Wall clock time and date at job start Tue Mar 31 2020 23:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00302 * 2 1 3 5 5 H 1.08000 * 119.99681 * 120.00059 * 4 2 1 6 6 C 1.37878 * 120.00074 * 299.99776 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47236 * 270.00351 * 8 6 4 10 10 H 1.48501 * 109.47199 * 30.00080 * 8 6 4 11 11 H 1.48496 * 109.47219 * 149.99938 * 8 6 4 12 12 N 1.46497 * 109.46959 * 240.00562 * 2 1 3 13 13 C 1.34778 * 120.00145 * 85.00123 * 12 2 1 14 14 O 1.21582 * 120.00043 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99698 * 175.37648 * 15 13 12 17 17 C 1.38871 * 120.07215 * 214.81111 * 16 15 13 18 18 C 1.38114 * 119.93178 * 179.77118 * 17 16 15 19 19 C 1.38283 * 120.07106 * 0.50553 * 18 17 16 20 20 C 1.50692 * 119.92958 * 179.72082 * 19 18 17 21 21 N 1.46492 * 109.47611 * 270.02521 * 20 19 18 22 22 S 1.65599 * 120.00235 * 165.00173 * 21 20 19 23 23 C 1.81397 * 104.44810 * 65.00304 * 22 21 20 24 24 O 1.42097 * 104.27641 * 181.07289 * 22 21 20 25 25 O 1.42100 * 104.27749 * 308.93017 * 22 21 20 26 26 C 1.38285 * 120.13764 * 359.75208 * 19 18 17 27 27 C 1.38116 * 120.07111 * 359.97438 * 26 19 18 28 28 H 1.09004 * 109.47070 * 59.99335 * 1 2 3 29 29 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47011 * 299.99836 * 1 2 3 31 31 H 0.96997 * 120.00226 * 179.97438 * 7 6 4 32 32 H 0.96998 * 120.00320 * 264.99560 * 12 2 1 33 33 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 34 34 H 1.07997 * 120.03049 * 0.02562 * 17 16 15 35 35 H 1.07999 * 119.96656 * 180.26150 * 18 17 16 36 36 H 1.08998 * 109.47337 * 30.03491 * 20 19 18 37 37 H 1.09012 * 109.46813 * 150.02378 * 20 19 18 38 38 H 0.97003 * 119.99678 * 345.00190 * 21 20 19 39 39 H 1.08994 * 109.47602 * 60.00039 * 23 22 21 40 40 H 1.09007 * 109.47192 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.47125 * 299.99663 * 23 22 21 42 42 H 1.07996 * 119.96587 * 179.97438 * 26 19 18 43 43 H 1.07993 * 120.03669 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 1.3449 -2.1618 4.4122 10 1 3.6309 -1.7568 3.7118 11 1 2.4874 -0.1405 5.1119 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1615 -2.4118 15 7 2.5967 -0.6532 -3.4575 16 6 2.6390 0.0180 -4.6847 17 6 2.3853 -0.6706 -5.8637 18 6 2.4231 -0.0043 -7.0728 19 6 2.7235 1.3450 -7.1113 20 6 2.7700 2.0676 -8.4329 21 7 4.1274 1.9991 -8.9794 22 16 4.3996 2.3724 -10.5696 23 6 3.9874 4.1342 -10.6979 24 8 5.7959 2.1731 -10.7423 25 8 3.4539 1.5859 -11.2811 26 6 2.9818 2.0325 -5.9396 27 6 2.9400 1.3731 -4.7267 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7082 1.1607 3.4844 32 1 2.2490 -1.6316 -1.1528 33 1 2.8911 -1.5756 -3.3989 34 1 2.1547 -1.7253 -5.8346 35 1 2.2218 -0.5384 -7.9897 36 1 2.0742 1.5983 -9.1283 37 1 2.4894 3.1107 -8.2867 38 1 4.8668 1.7350 -8.4098 39 1 4.6300 4.7074 -10.0297 40 1 4.1390 4.4691 -11.7241 41 1 2.9449 4.2848 -10.4173 42 1 3.2164 3.0861 -5.9728 43 1 3.1422 1.9104 -3.8120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160492767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:59 Heat of formation + Delta-G solvation = -72.800303 kcal Electronic energy + Delta-G solvation = -26355.511359 eV Core-core repulsion = 22335.053013 eV Total energy + Delta-G solvation = -4020.458346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32034 -38.77962 -37.46566 -36.33521 -36.04414 -34.87592 -33.98788 -32.44989 -30.92005 -30.17600 -29.90418 -28.53404 -25.50067 -25.25719 -22.98405 -22.13890 -20.89012 -19.90283 -19.82684 -18.29062 -18.07984 -17.57054 -16.96320 -16.58599 -16.04633 -15.56966 -15.43571 -15.06193 -14.93984 -14.42975 -14.25361 -13.90766 -13.80489 -13.60693 -13.47826 -13.39498 -13.05595 -12.87265 -12.50037 -12.46752 -12.42679 -12.35049 -11.79351 -11.54844 -11.40738 -11.22383 -11.14995 -11.01855 -10.79187 -10.38825 -10.27887 -10.07831 -9.87772 -9.46230 -9.09558 -8.88453 -8.62062 -8.18171 -7.79770 -6.17228 -4.26638 -0.14136 1.22207 1.44285 2.40354 3.10871 3.21168 3.28586 3.31050 3.41237 3.58580 3.79225 3.96325 4.28086 4.29090 4.43632 4.53959 4.70994 4.87056 5.01226 5.04663 5.08849 5.15571 5.20137 5.38263 5.50342 5.63450 5.73314 6.03361 6.27081 6.41389 6.54292 6.60020 6.68067 6.75467 6.92934 7.06678 7.14364 7.18883 7.39373 7.57278 7.77327 7.93655 8.10190 8.66511 8.78400 9.16021 9.41590 10.88767 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.001730 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.396670 B =16177.206646 C =16261.145058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.718 5.718 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.698 5.698 16 C 0.191 3.809 17 C -0.158 4.158 18 C -0.080 4.080 19 C -0.136 4.136 20 C 0.162 3.838 21 N -1.115 6.115 22 S 2.614 3.386 23 C -0.675 4.675 24 O -0.961 6.961 25 O -0.958 6.958 26 C -0.083 4.083 27 C -0.124 4.124 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.403 0.597 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.421 0.579 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 2.521 -23.936 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.369 5.369 13 C 0.393 3.607 14 O -0.459 6.459 15 N -0.345 5.345 16 C 0.094 3.906 17 C -0.180 4.180 18 C -0.099 4.099 19 C -0.138 4.138 20 C 0.036 3.964 21 N -0.875 5.875 22 S 2.706 3.294 23 C -0.824 4.824 24 O -0.951 6.951 25 O -0.948 6.948 26 C -0.102 4.102 27 C -0.145 4.145 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.238 0.762 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.256 0.744 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.498 3.204 -24.476 25.092 hybrid contribution 0.512 -0.848 1.558 1.846 sum 5.009 2.357 -22.919 23.578 Atomic orbital electron populations 1.22107 0.98490 0.99127 1.00970 1.18696 0.90889 0.93742 0.78817 0.93247 1.21193 1.32597 1.13298 0.90220 0.92067 1.24885 0.94817 0.94957 0.99070 1.69896 1.35741 1.22364 1.23969 0.86421 0.79137 0.79248 0.82114 1.20541 1.19876 1.21044 1.45889 1.68402 1.13352 1.09230 1.16167 0.78640 0.85507 0.80403 1.90868 1.57021 1.14070 1.83927 1.42906 1.68367 1.16438 1.06797 1.17664 0.96087 0.92448 0.84400 1.20874 1.05066 1.00517 0.91505 1.20776 0.98357 0.93534 0.97239 1.19541 1.06030 0.94434 0.93820 1.20149 0.82626 0.99937 0.93654 1.55675 1.15592 1.85072 1.31194 1.04698 0.74105 0.77437 0.73164 1.30541 1.12684 1.27636 1.11567 1.93625 1.31573 1.85329 1.84604 1.93618 1.64374 1.65301 1.71492 1.20939 0.98352 0.99629 0.91324 1.21448 0.99990 0.93900 0.99121 0.96580 0.95505 0.89056 0.92505 0.78121 0.76189 0.85753 0.85693 0.89499 0.91120 0.74445 0.85155 0.85425 0.85315 0.85820 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.28 6.95 2.56 -69.09 -0.18 6.77 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.72 -14.36 5.07 -59.82 -0.30 -14.66 16 13 C 0.69 13.42 8.37 -86.91 -0.73 12.69 16 14 O -0.58 -13.39 13.44 5.29 0.07 -13.32 16 15 N -0.70 -10.10 5.34 -14.22 -0.08 -10.18 16 16 C 0.19 2.65 6.30 -83.69 -0.53 2.12 16 17 C -0.16 -1.77 9.97 -39.39 -0.39 -2.16 16 18 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 19 C -0.14 -1.29 5.28 -104.59 -0.55 -1.84 16 20 C 0.16 1.08 6.25 -5.20 -0.03 1.05 16 21 N -1.12 -7.00 5.88 -11.66 -0.07 -7.07 16 22 S 2.61 17.32 6.10 -107.50 -0.66 16.67 16 23 C -0.67 -2.13 10.89 101.05 1.10 -1.03 16 24 O -0.96 -9.95 18.08 -57.54 -1.04 -10.99 16 25 O -0.96 -9.78 17.50 -57.54 -1.01 -10.79 16 26 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C -0.12 -1.78 8.70 -39.39 -0.34 -2.13 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 6.55 8.56 -40.82 -0.35 6.20 16 33 H 0.40 4.45 8.84 -40.82 -0.36 4.09 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.09 0.56 7.64 -51.93 -0.40 0.16 16 37 H 0.07 0.31 8.09 -51.92 -0.42 -0.11 16 38 H 0.42 2.54 8.61 -34.47 -0.30 2.25 16 39 H 0.13 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 41 H 0.13 0.25 8.14 -51.92 -0.42 -0.18 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.15 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -36.05 377.09 -10.04 -46.09 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.78 Total: 9.81 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.47 Total: -2.72 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.18 Total: -55.65 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.98 Total: -35.09 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 17.32 SS G_CDS: -0.66 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.05 -10.04 -46.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160492767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.708 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds