Wall clock time and date at job start Tue Mar 31 2020 23:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47188 * 2 1 4 4 C 1.36934 * 119.99894 * 270.43199 * 3 2 1 5 5 H 1.07998 * 120.00381 * 8.75610 * 4 3 2 6 6 C 1.38811 * 119.99857 * 188.75165 * 4 3 2 7 7 N 1.31612 * 120.00156 * 24.71968 * 6 4 3 8 8 Si 1.86807 * 119.99913 * 204.71553 * 6 4 3 9 9 H 1.48499 * 109.46739 * 90.00471 * 8 6 4 10 10 H 1.48502 * 109.46991 * 209.99907 * 8 6 4 11 11 H 1.48496 * 109.47126 * 330.00070 * 8 6 4 12 12 C 1.46500 * 120.00040 * 90.43330 * 3 2 1 13 13 C 1.50694 * 109.47268 * 89.99874 * 12 3 2 14 14 O 1.21292 * 120.00187 * 0.02562 * 13 12 3 15 15 N 1.34775 * 120.00079 * 180.02562 * 13 12 3 16 16 C 1.39928 * 119.99828 * 184.40593 * 15 13 12 17 17 C 1.38890 * 120.07264 * 331.63520 * 16 15 13 18 18 C 1.38085 * 119.93286 * 180.02562 * 17 16 15 19 19 S 1.76203 * 119.96806 * 179.97438 * 18 17 16 20 20 N 1.65599 * 107.21519 * 270.01855 * 19 18 17 21 21 O 1.42095 * 106.39936 * 23.56048 * 19 18 17 22 22 O 1.42100 * 106.40145 * 156.47973 * 19 18 17 23 23 C 1.38310 * 120.07025 * 0.02562 * 18 17 16 24 24 C 1.38259 * 120.13783 * 0.23849 * 23 18 17 25 25 C 1.38138 * 120.07092 * 359.48723 * 24 23 18 26 26 C 1.50704 * 120.03487 * 180.25715 * 25 24 23 27 27 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47192 * 299.99917 * 1 2 3 29 29 H 1.09006 * 109.47189 * 60.00017 * 1 2 3 30 30 H 1.08999 * 109.47192 * 240.00082 * 2 1 3 31 31 H 1.08993 * 109.47424 * 120.00111 * 2 1 3 32 32 H 0.96999 * 120.00472 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46754 * 329.99904 * 12 3 2 34 34 H 1.09003 * 109.46991 * 210.00371 * 12 3 2 35 35 H 0.96995 * 120.00095 * 4.40072 * 15 13 12 36 36 H 1.08000 * 120.03312 * 0.03758 * 17 16 15 37 37 H 0.96993 * 120.00606 * 359.97438 * 20 19 18 38 38 H 0.97000 * 119.99694 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.93174 * 179.97438 * 23 18 17 40 40 H 1.08001 * 119.96520 * 179.74246 * 24 23 18 41 41 H 1.08999 * 109.47071 * 270.27467 * 26 25 24 42 42 H 1.09000 * 109.47016 * 30.27400 * 26 25 24 43 43 H 1.08998 * 109.47112 * 150.27844 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2381 2.0297 -1.1859 5 1 1.9204 1.5793 -2.1146 6 6 2.8692 3.2661 -1.1942 7 7 3.6711 3.6023 -0.2063 8 14 2.5802 4.4526 -2.6078 9 1 1.4204 5.3247 -2.2927 10 1 3.7902 5.2906 -2.8059 11 1 2.3006 3.6859 -3.8484 12 6 2.2715 2.0687 1.2687 13 6 3.6978 1.8308 1.6930 14 8 4.4309 1.1540 1.0033 15 7 4.1589 2.3700 2.8389 16 6 5.5066 2.2267 3.1869 17 6 6.2242 1.1204 2.7507 18 6 7.5539 0.9817 3.0963 19 16 8.4650 -0.4218 2.5440 20 7 8.2965 -1.5997 3.6957 21 8 7.8012 -0.8990 1.3818 22 8 9.8341 -0.0415 2.5563 23 6 8.1711 1.9426 3.8764 24 6 7.4580 3.0422 4.3168 25 6 6.1291 3.1897 3.9698 26 6 5.3542 4.3916 4.4454 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.1124 4.4660 -0.2123 33 1 1.5961 1.6826 2.0321 34 1 2.1036 3.1382 1.1422 35 1 3.5565 2.8575 3.4223 36 1 5.7427 0.3696 2.1417 37 1 7.7663 -1.4294 4.4898 38 1 8.7281 -2.4601 3.5761 39 1 9.2110 1.8316 4.1457 40 1 7.9417 3.7888 4.9293 41 1 4.8936 4.1693 5.4080 42 1 6.0299 5.2401 4.5533 43 1 4.5787 4.6346 3.7191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161695502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:15 Heat of formation + Delta-G solvation = -48.910384 kcal Electronic energy + Delta-G solvation = -28567.086310 eV Core-core repulsion = 24547.663909 eV Total energy + Delta-G solvation = -4019.422401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04021 -37.99741 -36.91969 -35.65099 -35.60715 -34.10883 -33.16636 -32.47619 -31.92647 -30.03810 -28.99957 -27.33868 -26.45509 -23.78680 -22.79524 -21.75728 -20.70176 -19.57932 -19.38869 -18.41838 -17.31239 -16.97849 -16.32706 -16.19429 -15.71310 -15.47103 -15.13314 -14.71897 -14.59720 -14.02648 -13.81600 -13.71809 -13.47344 -13.09846 -12.91840 -12.46972 -12.44706 -12.18144 -12.05463 -11.94948 -11.87898 -11.82120 -11.74588 -11.35667 -11.33282 -11.13500 -10.78925 -10.64418 -10.52313 -10.47019 -10.27708 -9.97017 -9.89966 -9.78097 -8.99232 -8.80332 -8.34335 -7.61406 -7.00558 -5.88715 -3.13136 0.55312 0.98850 1.58303 3.22514 3.37355 3.45641 3.47086 3.54955 3.73678 3.86977 4.20117 4.50060 4.72227 4.93142 5.00169 5.22287 5.29002 5.37967 5.42515 5.55255 5.65305 5.78694 5.88137 5.93358 5.97042 6.03385 6.13527 6.19715 6.27118 6.31156 6.39611 6.52603 6.53556 6.61559 6.78530 6.79924 6.97287 6.99622 7.10159 7.42774 7.74688 8.13269 8.29951 9.08965 9.41216 9.77460 10.19437 11.22518 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.003926 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.401532 B = 7130.522952 C = 7716.861565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 N -0.573 5.573 4 C -0.242 4.242 5 H 0.080 0.920 6 C -0.002 4.002 7 N -0.903 5.903 8 Si 0.905 3.095 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.167 3.833 13 C 0.521 3.479 14 O -0.498 6.498 15 N -0.685 5.685 16 C 0.163 3.837 17 C -0.032 4.032 18 C -0.660 4.660 19 S 2.698 3.302 20 N -1.252 6.252 21 O -0.953 6.953 22 O -0.972 6.972 23 C -0.058 4.058 24 C -0.123 4.123 25 C -0.076 4.076 26 C -0.119 4.119 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.254 0.746 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.400 0.600 36 H 0.169 0.831 37 H 0.415 0.585 38 H 0.417 0.583 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -3.725 15.919 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 N -0.292 5.292 4 C -0.371 4.371 5 H 0.097 0.903 6 C -0.199 4.199 7 N -0.549 5.549 8 Si 0.735 3.265 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.036 3.964 13 C 0.309 3.691 14 O -0.369 6.369 15 N -0.331 5.331 16 C 0.065 3.935 17 C -0.054 4.054 18 C -0.749 4.749 19 S 2.788 3.212 20 N -0.926 5.926 21 O -0.942 6.942 22 O -0.962 6.962 23 C -0.079 4.079 24 C -0.142 4.142 25 C -0.080 4.080 26 C -0.176 4.176 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.234 0.766 36 H 0.186 0.814 37 H 0.242 0.758 38 H 0.246 0.754 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.883 -4.041 14.305 15.364 hybrid contribution -0.525 1.344 0.250 1.464 sum 3.357 -2.697 14.555 15.179 Atomic orbital electron populations 1.22306 0.99370 0.99251 1.01473 1.20765 0.91898 0.86136 0.99504 1.43983 1.73773 1.09656 1.01800 1.19288 1.32460 0.99368 0.85980 0.90264 1.24673 0.97472 0.99579 0.98206 1.69824 1.29069 1.21806 1.34207 0.86213 0.77107 0.81258 0.81896 1.21652 1.22085 1.20594 1.20724 0.88225 1.00441 0.87043 1.22824 0.93073 0.76425 0.76796 1.90511 1.57755 1.37985 1.50670 1.44275 1.06692 1.57568 1.24514 1.17837 0.86458 0.93095 0.96136 1.21456 0.91724 0.97547 0.94649 1.30277 1.07937 1.20663 1.16064 1.01577 0.73593 0.73137 0.72853 1.53128 1.68880 1.30841 1.39727 1.93660 1.75382 1.79502 1.45651 1.93567 1.33404 1.83061 1.86130 1.20685 0.99240 0.93403 0.94558 1.20839 0.93344 0.98495 1.01553 1.20003 0.94441 0.94760 0.98751 1.20818 1.00447 0.94992 1.01341 0.94180 0.93796 0.92799 0.93284 0.94618 0.93602 0.94115 0.87514 0.76575 0.81421 0.75850 0.75389 0.84767 0.85390 0.90959 0.91082 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 37.15 0.38 -2.41 16 2 C 0.14 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.57 -13.74 2.02 -174.62 -0.35 -14.09 16 4 C -0.24 -6.49 9.70 -15.06 -0.15 -6.63 16 5 H 0.08 2.12 7.94 -52.49 -0.42 1.71 16 6 C 0.00 -0.07 4.90 -17.43 -0.09 -0.15 16 7 N -0.90 -24.81 8.94 55.49 0.50 -24.32 16 8 Si 0.90 21.71 29.62 -169.99 -5.04 16.67 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.17 3.60 5.43 -5.20 -0.03 3.58 16 13 C 0.52 11.56 5.76 -10.99 -0.06 11.50 16 14 O -0.50 -13.30 13.20 5.55 0.07 -13.23 16 15 N -0.69 -12.09 4.90 -9.86 -0.05 -12.14 16 16 C 0.16 2.87 6.39 -83.69 -0.54 2.34 16 17 C -0.03 -0.60 8.24 -39.40 -0.32 -0.92 16 18 C -0.66 -10.48 5.94 -39.61 -0.24 -10.72 16 19 S 2.70 40.02 6.28 -107.50 -0.68 39.34 16 20 N -1.25 -11.72 9.55 60.35 0.58 -11.14 16 21 O -0.95 -18.74 17.28 -57.17 -0.99 -19.73 16 22 O -0.97 -16.24 17.28 -57.17 -0.99 -17.22 16 23 C -0.06 -0.81 9.52 -39.55 -0.38 -1.18 16 24 C -0.12 -1.60 9.70 -39.61 -0.38 -1.99 16 25 C -0.08 -1.09 5.90 -104.43 -0.62 -1.71 16 26 C -0.12 -1.33 9.45 36.01 0.34 -0.98 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.11 2.46 6.31 -51.93 -0.33 2.13 16 35 H 0.40 5.56 7.56 -40.82 -0.31 5.25 16 36 H 0.17 3.61 5.27 -52.49 -0.28 3.33 16 37 H 0.41 2.85 8.92 -34.47 -0.31 2.55 16 38 H 0.42 3.02 8.96 -34.47 -0.31 2.71 16 39 H 0.13 1.57 7.61 -52.49 -0.40 1.17 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 43 H 0.08 0.93 7.05 -51.93 -0.37 0.56 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -37.64 368.77 -9.12 -46.76 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.64 Total: 9.90 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.10 Total: -6.37 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.67 Total: -61.69 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.90 Total: -50.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.04 Total: 16.67 kcal Atomic # 16 Polarization: 40.02 SS G_CDS: -0.68 Total: 39.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.64 -9.12 -46.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161695502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.146 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds