Wall clock time and date at job start Tue Mar 31 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47259 * 2 1 4 4 C 1.50710 * 109.47098 * 119.99816 * 2 1 3 5 5 H 1.07998 * 119.99995 * 94.79494 * 4 2 1 6 6 C 1.37874 * 119.99662 * 274.79191 * 4 2 1 7 7 N 1.31518 * 119.99575 * 174.89986 * 6 4 2 8 8 Si 1.86798 * 120.00505 * 354.89780 * 6 4 2 9 9 H 1.48500 * 109.47107 * 275.05702 * 8 6 4 10 10 H 1.48508 * 109.46895 * 35.05545 * 8 6 4 11 11 H 1.48499 * 109.47125 * 155.05396 * 8 6 4 12 12 N 1.46502 * 109.47551 * 239.99887 * 2 1 3 13 13 C 1.34773 * 120.00235 * 84.99694 * 12 2 1 14 14 O 1.21595 * 119.99843 * 0.02562 * 13 12 2 15 15 N 1.34769 * 120.00435 * 180.02562 * 13 12 2 16 16 C 1.40207 * 120.00554 * 185.83540 * 15 13 12 17 17 C 1.38650 * 120.09170 * 33.69744 * 16 15 13 18 18 C 1.38239 * 120.00629 * 179.97438 * 17 16 15 19 19 C 1.38273 * 120.19424 * 0.02562 * 18 17 16 20 20 C 1.38226 * 120.19389 * 359.97438 * 19 18 17 21 21 C 1.38714 * 119.99177 * 359.72347 * 20 19 18 22 22 N 1.39928 * 120.09996 * 180.27213 * 21 20 19 23 23 C 1.46491 * 119.99718 * 85.27887 * 22 21 20 24 24 S 1.65600 * 119.99987 * 265.27755 * 22 21 20 25 25 C 1.81401 * 104.44877 * 90.00180 * 24 22 21 26 26 O 1.42102 * 104.27621 * 206.07028 * 24 22 21 27 27 O 1.42098 * 104.27730 * 333.93403 * 24 22 21 28 28 H 1.09005 * 109.47358 * 174.98610 * 1 2 3 29 29 H 1.09003 * 109.47748 * 294.98498 * 1 2 3 30 30 H 1.08995 * 109.47163 * 54.99034 * 1 2 3 31 31 H 0.97004 * 119.99620 * 179.97438 * 7 6 4 32 32 H 0.97002 * 119.99716 * 265.00275 * 12 2 1 33 33 H 0.97002 * 120.00095 * 5.84461 * 15 13 12 34 34 H 1.08000 * 119.99913 * 359.97438 * 17 16 15 35 35 H 1.07997 * 119.90634 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.90723 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.01148 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.47427 * 90.00139 * 23 22 21 39 39 H 1.09003 * 109.47351 * 209.99848 * 23 22 21 40 40 H 1.09000 * 109.47355 * 329.99980 * 23 22 21 41 41 H 1.09005 * 109.47363 * 59.99537 * 25 24 22 42 42 H 1.08992 * 109.47436 * 180.02562 * 25 24 22 43 43 H 1.09005 * 109.47024 * 299.99822 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.2860 -1.7591 1.1829 6 6 2.1680 -0.0215 2.4171 7 7 2.5098 -0.6618 3.5138 8 14 1.8665 1.8214 2.4670 9 1 3.1069 2.5367 2.0732 10 1 0.7735 2.1698 1.5240 11 1 1.4794 2.2225 3.8434 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1615 -2.4117 15 7 2.5959 -0.6538 -3.4576 16 6 2.8463 0.0700 -4.6320 17 6 3.3171 1.3721 -4.5591 18 6 3.5638 2.0839 -5.7182 19 6 3.3421 1.5015 -6.9525 20 6 2.8729 0.2039 -7.0347 21 6 2.6286 -0.5197 -5.8768 22 7 2.1590 -1.8354 -5.9574 23 6 3.1052 -2.9422 -6.1176 24 16 0.5337 -2.1412 -5.8716 25 6 -0.0308 -2.0748 -7.5942 26 8 0.4529 -3.4687 -5.3712 27 8 0.0097 -1.0464 -5.1327 28 1 -0.3634 -1.0238 -0.0898 29 1 -0.3635 0.4341 0.9315 30 1 -0.3633 0.5896 -0.8417 31 1 2.6056 -0.1770 4.3486 32 1 2.2490 -1.6318 -1.1525 33 1 2.7456 -1.6119 -3.4373 34 1 3.4910 1.8303 -3.5967 35 1 3.9301 3.0982 -5.6595 36 1 3.5361 2.0620 -7.8550 37 1 2.7004 -0.2480 -8.0003 38 1 3.4103 -3.3045 -5.1359 39 1 2.6279 -3.7510 -6.6711 40 1 3.9814 -2.5949 -6.6651 41 1 0.4951 -2.8301 -8.1784 42 1 -1.1030 -2.2667 -7.6329 43 1 0.1762 -1.0873 -8.0067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162414644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:05 Heat of formation + Delta-G solvation = -52.932767 kcal Electronic energy + Delta-G solvation = -28674.614538 eV Core-core repulsion = 24655.017713 eV Total energy + Delta-G solvation = -4019.596825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48543 -38.77706 -37.29557 -36.17187 -35.90532 -35.21934 -34.12650 -32.34659 -30.41699 -30.06870 -29.80261 -28.57580 -26.26151 -25.19825 -23.21516 -22.47432 -20.99442 -19.84563 -19.41382 -18.39006 -18.07152 -17.45295 -16.87854 -16.60294 -16.32823 -15.56386 -15.34462 -15.10135 -14.55286 -14.44376 -14.07876 -13.83120 -13.77267 -13.54599 -13.47067 -13.22313 -13.12928 -12.69538 -12.53353 -12.36578 -12.22348 -12.18702 -12.03246 -11.79542 -11.51972 -11.44146 -11.24843 -11.11914 -10.78635 -10.40553 -10.19238 -9.85942 -9.67021 -9.44235 -9.16052 -8.84513 -8.66445 -8.21859 -7.83419 -6.18760 -4.21337 -0.06177 1.18506 1.38239 2.29333 3.08994 3.31463 3.38008 3.46474 3.52374 3.64712 3.87551 3.96387 4.34073 4.37136 4.56027 4.65916 4.76402 4.80835 5.00153 5.10440 5.20059 5.24686 5.28397 5.32195 5.49996 5.51265 5.57925 5.80478 6.11494 6.25478 6.39927 6.44063 6.56826 6.63559 6.65955 6.77124 6.94154 7.12938 7.18348 7.40840 7.50109 7.60061 8.29035 8.67997 8.82209 9.15565 9.43354 10.93093 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003656 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.085718 B = 7657.737079 C = 8630.106673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.252 3.748 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.257 1.257 11 H -0.286 1.286 12 N -0.713 5.713 13 C 0.698 3.302 14 O -0.580 6.580 15 N -0.690 5.690 16 C 0.213 3.787 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.143 4.143 20 C -0.101 4.101 21 C 0.088 3.912 22 N -0.952 5.952 23 C 0.092 3.908 24 S 2.594 3.406 25 C -0.674 4.674 26 O -0.950 6.950 27 O -0.925 6.925 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.267 0.733 32 H 0.391 0.609 33 H 0.401 0.599 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 -2.548 -27.019 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.149 3.851 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.181 1.181 11 H -0.212 1.212 12 N -0.365 5.365 13 C 0.399 3.601 14 O -0.457 6.457 15 N -0.337 5.337 16 C 0.113 3.887 17 C -0.139 4.139 18 C -0.107 4.107 19 C -0.163 4.163 20 C -0.122 4.122 21 C -0.008 4.008 22 N -0.785 5.785 23 C -0.052 4.052 24 S 2.688 3.312 25 C -0.824 4.824 26 O -0.941 6.941 27 O -0.915 6.915 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.224 0.776 33 H 0.236 0.764 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.883 -1.719 -25.904 25.976 hybrid contribution 0.124 -0.053 -0.572 0.587 sum 1.006 -1.772 -26.475 26.554 Atomic orbital electron populations 1.22325 0.98710 1.00258 0.99884 1.18999 0.90720 0.93937 0.81476 0.93372 1.21002 1.45575 0.98321 0.91980 0.90333 1.24856 0.93779 0.98445 0.95222 1.69887 1.46814 1.36366 0.99671 0.86952 0.79970 0.85710 0.77509 1.19904 1.18090 1.21220 1.45756 1.68555 1.13688 1.08461 1.16096 0.78237 0.85543 0.80238 1.90874 1.56406 1.14336 1.84116 1.42833 1.69572 1.11227 1.10032 1.17776 0.93993 0.92481 0.84452 1.21257 0.98914 0.93389 1.00307 1.21132 0.98031 0.99698 0.91813 1.20913 1.02607 0.94923 0.97832 1.21055 0.99797 0.94650 0.96662 1.16931 1.07322 0.84694 0.91823 1.55202 1.24263 1.10019 1.88980 1.21609 0.93589 0.87380 1.02615 1.05680 0.73284 0.74593 0.77647 1.30577 1.12765 1.11585 1.27440 1.93625 1.85013 1.38226 1.77193 1.93717 1.77044 1.53913 1.66822 0.93579 0.92605 0.94936 0.92293 0.77579 0.76384 0.83844 0.85512 0.85764 0.85672 0.91901 0.90742 0.90518 0.85542 0.85415 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.10 37.15 0.34 -3.28 16 2 C 0.25 6.25 2.12 -69.08 -0.15 6.10 16 3 H 0.05 1.28 5.33 -51.93 -0.28 1.01 16 4 C -0.53 -14.58 9.06 -34.44 -0.31 -14.89 16 5 H 0.08 2.26 8.02 -52.49 -0.42 1.84 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 8 Si 0.87 21.78 26.20 -169.99 -4.45 17.32 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.26 -6.31 6.16 56.52 0.35 -5.96 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 N -0.71 -15.30 5.07 -59.81 -0.30 -15.61 16 13 C 0.70 14.61 8.26 -86.93 -0.72 13.89 16 14 O -0.58 -13.91 13.75 5.28 0.07 -13.84 16 15 N -0.69 -11.40 5.19 -14.07 -0.07 -11.48 16 16 C 0.21 3.21 6.01 -83.42 -0.50 2.71 16 17 C -0.12 -1.77 8.65 -39.43 -0.34 -2.11 16 18 C -0.09 -1.00 10.04 -39.57 -0.40 -1.40 16 19 C -0.14 -1.34 10.04 -39.57 -0.40 -1.73 16 20 C -0.10 -0.93 9.96 -39.41 -0.39 -1.32 16 21 C 0.09 1.03 4.55 -83.54 -0.38 0.65 16 22 N -0.95 -9.30 2.60 -65.23 -0.17 -9.46 16 23 C 0.09 0.64 10.19 59.84 0.61 1.24 16 24 S 2.59 28.85 5.99 -107.50 -0.64 28.21 16 25 C -0.67 -4.19 10.99 101.05 1.11 -3.08 16 26 O -0.95 -12.78 17.09 -57.54 -0.98 -13.77 16 27 O -0.92 -14.95 17.01 -57.54 -0.98 -15.93 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.32 6.75 -51.93 -0.35 0.96 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 7.42 8.59 -40.82 -0.35 7.07 16 33 H 0.40 5.59 8.50 -40.82 -0.35 5.24 16 34 H 0.14 2.48 6.46 -52.49 -0.34 2.14 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 40 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 41 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -37.65 372.48 -8.67 -46.32 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.90 Total: 9.39 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.62 Total: -1.01 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.23 Total: -62.32 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.89 Total: -43.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.45 Total: 17.32 kcal Atomic # 16 Polarization: 28.85 SS G_CDS: -0.64 Total: 28.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.65 -8.67 -46.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162414644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.608 kcal (2) G-P(sol) polarization free energy of solvation -37.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds