Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34236 * 116.99767 * 2 1 4 4 O 1.20822 * 119.99875 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99686 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.47220 * 179.97438 * 5 3 2 7 7 C 1.33441 * 122.71495 * 124.99540 * 6 5 3 8 8 S 1.76171 * 108.06190 * 180.02562 * 7 6 5 9 9 C 1.70975 * 90.34182 * 0.02562 * 8 7 6 10 10 N 1.39001 * 124.94544 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99804 * 0.30058 * 10 9 8 12 12 O 1.21283 * 120.00463 * 359.71949 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72609 * 11 10 9 14 14 N 1.46899 * 109.46987 * 179.97438 * 13 11 10 15 15 C 1.46905 * 111.00532 * 66.04197 * 14 13 11 16 16 C 1.46903 * 111.00299 * 190.00048 * 14 13 11 17 17 H 1.08996 * 109.47138 * 54.99491 * 16 14 13 18 18 C 1.53006 * 109.46521 * 294.99808 * 16 14 13 19 19 C 1.50696 * 109.47401 * 174.99961 * 16 14 13 20 20 H 1.08002 * 119.99813 * 359.97438 * 19 16 14 21 21 C 1.37875 * 120.00096 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99765 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 120.00330 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47509 * 89.99383 * 23 21 19 25 25 H 1.48502 * 109.47487 * 210.00182 * 23 21 19 26 26 H 1.48511 * 109.46848 * 329.99478 * 23 21 19 27 27 N 1.29624 * 110.10747 * 0.26127 * 9 8 7 28 28 H 1.09000 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47388 * 300.00116 * 1 2 3 30 30 H 1.09002 * 109.46983 * 60.00241 * 1 2 3 31 31 H 1.09002 * 109.47364 * 59.99862 * 5 3 2 32 32 H 1.09003 * 109.47369 * 299.99922 * 5 3 2 33 33 H 1.07997 * 125.97008 * 0.02562 * 7 6 5 34 34 H 0.97001 * 119.99650 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 36 36 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 37 37 H 1.08998 * 109.46586 * 60.00128 * 15 14 13 38 38 H 1.08997 * 109.47601 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.46729 * 300.00335 * 15 14 13 40 40 H 1.08998 * 109.46369 * 179.97438 * 18 16 14 41 41 H 1.08996 * 109.47156 * 299.99672 * 18 16 14 42 42 H 1.08994 * 109.47400 * 59.99713 * 18 16 14 43 43 H 0.97003 * 119.99418 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9936 2.7201 -0.0002 7 6 4.8152 3.2297 0.9196 8 16 5.0530 4.9365 0.5539 9 6 4.0218 4.8000 -0.8030 10 7 3.6991 5.8410 -1.6657 11 6 4.2169 7.0688 -1.4635 12 8 4.9604 7.2666 -0.5260 13 6 3.8719 8.1959 -2.4024 14 7 4.5567 9.4212 -1.9692 15 6 6.0133 9.2864 -2.1051 16 6 4.0647 10.5898 -2.7109 17 1 2.9815 10.6554 -2.6086 18 6 4.4294 10.4457 -4.1898 19 6 4.6982 11.8398 -2.1568 20 1 5.3963 11.7729 -1.3354 21 6 4.3859 13.0690 -2.6977 22 7 3.5354 13.1505 -3.6975 23 14 5.1707 14.6186 -2.0104 24 1 6.4351 14.8975 -2.7374 25 1 4.2392 15.7625 -2.1804 26 1 5.4616 14.4276 -0.5666 27 7 3.5800 3.5858 -0.9066 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 5.2572 2.6900 1.7441 34 1 3.1044 5.6828 -2.4155 35 1 4.1915 7.9384 -3.4122 36 1 2.7944 8.3598 -2.3931 37 1 6.2646 9.0959 -3.1485 38 1 6.4956 10.2072 -1.7772 39 1 6.3602 8.4560 -1.4903 40 1 4.0639 11.3126 -4.7402 41 1 5.5126 10.3801 -4.2922 42 1 3.9712 9.5416 -4.5906 43 1 3.3160 14.0153 -4.0782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156065856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = -48.145001 kcal Electronic energy + Delta-G solvation = -26735.020149 eV Core-core repulsion = 22715.630938 eV Total energy + Delta-G solvation = -4019.389212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89641 -40.36747 -39.38751 -36.96861 -36.61560 -35.00867 -32.78458 -32.06661 -29.54418 -28.86412 -27.69338 -27.37477 -25.24888 -24.91134 -23.59671 -21.74728 -21.44391 -19.97789 -19.13298 -18.26490 -17.86257 -17.07728 -16.96885 -16.78720 -16.23619 -16.09395 -15.84829 -14.98461 -14.60431 -14.52373 -14.21342 -14.06509 -13.86918 -13.65274 -13.28328 -13.17084 -12.84698 -12.65009 -12.48911 -12.33449 -11.68677 -11.53826 -11.19513 -11.15420 -11.06329 -10.93496 -10.79263 -10.76909 -10.64479 -10.52781 -10.15298 -10.02878 -9.74179 -9.60694 -9.19171 -8.94378 -8.43424 -8.31744 -7.29347 -6.05678 -4.08946 0.70201 1.14295 1.80026 2.02172 2.15958 2.52559 2.59234 3.02401 3.29978 3.36755 3.41800 4.09444 4.38972 4.62740 4.70048 4.80657 4.81595 4.88328 4.94377 4.99271 5.14325 5.22355 5.27067 5.41046 5.57132 5.63660 5.70718 6.07090 6.15790 6.25482 6.34311 6.60066 6.73287 6.84951 6.91953 6.99351 7.34286 7.54844 7.62637 7.72608 7.76584 7.89902 8.02522 8.27655 8.48060 8.96706 9.56119 11.01654 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.002085 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.198289 B =13428.194069 C =14018.891397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.483 6.483 5 C -0.032 4.032 6 C 0.094 3.906 7 C -0.320 4.320 8 S 0.256 5.744 9 C 0.256 3.744 10 N -0.630 5.630 11 C 0.513 3.487 12 O -0.480 6.480 13 C 0.044 3.956 14 N -0.517 5.517 15 C 0.028 3.972 16 C 0.211 3.789 17 H 0.042 0.958 18 C -0.175 4.175 19 C -0.499 4.499 20 H 0.065 0.935 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.273 1.273 27 N -0.502 5.502 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.175 0.825 34 H 0.423 0.577 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.013 0.987 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.007 0.993 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -26.271 5.280 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.367 6.367 5 C -0.072 4.072 6 C -0.039 4.039 7 C -0.461 4.461 8 S 0.507 5.493 9 C -0.112 4.112 10 N -0.281 5.281 11 C 0.300 3.700 12 O -0.351 6.351 13 C -0.088 4.088 14 N -0.241 5.241 15 C -0.121 4.121 16 C 0.106 3.894 17 H 0.060 0.940 18 C -0.234 4.234 19 C -0.538 4.538 20 H 0.083 0.917 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.198 1.198 27 N -0.224 5.224 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.192 0.808 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.026 0.974 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.459 -24.717 6.308 25.513 hybrid contribution -0.433 -0.262 -1.141 1.249 sum -0.892 -24.979 5.167 25.524 Atomic orbital electron populations 1.23241 0.76259 1.03527 1.02658 1.86478 1.23503 1.33580 1.84678 1.23476 0.91770 0.81457 0.73268 1.90733 1.66711 1.36122 1.43180 1.19782 0.88348 0.92355 1.06693 1.18885 0.97803 0.94751 0.92501 1.27223 1.10089 1.01779 1.07040 1.85136 1.42246 1.02210 1.19717 1.23416 0.99962 0.90398 0.97432 1.43182 1.48848 1.06777 1.29305 1.21737 0.79304 0.82069 0.86845 1.90593 1.33995 1.80439 1.30107 1.21891 1.02127 0.90109 0.94630 1.62155 1.04590 1.00506 1.56868 1.22407 0.88826 1.02776 0.98046 1.19398 0.96203 0.86090 0.87733 0.94026 1.22446 0.99179 1.00203 1.01566 1.21079 1.25913 0.89897 1.16865 0.91679 1.24924 0.95256 0.99068 0.95078 1.69877 1.34161 1.24760 1.24616 0.86483 0.78900 0.82435 0.79534 1.20805 1.21300 1.19765 1.66021 1.27249 0.99712 1.29465 0.88156 0.91969 0.91852 0.86165 0.86039 0.80768 0.73897 0.91651 0.87578 0.96855 0.90353 0.92189 0.89065 0.94847 0.97432 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.28 10.57 -39.27 -0.41 -3.70 16 3 C 0.46 4.94 7.92 36.00 0.29 5.22 16 4 O -0.48 -7.10 15.18 -18.75 -0.28 -7.38 16 5 C -0.03 -0.26 6.30 -29.04 -0.18 -0.44 16 6 C 0.09 1.10 5.64 -84.20 -0.48 0.62 16 7 C -0.32 -3.37 11.05 29.05 0.32 -3.05 16 8 S 0.26 3.37 20.22 -107.50 -2.17 1.19 16 9 C 0.26 3.65 8.19 -87.35 -0.72 2.94 16 10 N -0.63 -8.42 5.40 -13.07 -0.07 -8.49 16 11 C 0.51 8.02 7.52 -10.99 -0.08 7.93 16 12 O -0.48 -8.68 11.78 5.55 0.07 -8.61 16 13 C 0.04 0.72 4.89 -4.98 -0.02 0.70 16 14 N -0.52 -10.79 4.48 -237.73 -1.06 -11.86 16 15 C 0.03 0.55 8.44 60.07 0.51 1.05 16 16 C 0.21 5.07 2.34 -68.86 -0.16 4.91 16 17 H 0.04 1.08 8.03 -51.93 -0.42 0.67 16 18 C -0.17 -3.97 8.28 37.16 0.31 -3.66 16 19 C -0.50 -13.34 7.88 -34.44 -0.27 -13.61 16 20 H 0.07 1.77 6.77 -52.49 -0.36 1.41 16 21 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 22 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 23 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 27 N -0.50 -7.09 9.71 -11.28 -0.11 -7.20 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.12 0.56 8.03 -51.93 -0.42 0.15 16 33 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.42 4.58 8.82 -40.82 -0.36 4.22 16 35 H 0.07 0.97 6.94 -51.93 -0.36 0.61 16 36 H 0.11 1.61 8.00 -51.93 -0.42 1.19 16 37 H 0.01 0.25 6.51 -51.93 -0.34 -0.09 16 38 H 0.08 1.68 6.42 -51.93 -0.33 1.34 16 39 H 0.06 1.13 5.88 -51.93 -0.31 0.83 16 40 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 41 H 0.03 0.74 6.47 -51.93 -0.34 0.41 16 42 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -33.42 367.44 -7.98 -41.40 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.55 Total: 1.75 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 0.48 Total: 5.41 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.62 Total: -51.72 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.63 Total: -19.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.17 Total: 1.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.42 -7.98 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156065856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.744 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds