Wall clock time and date at job start Tue Mar 31 2020 23:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47037 * 2 1 4 4 C 1.46500 * 120.00037 * 269.99692 * 3 2 1 5 5 C 1.50702 * 109.47501 * 270.00040 * 4 3 2 6 6 H 1.07998 * 119.99523 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99801 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47197 * 120.00012 * 9 7 5 12 12 H 1.48503 * 109.47293 * 240.00040 * 9 7 5 13 13 C 1.34783 * 119.99956 * 90.00381 * 3 2 1 14 14 O 1.21277 * 119.99835 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99888 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.47074 * 180.02562 * 15 13 3 17 17 C 1.35607 * 116.99688 * 179.97438 * 16 15 13 18 18 C 1.38445 * 120.14563 * 0.25914 * 17 16 15 19 19 C 1.38459 * 120.16162 * 180.29506 * 18 17 16 20 20 F 1.35107 * 119.77869 * 179.72144 * 19 18 17 21 21 C 1.38788 * 120.44912 * 359.69942 * 19 18 17 22 22 C 1.37912 * 120.27964 * 0.02562 * 21 19 18 23 23 F 1.35103 * 120.08264 * 180.02562 * 22 21 19 24 24 C 1.40369 * 119.82955 * 359.97438 * 22 21 19 25 25 C 1.46463 * 120.21772 * 179.97438 * 24 22 21 26 26 C 1.50697 * 120.00269 * 0.27890 * 25 24 22 27 27 O 1.21343 * 119.99780 * 180.02562 * 25 24 22 28 28 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47262 * 300.00318 * 1 2 3 30 30 H 1.09007 * 109.46952 * 59.99475 * 1 2 3 31 31 H 1.08997 * 109.47117 * 240.00149 * 2 1 3 32 32 H 1.08994 * 109.46922 * 119.99905 * 2 1 3 33 33 H 1.08997 * 109.46948 * 30.00549 * 4 3 2 34 34 H 1.09005 * 109.46998 * 150.00578 * 4 3 2 35 35 H 0.97008 * 119.99735 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46972 * 60.00292 * 15 13 3 37 37 H 1.08994 * 109.47317 * 300.00251 * 15 13 3 38 38 H 1.08001 * 119.92289 * 0.04141 * 18 17 16 39 39 H 1.07996 * 119.86198 * 180.02562 * 21 19 18 40 40 H 1.09001 * 109.47438 * 179.72540 * 26 25 24 41 41 H 1.09004 * 109.46801 * 299.72501 * 26 25 24 42 42 H 1.09000 * 109.46987 * 59.71732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9131 2.0956 -3.4175 10 1 6.6005 1.2396 -2.4174 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3965 -3.5262 13 6 2.2430 2.0166 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 8 2.3005 2.1819 3.5585 17 6 2.1268 1.6935 4.8116 18 6 1.6740 0.3983 4.9964 19 6 1.4906 -0.0987 6.2756 20 9 1.0431 -1.3619 6.4470 21 6 1.7639 0.6918 7.3831 22 6 2.2211 1.9827 7.2204 23 9 2.4864 2.7485 8.3013 24 6 2.4112 2.4985 5.9288 25 6 2.8959 3.8684 5.7460 26 6 3.1983 4.7272 6.9469 27 8 3.0583 4.3104 4.6277 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1411 -1.1384 35 1 3.6752 3.5162 -4.4440 36 1 2.6213 0.4186 2.5302 37 1 0.9434 1.0125 2.5299 38 1 1.4593 -0.2246 4.1406 39 1 1.6179 0.2944 8.3767 40 1 3.5495 5.7045 6.6156 41 1 2.2941 4.8491 7.5433 42 1 3.9699 4.2492 7.5504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155785629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:28 Heat of formation + Delta-G solvation = -161.368555 kcal Electronic energy + Delta-G solvation = -29704.151493 eV Core-core repulsion = 25093.719402 eV Total energy + Delta-G solvation = -4610.432091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.66276 -49.54127 -40.84027 -39.27778 -38.45551 -37.24374 -35.36684 -32.86632 -31.90180 -30.70932 -30.22582 -29.82976 -28.71907 -26.56315 -24.14771 -23.40360 -23.10957 -22.34359 -20.63870 -19.17665 -18.86120 -17.72581 -17.19523 -16.87635 -16.73715 -16.52224 -16.40927 -16.08465 -15.89585 -15.82777 -15.37687 -14.85967 -14.75931 -14.69515 -14.60786 -14.25055 -14.04715 -13.56822 -13.36038 -13.05812 -12.71834 -12.41892 -12.34759 -12.23703 -12.10023 -11.95036 -11.89686 -11.65837 -11.28579 -11.14859 -10.94352 -10.78098 -10.59307 -10.15907 -9.76285 -9.65780 -9.33441 -9.01678 -8.85749 -8.45790 -7.77773 -6.06695 -4.11564 0.04590 0.61898 2.10789 2.41816 3.04652 3.21293 3.29320 3.32043 3.37608 3.41520 3.73807 3.80166 3.94952 4.18212 4.34829 4.43443 4.46616 4.75837 4.88257 4.90837 4.99303 5.13520 5.20721 5.22899 5.28372 5.28479 5.33836 5.39307 5.49843 5.55646 5.63767 5.88967 5.92482 6.06710 6.12535 6.36960 6.80518 7.02488 7.38434 7.46021 7.55326 7.89285 8.18928 8.26207 8.83679 8.98053 9.53677 11.01536 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.002966 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.344374 B = 9438.363857 C =10676.600957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.504 6.504 15 C 0.028 3.972 16 O -0.241 6.241 17 C 0.246 3.754 18 C -0.275 4.275 19 C 0.204 3.796 20 F -0.121 7.121 21 C -0.247 4.247 22 C 0.215 3.785 23 F -0.113 7.113 24 C -0.250 4.250 25 C 0.381 3.619 26 C -0.195 4.195 27 O -0.410 6.410 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -8.618 23.230 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.290 3.710 14 O -0.378 6.378 15 C -0.050 4.050 16 O -0.149 6.149 17 C 0.195 3.805 18 C -0.295 4.295 19 C 0.184 3.816 20 F -0.100 7.100 21 C -0.267 4.267 22 C 0.194 3.806 23 F -0.091 7.091 24 C -0.253 4.253 25 C 0.255 3.745 26 C -0.252 4.252 27 O -0.282 6.282 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.308 -7.442 22.380 24.414 hybrid contribution 0.743 -0.798 -0.047 1.092 sum -5.564 -8.241 22.333 24.446 Atomic orbital electron populations 1.22254 0.96564 1.01637 1.02528 1.21489 0.93681 0.84096 1.02911 1.48203 1.64138 1.13314 1.07074 1.19333 0.96487 0.93743 0.77438 1.21457 0.96859 1.32096 1.06317 0.92348 1.24930 0.97917 0.94839 0.96370 1.69939 1.35630 1.33336 1.14335 0.86433 0.84552 0.78126 0.78252 1.19802 1.20958 1.20803 1.19532 0.80228 0.87267 0.84007 1.90789 1.43440 1.17179 1.86344 1.23046 1.02184 0.93584 0.86198 1.86459 1.78804 1.39383 1.10296 1.18631 0.87014 0.89494 0.85365 1.21251 1.13186 0.97119 0.97955 1.17072 0.92797 0.79139 0.92620 1.91574 1.85724 1.36432 1.96230 1.20768 1.11561 0.94053 1.00325 1.16918 0.93968 0.87885 0.81780 1.91563 1.90524 1.74426 1.52579 1.19967 1.15926 0.99344 0.90077 1.21950 0.75410 0.85766 0.91336 1.22385 1.04051 1.01044 0.97765 1.90799 1.38072 1.72575 1.26757 0.91905 0.93202 0.91667 0.89360 0.92039 0.94627 0.93684 0.92709 0.88835 0.88936 0.82678 0.82662 0.89694 0.88958 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.50 5.93 -4.04 -0.02 1.47 16 3 N -0.59 -12.12 2.46 -175.06 -0.43 -12.55 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.61 7.75 -10.98 -0.09 10.52 16 14 O -0.50 -13.43 16.08 -14.35 -0.23 -13.66 16 15 C 0.03 0.42 3.77 36.00 0.14 0.55 16 16 O -0.24 -4.06 7.74 -48.80 -0.38 -4.44 16 17 C 0.25 3.18 6.70 -38.61 -0.26 2.92 16 18 C -0.28 -2.71 9.00 -39.42 -0.35 -3.06 16 19 C 0.20 1.77 7.30 -39.30 -0.29 1.49 16 20 F -0.12 -1.04 17.26 2.25 0.04 -1.00 16 21 C -0.25 -1.94 9.98 -39.50 -0.39 -2.33 16 22 C 0.21 1.96 7.26 -38.90 -0.28 1.67 16 23 F -0.11 -0.90 13.75 2.25 0.03 -0.87 16 24 C -0.25 -3.03 5.89 -104.89 -0.62 -3.65 16 25 C 0.38 5.24 7.20 -31.00 -0.22 5.01 16 26 C -0.20 -1.83 8.51 36.00 0.31 -1.53 16 27 O -0.41 -7.83 15.89 -16.44 -0.26 -8.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.56 7.22 -51.92 -0.37 0.19 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 1.11 6.91 -51.93 -0.36 0.75 16 37 H 0.09 1.04 6.71 -51.93 -0.35 0.69 16 38 H 0.16 1.23 6.29 -52.49 -0.33 0.90 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.09 0.70 7.41 -51.93 -0.38 0.31 16 42 H 0.09 0.71 7.40 -51.93 -0.38 0.33 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -36.04 367.37 -7.10 -43.14 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.97 Total: -3.41 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.15 Total: 4.21 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.31 Total: -38.31 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.87 Total: -26.19 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.07 Total: -1.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.04 -7.10 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155785629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.226 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds