Wall clock time and date at job start Tue Mar 31 2020 23:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81400 * 109.46797 * 2 1 4 4 O 1.42104 * 110.54475 * 73.33942 * 3 2 1 5 5 O 1.42106 * 110.54295 * 296.58431 * 3 2 1 6 6 N 1.65598 * 104.44775 * 184.96354 * 3 2 1 7 7 C 1.39920 * 120.00049 * 298.84046 * 6 3 2 8 8 C 1.38875 * 120.00778 * 133.92444 * 7 6 3 9 9 C 1.38075 * 119.99648 * 180.02562 * 8 7 6 10 10 C 1.38844 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.40190 * 119.99297 * 180.02562 * 10 9 8 12 12 C 1.34782 * 120.00010 * 144.68278 * 11 10 9 13 13 O 1.21589 * 119.99950 * 4.67237 * 12 11 10 14 14 N 1.34773 * 119.99847 * 184.67543 * 12 11 10 15 15 C 1.46503 * 119.99942 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47039 * 34.99413 * 15 14 12 17 17 C 1.53004 * 109.46768 * 274.99961 * 15 14 12 18 18 C 1.50697 * 109.47176 * 155.00015 * 15 14 12 19 19 H 1.08000 * 120.00156 * 5.36673 * 18 15 14 20 20 C 1.37879 * 119.99600 * 185.36521 * 18 15 14 21 21 N 1.31521 * 119.99730 * 185.93155 * 20 18 15 22 22 Si 1.86797 * 120.00243 * 6.20759 * 20 18 15 23 23 H 1.48506 * 109.46953 * 269.72128 * 22 20 18 24 24 H 1.48496 * 109.47220 * 29.72203 * 22 20 18 25 25 H 1.48504 * 109.47187 * 149.72453 * 22 20 18 26 26 C 1.38839 * 120.01008 * 0.26893 * 10 9 8 27 27 C 1.38074 * 120.00369 * 359.45832 * 26 10 9 28 28 H 1.08998 * 109.47003 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.46699 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47136 * 299.99533 * 1 2 3 31 31 H 1.08993 * 109.47036 * 240.00324 * 2 1 3 32 32 H 1.08998 * 109.47003 * 119.99856 * 2 1 3 33 33 H 0.97004 * 119.99912 * 118.83529 * 6 3 2 34 34 H 1.08002 * 119.99959 * 359.97438 * 8 7 6 35 35 H 1.07992 * 119.99885 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00335 * 324.68679 * 11 10 9 37 37 H 0.97003 * 120.00399 * 0.02562 * 14 12 11 38 38 H 1.08996 * 109.47501 * 54.83181 * 17 15 14 39 39 H 1.09000 * 109.47263 * 174.83369 * 17 15 14 40 40 H 1.09004 * 109.47249 * 294.82917 * 17 15 14 41 41 H 0.96996 * 119.99872 * 355.23943 * 21 20 18 42 42 H 1.07994 * 119.99802 * 179.72868 * 26 10 9 43 43 H 1.07998 * 120.00115 * 180.24982 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.9412 2.3076 1.2748 5 8 1.7394 2.3789 -1.1900 6 7 3.7786 1.5674 -0.1387 7 6 4.5081 0.8943 0.8475 8 6 5.4742 -0.0348 0.4842 9 6 6.1936 -0.6992 1.4576 10 6 5.9514 -0.4381 2.7996 11 7 6.6822 -1.1125 3.7877 12 6 7.0206 -0.4770 4.9272 13 8 6.6204 0.6521 5.1355 14 7 7.8026 -1.0931 5.8356 15 6 8.1700 -0.4027 7.0744 16 1 7.3397 0.2232 7.4015 17 6 9.4004 0.4719 6.8250 18 6 8.4840 -1.4190 8.1418 19 1 8.5013 -2.4709 7.8976 20 6 8.7492 -1.0059 9.4303 21 7 9.1370 -1.8791 10.3341 22 14 8.5504 0.7926 9.8941 23 1 9.8339 1.5058 9.6724 24 1 7.4914 1.4065 9.0534 25 1 8.1678 0.8953 11.3254 26 6 4.9820 0.4870 3.1631 27 6 4.2664 1.1558 2.1899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.2359 1.9502 -0.9038 34 1 5.6623 -0.2381 -0.5597 35 1 6.9446 -1.4220 1.1751 36 1 6.9444 -2.0363 3.6515 37 1 8.1222 -1.9938 5.6693 38 1 9.2045 1.1456 5.9909 39 1 9.6190 1.0552 7.7196 40 1 10.2547 -0.1621 6.5871 41 1 9.1700 -2.8231 10.1136 42 1 4.7907 0.6867 4.2070 43 1 3.5151 1.8783 2.4727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160351822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:12 Heat of formation + Delta-G solvation = -70.908364 kcal Electronic energy + Delta-G solvation = -27060.877092 eV Core-core repulsion = 23040.500787 eV Total energy + Delta-G solvation = -4020.376305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46003 -39.01437 -37.47635 -36.38248 -36.06057 -34.87223 -33.63829 -33.55694 -32.40463 -31.05586 -29.85196 -27.75703 -24.86950 -24.54155 -23.26245 -22.78370 -21.09494 -19.97090 -19.71714 -18.65996 -18.12627 -18.04521 -17.53618 -16.99102 -16.74621 -16.03837 -15.31466 -15.02777 -14.82198 -14.62831 -14.23059 -14.00636 -13.74660 -13.53224 -13.45002 -13.26214 -13.06022 -12.95633 -12.67258 -12.49980 -12.40077 -12.23744 -12.14637 -12.03834 -11.80235 -11.53695 -11.44557 -11.02309 -10.89875 -10.56277 -10.13766 -9.86763 -9.81710 -9.56984 -9.04518 -8.91860 -8.58643 -8.34346 -7.84275 -6.59591 -4.27937 -0.22459 1.14463 1.28016 2.22802 2.96973 3.30871 3.34647 3.40314 3.44991 3.58301 3.77189 3.80633 4.11869 4.34782 4.38661 4.67763 4.69913 4.77347 4.82274 4.87860 5.09678 5.18053 5.23299 5.26370 5.41124 5.44725 5.61617 5.94039 6.05810 6.23779 6.28423 6.34589 6.41825 6.54494 6.58833 6.67349 6.80377 7.02940 7.06179 7.30314 7.39816 7.69324 8.19007 8.52475 8.67811 9.02075 9.42934 10.81302 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.002210 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.443822 B =12665.971587 C =12968.187626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.627 4.627 3 S 2.605 3.395 4 O -0.945 6.945 5 O -0.957 6.957 6 N -1.056 6.056 7 C 0.104 3.896 8 C -0.110 4.110 9 C -0.139 4.139 10 C 0.175 3.825 11 N -0.696 5.696 12 C 0.693 3.307 13 O -0.581 6.581 14 N -0.711 5.711 15 C 0.251 3.749 16 H 0.050 0.950 17 C -0.160 4.160 18 C -0.610 4.610 19 H 0.062 0.938 20 C 0.036 3.964 21 N -0.904 5.904 22 Si 1.050 2.950 23 H -0.281 1.281 24 H -0.273 1.273 25 H -0.287 1.287 26 C -0.099 4.099 27 C -0.130 4.130 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.423 0.577 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.404 0.596 37 H 0.391 0.609 38 H 0.034 0.966 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.268 0.732 42 H 0.151 0.849 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -0.060 -24.826 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.757 4.757 3 S 2.699 3.301 4 O -0.935 6.935 5 O -0.947 6.947 6 N -0.807 5.807 7 C 0.008 3.992 8 C -0.132 4.132 9 C -0.161 4.161 10 C 0.078 3.922 11 N -0.344 5.344 12 C 0.393 3.607 13 O -0.459 6.459 14 N -0.362 5.362 15 C 0.148 3.852 16 H 0.068 0.932 17 C -0.218 4.218 18 C -0.648 4.648 19 H 0.080 0.920 20 C -0.170 4.170 21 N -0.538 5.538 22 Si 0.879 3.121 23 H -0.208 1.208 24 H -0.198 1.198 25 H -0.214 1.214 26 C -0.120 4.120 27 C -0.151 4.151 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.260 0.740 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.239 0.761 37 H 0.223 0.777 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.169 0.831 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.909 2.806 -23.076 26.590 hybrid contribution 0.768 -2.741 -1.843 3.391 sum -12.141 0.065 -24.920 27.720 Atomic orbital electron populations 1.21517 0.90237 1.05278 1.03552 1.30423 1.07323 1.25783 1.12123 1.05383 0.72638 0.77508 0.74548 1.93595 1.84072 1.73510 1.42274 1.93609 1.80858 1.71808 1.48414 1.53242 1.25789 1.69052 1.32598 1.17357 0.98233 0.96020 0.87560 1.20812 0.97253 0.95746 0.99399 1.20746 1.01547 1.03059 0.90707 1.17686 0.91619 0.95442 0.87427 1.42867 1.58196 1.15680 1.17622 1.16169 0.79985 0.84751 0.79779 1.90884 1.59369 1.18052 1.77596 1.45577 1.51468 1.18803 1.20376 1.19160 0.93271 0.92739 0.80064 0.93213 1.22423 1.00307 0.99327 0.99765 1.22146 1.54286 0.93679 0.94680 0.92008 1.25711 0.92370 1.06613 0.92295 1.70842 1.42257 1.03653 1.37012 0.83922 0.77507 0.74532 0.76153 1.20773 1.19837 1.21370 1.21386 0.93032 0.96170 1.01455 1.21837 1.01937 1.00665 0.90710 0.90854 0.89798 0.90841 0.84846 0.84547 0.74023 0.85316 0.85290 0.76062 0.77666 0.94718 0.93037 0.93185 0.92162 0.83129 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.63 -3.52 6.65 37.16 0.25 -3.28 16 3 S 2.61 22.47 5.35 -107.50 -0.58 21.89 16 4 O -0.94 -11.46 15.18 -57.54 -0.87 -12.33 16 5 O -0.96 -10.56 18.08 -57.54 -1.04 -11.60 16 6 N -1.06 -8.32 5.68 32.45 0.18 -8.13 16 7 C 0.10 1.03 6.03 -83.69 -0.50 0.53 16 8 C -0.11 -0.94 9.96 -39.41 -0.39 -1.34 16 9 C -0.14 -1.36 9.96 -39.42 -0.39 -1.75 16 10 C 0.18 2.28 6.30 -83.59 -0.53 1.76 16 11 N -0.70 -9.42 5.35 -14.17 -0.08 -9.49 16 12 C 0.69 12.80 8.37 -86.92 -0.73 12.08 16 13 O -0.58 -12.80 13.47 5.29 0.07 -12.73 16 14 N -0.71 -13.71 5.07 -59.81 -0.30 -14.02 16 15 C 0.25 5.89 2.14 -69.08 -0.15 5.74 16 16 H 0.05 1.29 6.05 -51.93 -0.31 0.97 16 17 C -0.16 -3.52 9.08 37.16 0.34 -3.18 16 18 C -0.61 -16.12 9.09 -34.44 -0.31 -16.43 16 19 H 0.06 1.70 7.95 -52.49 -0.42 1.28 16 20 C 0.04 1.00 5.43 -17.82 -0.10 0.90 16 21 N -0.90 -26.72 13.70 55.43 0.76 -25.96 16 22 Si 1.05 25.16 25.34 -169.99 -4.31 20.85 16 23 H -0.28 -6.38 6.81 56.52 0.38 -6.00 16 24 H -0.27 -6.34 6.35 56.52 0.36 -5.98 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.10 -1.43 8.69 -39.42 -0.34 -1.78 16 27 C -0.13 -1.64 9.23 -39.40 -0.36 -2.00 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.14 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.42 2.46 8.92 -34.47 -0.31 2.15 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.40 4.04 8.84 -40.82 -0.36 3.68 16 37 H 0.39 6.50 8.54 -40.82 -0.35 6.15 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.15 4.48 -51.93 -0.23 0.91 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.27 7.82 8.72 -40.82 -0.36 7.47 16 42 H 0.15 2.55 6.25 -52.49 -0.33 2.22 16 43 H 0.16 2.07 5.63 -52.49 -0.30 1.77 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -35.96 366.80 -9.11 -45.07 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.62 Total: 10.08 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.85 Total: -9.16 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.56 Total: -57.60 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.84 Total: -36.66 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.31 Total: 20.85 kcal Atomic # 16 Polarization: 22.47 SS G_CDS: -0.58 Total: 21.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.96 -9.11 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160351822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.838 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds