13.30 16 24 N -1.01 -7.48 3.58 -129.20 -0.46 -7.94 16 25 C 0.09 0.50 10.29 59.85 0.62 1.12 16 26 C 0.08 0.46 10.66 59.84 0.64 1.10 16 27 C -0.06 -0.73 9.44 -39.39 -0.37 -1.10 16 28 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.39 6.45 8.61 -40.82 -0.35 6.10 16 33 H 0.41 4.28 8.83 -40.82 -0.36 3.92 16 34 H 0.15 2.39 6.41 -52.48 -0.34 2.06 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 39 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 40 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 41 H 0.08 0.28 8.07 -51.93 -0.42 -0.13 16 42 H 0.08 0.53 7.02 -51.93 -0.36 0.16 16 43 H 0.14 1.42 7.62 -52.49 -0.40 1.02 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -35.26 372.73 -9.16 -44.42 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.81 Total: 7.18 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.93 Total: -5.88 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.07 Total: -56.55 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.77 Total: -39.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.45 kcal Atomic # 16 Polarization: 28.64 SS G_CDS: -0.61 Total: 28.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.26 -9.16 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153317309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.609 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds