Wall clock time and date at job start Tue Mar 31 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35539 * 125.67261 * 2 1 4 4 C 1.35456 * 108.86777 * 180.11307 * 3 2 1 5 5 S 1.76199 * 126.06828 * 179.89193 * 4 3 2 6 6 O 1.42100 * 106.40499 * 156.17327 * 5 4 3 7 7 O 1.42103 * 106.40085 * 23.25756 * 5 4 3 8 8 N 1.65601 * 107.21804 * 269.71683 * 5 4 3 9 9 C 1.36936 * 119.99568 * 269.99361 * 8 5 4 10 10 H 1.08007 * 119.99415 * 130.15633 * 9 8 5 11 11 C 1.38806 * 120.00717 * 310.15940 * 9 8 5 12 12 N 1.31627 * 119.99788 * 334.02836 * 11 9 8 13 13 Si 1.86795 * 120.00305 * 154.02733 * 11 9 8 14 14 H 1.48502 * 109.47405 * 89.99965 * 13 11 9 15 15 H 1.48500 * 109.47290 * 210.00177 * 13 11 9 16 16 H 1.48502 * 109.47312 * 330.00142 * 13 11 9 17 17 C 1.46494 * 120.00092 * 90.00277 * 8 5 4 18 18 C 1.54264 * 110.03781 * 120.88275 * 17 8 5 19 19 C 1.54966 * 104.15992 * 95.74827 * 18 17 8 20 20 C 1.54885 * 102.77679 * 37.89532 * 19 18 17 21 21 C 1.53886 * 110.02849 * 238.09918 * 17 8 5 22 22 C 1.39837 * 107.86596 * 359.62610 * 4 3 2 23 23 C 1.37651 * 125.68324 * 179.69719 * 2 1 3 24 24 C 1.46680 * 126.22688 * 0.02952 * 23 2 1 25 25 N 1.34785 * 119.99561 * 184.86649 * 24 23 2 26 26 O 1.21692 * 120.00415 * 4.86910 * 24 23 2 27 27 H 1.09000 * 109.46845 * 269.05688 * 1 2 3 28 28 H 1.08999 * 109.47471 * 29.05562 * 1 2 3 29 29 H 1.09002 * 109.47026 * 149.06271 * 1 2 3 30 30 H 1.07999 * 125.56779 * 359.97211 * 3 2 1 31 31 H 0.97000 * 119.99639 * 175.08987 * 12 11 9 32 32 H 1.08999 * 110.02006 * 359.48625 * 17 8 5 33 33 H 1.08999 * 110.48649 * 214.39907 * 18 17 8 34 34 H 1.08999 * 110.48262 * 337.04257 * 18 17 8 35 35 H 1.08994 * 110.72215 * 279.57741 * 19 18 17 36 36 H 1.09001 * 110.92186 * 156.30026 * 19 18 17 37 37 H 1.09005 * 110.48495 * 203.40851 * 20 19 18 38 38 H 1.08999 * 110.60598 * 80.81343 * 20 19 18 39 39 H 1.09001 * 110.02777 * 359.95135 * 21 17 8 40 40 H 1.08998 * 110.02929 * 121.38281 * 21 17 8 41 41 H 1.08006 * 126.45882 * 180.22339 * 22 4 3 42 42 H 0.96996 * 119.99813 * 5.19845 * 25 24 23 43 43 H 0.96992 * 119.99482 * 185.20492 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5521 0.7094 -0.0025 5 16 4.9569 1.7730 -0.0062 6 8 6.0307 1.0213 0.5426 7 8 4.5221 3.0141 0.5322 8 7 5.3491 2.0616 -1.5891 9 6 6.2271 1.2354 -2.2384 10 1 5.9708 0.8279 -3.2052 11 6 7.4465 0.9216 -1.6542 12 7 7.9939 1.7487 -0.7889 13 14 8.3107 -0.6745 -2.0959 14 1 9.2075 -0.4469 -3.2574 15 1 9.1118 -1.1411 -0.9359 16 1 7.2996 -1.7045 -2.4456 17 6 4.7568 3.2007 -2.2944 18 6 5.8671 4.1462 -2.7975 19 6 6.1018 3.7082 -4.2653 20 6 4.6708 3.3780 -4.7572 21 6 3.9965 2.7120 -3.5399 22 6 3.5780 -0.6887 0.0045 23 6 2.2679 -1.1181 0.0059 24 6 1.8125 -2.5123 0.0127 25 7 2.7088 -3.5135 0.1171 26 8 0.6254 -2.7652 -0.0760 27 1 -0.3633 -0.0169 1.0275 28 1 -0.3634 0.8983 -0.4991 29 1 -0.3633 -0.8815 -0.5283 30 1 1.9081 2.1237 -0.0004 31 1 8.8094 1.4979 -0.3273 32 1 4.0799 3.7393 -1.6313 33 1 5.5325 5.1828 -2.7577 34 1 6.7755 4.0147 -2.2095 35 1 6.7382 2.8243 -4.3070 36 1 6.5333 4.5208 -4.8498 37 1 4.7068 2.6863 -5.5989 38 1 4.1411 4.2890 -5.0356 39 1 4.0690 1.6274 -3.6198 40 1 2.9507 3.0135 -3.4810 41 1 4.4585 -1.3143 0.0080 42 1 3.6462 -3.3119 0.2634 43 1 2.4164 -4.4356 0.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159567827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:58 Heat of formation + Delta-G solvation = -60.595723 kcal Electronic energy + Delta-G solvation = -29434.647304 eV Core-core repulsion = 25414.718189 eV Total energy + Delta-G solvation = -4019.929115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11484 -38.68086 -37.83709 -35.52625 -34.07591 -33.98654 -33.65513 -32.45449 -31.21505 -29.08101 -27.85630 -26.95208 -26.43451 -24.01586 -23.03336 -20.91549 -19.96312 -19.58917 -19.28495 -18.65664 -18.14934 -16.67763 -16.38818 -15.74141 -15.71208 -15.47666 -15.07591 -14.69666 -14.42808 -14.24283 -14.16725 -13.92840 -13.73993 -13.25042 -12.89809 -12.73204 -12.35045 -12.24805 -12.05661 -11.76842 -11.54804 -11.21852 -10.92872 -10.72544 -10.43846 -10.40715 -10.35147 -10.29237 -10.17660 -10.12311 -9.98078 -9.77291 -9.75640 -9.72798 -9.55546 -8.68367 -8.58992 -8.09747 -7.56247 -6.41363 -4.03869 1.61274 2.07587 2.65546 2.85745 3.25853 3.32860 3.35787 3.47790 3.71711 4.23974 4.80320 4.86865 4.95972 5.02721 5.15451 5.23324 5.39870 5.41042 5.49605 5.57269 5.62072 5.64581 5.86675 6.07445 6.17199 6.27200 6.31470 6.38019 6.45973 6.54329 6.61062 6.64174 6.69648 6.74939 6.90250 6.96095 7.13138 7.16387 7.28522 7.32994 7.38476 7.52926 7.74377 8.22704 8.35591 9.03665 9.47460 10.64414 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.005360 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.384640 B = 5222.339837 C = 6152.408377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.412 5.412 3 C 0.115 3.885 4 C -0.727 4.727 5 S 2.594 3.406 6 O -0.950 6.950 7 O -1.020 7.020 8 N -0.811 5.811 9 C -0.277 4.277 10 H 0.079 0.921 11 C 0.068 3.932 12 N -0.783 5.783 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.156 3.844 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.039 4.039 23 C -0.087 4.087 24 C 0.602 3.398 25 N -0.844 5.844 26 O -0.563 6.563 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.277 0.723 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.152 0.848 42 H 0.407 0.593 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 -3.009 -3.073 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.084 5.084 3 C -0.026 4.026 4 C -0.811 4.811 5 S 2.691 3.309 6 O -0.939 6.939 7 O -1.009 7.009 8 N -0.636 5.636 9 C -0.422 4.422 10 H 0.096 0.904 11 C -0.150 4.150 12 N -0.419 5.419 13 Si 0.733 3.267 14 H -0.206 1.206 15 H -0.205 1.205 16 H -0.192 1.192 17 C 0.047 3.953 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.174 4.174 22 C -0.065 4.065 23 C -0.198 4.198 24 C 0.390 3.610 25 N -0.407 5.407 26 O -0.444 6.444 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.194 0.806 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.170 0.830 42 H 0.237 0.763 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.774 -2.669 -2.095 9.407 hybrid contribution 0.093 -1.504 -0.200 1.520 sum -8.681 -4.173 -2.295 9.901 Atomic orbital electron populations 1.22281 0.76582 1.05147 1.03752 1.44063 1.06532 1.05223 1.52627 1.21843 0.89192 0.91403 1.00116 1.32789 1.17135 1.10137 1.20992 1.08972 0.72556 0.72833 0.76503 1.93403 1.50056 1.72553 1.77873 1.93301 1.83828 1.44031 1.79775 1.52825 1.48827 1.30804 1.31109 1.18766 0.93210 1.25393 1.04853 0.90363 1.25540 0.95418 0.97543 0.96491 1.69906 1.17427 1.32619 1.21910 0.86281 0.79422 0.83126 0.77841 1.20596 1.20550 1.19176 1.21274 0.93921 0.87139 0.92921 1.22520 1.00406 0.96299 0.96402 1.22435 0.96183 1.00937 0.95715 1.22266 0.96946 0.99073 0.97316 1.22578 0.97627 1.01798 0.95348 1.20989 0.94166 0.93631 0.97726 1.19967 0.90829 0.87227 1.21811 1.16945 0.85190 0.84062 0.74832 1.43457 1.12004 1.08834 1.76440 1.90772 1.16355 1.85164 1.52135 0.90853 0.89851 0.87946 0.80577 0.91289 0.90848 0.93203 0.89375 0.90079 0.93513 0.92811 0.93009 0.90541 0.93340 0.83034 0.76297 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.60 59.85 0.63 1.42 16 2 N -0.41 -6.65 3.16 -120.23 -0.38 -7.03 16 3 C 0.11 2.01 11.12 -16.91 -0.19 1.82 16 4 C -0.73 -14.69 6.18 -39.98 -0.25 -14.93 16 5 S 2.59 61.65 5.60 -107.50 -0.60 61.05 16 6 O -0.95 -25.36 14.07 -57.17 -0.80 -26.17 16 7 O -1.02 -25.92 16.43 -57.17 -0.94 -26.86 16 8 N -0.81 -18.23 2.58 -52.34 -0.14 -18.36 16 9 C -0.28 -6.42 6.84 -15.06 -0.10 -6.52 16 10 H 0.08 1.74 7.18 -52.48 -0.38 1.36 16 11 C 0.07 1.65 3.96 -17.43 -0.07 1.58 16 12 N -0.78 -20.58 11.77 55.49 0.65 -19.92 16 13 Si 0.91 19.21 29.63 -169.99 -5.04 14.17 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 17 C 0.16 3.07 3.33 -66.81 -0.22 2.85 16 18 C -0.12 -2.22 6.12 -25.03 -0.15 -2.37 16 19 C -0.12 -1.94 6.56 -24.70 -0.16 -2.10 16 20 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 21 C -0.13 -2.26 6.24 -25.61 -0.16 -2.42 16 22 C -0.04 -0.72 10.14 -39.12 -0.40 -1.11 16 23 C -0.09 -1.49 6.89 -81.98 -0.56 -2.05 16 24 C 0.60 9.28 8.05 -12.85 -0.10 9.18 16 25 N -0.84 -9.49 8.85 30.26 0.27 -9.22 16 26 O -0.56 -9.76 15.51 5.20 0.08 -9.68 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.34 6.29 -51.93 -0.33 1.01 16 30 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 31 H 0.28 7.01 8.32 -40.82 -0.34 6.67 16 32 H 0.07 1.44 6.96 -51.93 -0.36 1.08 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.96 8.00 -51.93 -0.42 1.54 16 35 H 0.08 1.50 7.28 -51.93 -0.38 1.13 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.37 6.85 -51.93 -0.36 1.02 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.15 2.59 7.49 -52.48 -0.39 2.20 16 42 H 0.41 4.00 7.77 -40.82 -0.32 3.69 16 43 H 0.41 3.59 8.93 -40.82 -0.36 3.22 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -32.63 361.88 -9.15 -41.79 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.81 Total: 11.40 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.91 Total: -16.62 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.41 Total: -54.54 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -1.66 Total: -62.70 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.04 Total: 14.17 kcal Atomic # 16 Polarization: 61.65 SS G_CDS: -0.60 Total: 61.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.63 -9.15 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159567827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.809 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds