Wall clock time and date at job start Tue Mar 31 2020 23:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34225 * 117.00161 * 2 1 4 4 O 1.20828 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00145 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47329 * 180.02562 * 5 3 2 7 7 C 1.33440 * 122.72178 * 125.00048 * 6 5 3 8 8 S 1.76172 * 108.06569 * 180.02562 * 7 6 5 9 9 C 1.70967 * 90.33885 * 359.97438 * 8 7 6 10 10 N 1.39000 * 124.94575 * 179.97438 * 9 8 7 11 11 C 1.34785 * 119.99602 * 0.02731 * 10 9 8 12 12 O 1.21278 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.46891 * 109.47203 * 179.97438 * 13 11 10 15 15 C 1.46900 * 110.99859 * 66.04864 * 14 13 11 16 16 C 1.46902 * 111.00371 * 190.00018 * 14 13 11 17 17 H 1.09000 * 109.47263 * 300.00454 * 16 14 13 18 18 C 1.53006 * 109.46626 * 60.00148 * 16 14 13 19 19 C 1.50697 * 109.47181 * 180.02562 * 16 14 13 20 20 H 1.07994 * 120.00496 * 0.02562 * 19 16 14 21 21 C 1.37887 * 119.99690 * 180.02562 * 19 16 14 22 22 N 1.31507 * 120.00093 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99676 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47515 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46678 * 119.99923 * 23 21 19 26 26 H 1.48493 * 109.47346 * 239.99833 * 23 21 19 27 27 N 1.29623 * 110.11217 * 0.24448 * 9 8 7 28 28 H 1.09007 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47420 * 300.00061 * 1 2 3 30 30 H 1.08999 * 109.47449 * 60.00427 * 1 2 3 31 31 H 1.09003 * 109.47233 * 59.99924 * 5 3 2 32 32 H 1.08998 * 109.47309 * 299.99651 * 5 3 2 33 33 H 1.08008 * 125.96308 * 359.96268 * 7 6 5 34 34 H 0.97000 * 120.00899 * 180.02562 * 10 9 8 35 35 H 1.09007 * 109.46876 * 60.00192 * 13 11 10 36 36 H 1.09002 * 109.47527 * 300.00305 * 13 11 10 37 37 H 1.09007 * 109.47437 * 183.95227 * 15 14 13 38 38 H 1.09004 * 109.47505 * 303.95311 * 15 14 13 39 39 H 1.08998 * 109.47445 * 63.95753 * 15 14 13 40 40 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 41 41 H 1.08993 * 109.46955 * 300.00347 * 18 16 14 42 42 H 1.09000 * 109.47050 * 60.00176 * 18 16 14 43 43 H 0.96999 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9936 2.7199 0.0002 7 6 4.8160 3.2285 0.9198 8 16 5.0534 4.9358 0.5561 9 6 4.0222 4.8006 -0.8009 10 7 3.6992 5.8425 -1.6624 11 6 4.2124 7.0715 -1.4556 12 8 4.9564 7.2682 -0.5182 13 6 3.8627 8.2010 -2.3899 14 7 4.5430 9.4271 -1.9522 15 6 5.9999 9.2984 -2.0895 16 6 4.0461 10.5968 -2.6891 17 1 4.2269 10.4583 -3.7550 18 6 2.5443 10.7544 -2.4427 19 6 4.7660 11.8326 -2.2143 20 1 5.5178 11.7568 -1.4427 21 6 4.4649 13.0603 -2.7652 22 7 3.5498 13.1526 -3.7051 23 14 5.3578 14.5921 -2.1772 24 1 6.3343 14.2214 -1.1216 25 1 6.0757 15.2151 -3.3182 26 1 4.3738 15.5573 -1.6249 27 7 3.5809 3.5863 -0.9061 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 5.2580 2.6879 1.7438 34 1 3.1044 5.6852 -2.4123 35 1 2.7844 8.3607 -2.3793 36 1 4.1826 7.9487 -3.4009 37 1 6.4826 10.1919 -1.6935 38 1 6.3415 8.4247 -1.5344 39 1 6.2568 9.1831 -3.1425 40 1 2.1756 11.6225 -2.9891 41 1 2.0240 9.8604 -2.7863 42 1 2.3635 10.8928 -1.3767 43 1 3.3377 14.0162 -4.0924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156065733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:32 Heat of formation + Delta-G solvation = -47.374056 kcal Electronic energy + Delta-G solvation = -26733.915974 eV Core-core repulsion = 22714.560193 eV Total energy + Delta-G solvation = -4019.355781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89632 -40.36481 -39.38307 -36.81249 -36.58232 -35.00490 -32.82875 -32.06654 -29.50033 -29.07656 -28.16679 -27.38424 -25.24561 -24.35397 -23.37856 -21.74736 -21.44989 -20.01819 -19.24923 -18.26317 -17.86053 -17.10908 -16.97498 -16.78353 -16.29248 -16.19362 -15.84523 -15.05443 -14.55911 -14.51177 -14.08483 -14.01600 -13.81447 -13.74517 -13.46682 -13.19609 -12.70167 -12.61165 -12.43246 -12.33406 -11.82972 -11.56339 -11.24248 -11.12928 -11.06302 -10.98514 -10.75973 -10.68249 -10.64222 -10.23506 -10.19465 -10.01146 -9.74163 -9.57801 -9.19063 -8.95366 -8.47633 -8.31591 -7.32053 -6.06519 -4.10430 0.70243 1.14318 1.80047 2.02176 2.16020 2.52342 2.59511 3.02452 3.28310 3.36431 3.41647 4.09522 4.37859 4.62741 4.70001 4.80671 4.81729 4.88367 4.91574 4.99319 5.14310 5.22382 5.26423 5.41076 5.56813 5.63250 5.70507 6.07006 6.15579 6.23569 6.35105 6.70450 6.79694 6.87557 6.94418 7.04981 7.38947 7.54879 7.57577 7.72895 7.78158 7.91577 8.09350 8.21810 8.47514 8.95917 9.54714 11.00622 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.002106 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.263382 B =13294.006877 C =14050.518411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.483 6.483 5 C -0.032 4.032 6 C 0.094 3.906 7 C -0.320 4.320 8 S 0.256 5.744 9 C 0.256 3.744 10 N -0.630 5.630 11 C 0.514 3.486 12 O -0.480 6.480 13 C 0.040 3.960 14 N -0.519 5.519 15 C 0.032 3.968 16 C 0.213 3.787 17 H 0.002 0.998 18 C -0.137 4.137 19 C -0.502 4.502 20 H 0.066 0.934 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 N -0.502 5.502 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.175 0.825 34 H 0.423 0.577 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.009 0.991 40 H 0.089 0.911 41 H 0.007 0.993 42 H 0.037 0.963 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -26.180 5.643 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.368 6.368 5 C -0.072 4.072 6 C -0.039 4.039 7 C -0.461 4.461 8 S 0.507 5.493 9 C -0.112 4.112 10 N -0.281 5.281 11 C 0.301 3.699 12 O -0.351 6.351 13 C -0.092 4.092 14 N -0.245 5.245 15 C -0.116 4.116 16 C 0.107 3.893 17 H 0.020 0.980 18 C -0.195 4.195 19 C -0.540 4.540 20 H 0.085 0.915 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.210 1.210 27 N -0.224 5.224 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.192 0.808 34 H 0.261 0.739 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.027 0.973 40 H 0.107 0.893 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.865 -24.627 6.656 25.525 hybrid contribution -0.414 -0.265 -1.124 1.227 sum -1.279 -24.892 5.532 25.531 Atomic orbital electron populations 1.23239 0.76259 1.03528 1.02659 1.86473 1.23502 1.33583 1.84671 1.23476 0.91772 0.81458 0.73270 1.90735 1.66716 1.36118 1.43184 1.19781 0.88346 0.92350 1.06693 1.18886 0.97798 0.94750 0.92501 1.27224 1.10068 1.01783 1.07064 1.85134 1.42232 1.02160 1.19777 1.23414 0.99974 0.90388 0.97427 1.43185 1.48982 1.06663 1.29297 1.21719 0.79293 0.82060 0.86829 1.90591 1.33929 1.80536 1.30085 1.21982 1.02904 0.89872 0.94434 1.61933 1.04463 1.00444 1.57643 1.22371 0.88650 1.02680 0.97930 1.19341 0.92741 0.86131 0.91049 0.98034 1.21910 0.96976 0.99954 1.00645 1.21157 1.21027 0.90795 1.21063 0.91546 1.24934 0.95316 0.99053 0.95003 1.69885 1.31856 1.24737 1.26820 0.86424 0.79592 0.82757 0.78565 1.19652 1.21153 1.21013 1.66022 1.27263 0.99694 1.29470 0.88154 0.91970 0.91852 0.86157 0.86049 0.80766 0.73900 0.86895 0.92063 0.90241 0.92202 0.97289 0.89291 0.97393 0.94358 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.55 101.05 1.07 1.32 16 2 O -0.36 -3.28 10.56 -39.24 -0.41 -3.70 16 3 C 0.46 4.94 7.92 36.01 0.29 5.23 16 4 O -0.48 -7.11 15.18 -18.75 -0.28 -7.39 16 5 C -0.03 -0.25 6.31 -29.03 -0.18 -0.44 16 6 C 0.09 1.10 5.64 -84.20 -0.47 0.62 16 7 C -0.32 -3.38 11.05 29.05 0.32 -3.06 16 8 S 0.26 3.38 20.22 -107.50 -2.17 1.20 16 9 C 0.26 3.67 8.19 -87.35 -0.72 2.95 16 10 N -0.63 -8.48 5.40 -13.07 -0.07 -8.55 16 11 C 0.51 8.09 7.49 -10.98 -0.08 8.00 16 12 O -0.48 -8.72 11.80 5.56 0.07 -8.65 16 13 C 0.04 0.66 5.26 -4.98 -0.03 0.63 16 14 N -0.52 -10.95 4.36 -237.73 -1.04 -11.99 16 15 C 0.03 0.64 8.88 60.06 0.53 1.17 16 16 C 0.21 5.16 2.06 -68.86 -0.14 5.02 16 17 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 18 C -0.14 -3.19 8.77 37.16 0.33 -2.86 16 19 C -0.50 -13.47 7.93 -34.44 -0.27 -13.74 16 20 H 0.07 1.81 6.39 -52.49 -0.34 1.47 16 21 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 22 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 N -0.50 -7.10 9.72 -11.28 -0.11 -7.21 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.12 0.56 8.03 -51.93 -0.42 0.15 16 33 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.42 4.62 8.82 -40.82 -0.36 4.26 16 35 H 0.11 1.77 5.83 -51.92 -0.30 1.47 16 36 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.08 1.71 6.23 -51.93 -0.32 1.38 16 38 H 0.06 1.13 5.82 -51.93 -0.30 0.82 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 41 H 0.01 0.15 6.20 -51.93 -0.32 -0.18 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -33.64 369.63 -7.92 -41.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.62 Total: 0.93 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.54 Total: 6.33 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.59 Total: -51.97 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.63 Total: -19.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.17 Total: 1.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.64 -7.92 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156065733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.808 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds