Wall clock time and date at job start Tue Mar 31 2020 23:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99638 * 2 1 4 4 N 1.34769 * 119.99988 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99984 * 175.62184 * 4 2 1 6 6 H 1.09003 * 109.47010 * 183.31340 * 5 4 2 7 7 C 1.53003 * 109.47102 * 303.30845 * 5 4 2 8 8 C 1.50695 * 109.47241 * 303.01705 * 7 5 4 9 9 O 1.20826 * 119.99987 * 359.97438 * 8 7 5 10 10 O 1.34236 * 120.00167 * 179.97438 * 8 7 5 11 11 C 1.45195 * 117.00152 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47179 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47511 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99415 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00265 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00179 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46897 * 89.99763 * 17 15 13 19 19 H 1.48494 * 109.47317 * 209.99669 * 17 15 13 20 20 H 1.48505 * 109.47203 * 329.99849 * 17 15 13 21 21 C 1.50697 * 109.47453 * 63.31143 * 5 4 2 22 22 C 1.38418 * 120.02387 * 44.47523 * 21 5 4 23 23 F 1.35099 * 120.01435 * 0.02562 * 22 21 5 24 24 C 1.38477 * 119.97406 * 179.97438 * 22 21 5 25 25 C 1.38203 * 120.02632 * 0.27726 * 24 22 21 26 26 C 1.38213 * 120.04702 * 359.45190 * 25 24 22 27 27 C 1.38423 * 120.02679 * 224.46135 * 21 5 4 28 28 F 1.35101 * 120.01078 * 359.97438 * 27 21 5 29 29 H 1.09003 * 109.46512 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46789 * 299.99233 * 1 2 3 31 31 H 1.08996 * 109.47339 * 59.99707 * 1 2 3 32 32 H 0.96997 * 120.00541 * 355.61660 * 4 2 1 33 33 H 1.09004 * 109.46853 * 63.01562 * 7 5 4 34 34 H 1.08992 * 109.47324 * 183.01087 * 7 5 4 35 35 H 1.09001 * 109.47291 * 300.00134 * 11 10 8 36 36 H 1.09008 * 109.47163 * 59.99947 * 11 10 8 37 37 H 1.09001 * 109.47375 * 300.00396 * 12 11 10 38 38 H 1.09008 * 109.46861 * 60.00075 * 12 11 10 39 39 H 0.96996 * 119.99920 * 180.02562 * 16 15 13 40 40 H 1.08004 * 119.98388 * 180.02562 * 24 22 21 41 41 H 1.08000 * 119.97533 * 179.70041 * 25 24 22 42 42 H 1.08001 * 119.98286 * 180.25147 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6427 -1.1689 -0.0974 6 1 4.0026 -2.1969 -0.1419 7 6 4.0709 -0.4235 -1.3630 8 6 3.4268 -1.0639 -2.5655 9 8 2.7002 -2.0190 -2.4247 10 8 3.6602 -0.5734 -3.7930 11 6 3.0069 -1.2407 -4.9048 12 6 3.3892 -0.5453 -6.2128 13 6 2.7116 -1.2383 -7.3669 14 1 2.0719 -2.0893 -7.1853 15 6 2.9083 -0.7858 -8.6543 16 7 3.6869 0.2508 -8.8753 17 14 2.0690 -1.6452 -10.0848 18 1 0.7457 -1.0180 -10.3316 19 1 2.9112 -1.5189 -11.3013 20 1 1.8827 -3.0820 -9.7587 21 6 4.2271 -0.4840 1.1110 22 6 3.7338 -0.7661 2.3732 23 9 2.7284 -1.6560 2.5225 24 6 4.2720 -0.1365 3.4830 25 6 5.2973 0.7775 3.3302 26 6 5.7945 1.0557 2.0709 27 6 5.2579 0.4275 0.9597 28 9 5.7408 0.7031 -0.2715 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6981 -2.0060 0.0633 33 1 3.7575 0.6183 -1.2946 34 1 5.1552 -0.4707 -1.4633 35 1 3.3245 -2.2828 -4.9405 36 1 1.9259 -1.1947 -4.7717 37 1 3.0712 0.4967 -6.1768 38 1 4.4701 -0.5909 -6.3461 39 1 3.8250 0.5693 -9.7810 40 1 3.8874 -0.3568 4.4679 41 1 5.7132 1.2716 4.1958 42 1 6.5985 1.7671 1.9531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171228182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:58 Heat of formation + Delta-G solvation = -176.943433 kcal Electronic energy + Delta-G solvation = -30146.716836 eV Core-core repulsion = 25535.609367 eV Total energy + Delta-G solvation = -4611.107468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.51306 -49.28362 -40.59657 -39.47446 -38.83425 -36.35677 -35.26629 -33.33281 -32.48829 -30.65817 -30.62719 -30.01257 -29.15723 -25.55025 -24.50275 -23.19969 -22.43730 -21.27301 -20.60136 -20.01106 -18.44670 -17.88043 -17.77356 -17.06161 -16.63564 -16.28892 -16.05419 -16.02416 -15.87804 -15.65541 -15.55901 -15.39181 -15.11526 -14.58730 -14.36567 -14.02726 -13.72576 -13.49624 -13.17060 -12.87288 -12.67166 -12.52714 -12.44465 -12.34803 -12.23849 -11.99137 -11.65262 -11.44080 -11.17935 -11.00709 -10.72904 -10.65769 -10.11382 -9.96675 -9.61878 -9.59267 -9.35296 -9.26988 -9.08711 -9.06849 -8.43211 -6.08969 -4.13518 0.60550 0.64298 2.53684 2.65253 2.90827 3.07942 3.28416 3.29004 3.35155 3.39557 3.57038 4.06988 4.12751 4.29616 4.40181 4.44248 4.63135 4.76786 4.84332 4.94493 5.11990 5.27351 5.31034 5.32150 5.40895 5.47093 5.51129 5.58652 5.65144 5.73974 5.78716 5.84511 6.10865 6.12425 6.26843 6.40504 6.65943 7.05056 7.41764 7.58204 7.64846 7.88479 8.13163 8.21862 8.30722 8.92059 9.50709 11.02603 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002555 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.828009 B =10955.377610 C =11684.504356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.542 6.542 4 N -0.710 5.710 5 C 0.210 3.790 6 H 0.113 0.887 7 C -0.155 4.155 8 C 0.459 3.541 9 O -0.522 6.522 10 O -0.356 6.356 11 C 0.077 3.923 12 C 0.024 3.976 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.156 4.156 22 C 0.142 3.858 23 F -0.127 7.127 24 C -0.167 4.167 25 C -0.063 4.063 26 C -0.162 4.162 27 C 0.148 3.852 28 F -0.118 7.118 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -0.928 28.910 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.419 6.419 4 N -0.362 5.362 5 C 0.104 3.896 6 H 0.131 0.869 7 C -0.192 4.192 8 C 0.302 3.698 9 O -0.412 6.412 10 O -0.272 6.272 11 C 0.004 3.996 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.159 4.159 22 C 0.122 3.878 23 F -0.106 7.106 24 C -0.186 4.186 25 C -0.081 4.081 26 C -0.181 4.181 27 C 0.128 3.872 28 F -0.096 7.096 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.246 0.754 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.673 -0.379 28.675 28.726 hybrid contribution -0.893 -1.017 -1.104 1.747 sum 0.780 -1.396 27.571 27.617 Atomic orbital electron populations 1.21827 0.91625 1.04342 1.05137 1.20865 0.90803 0.83448 0.74967 1.90686 1.70470 1.31328 1.49442 1.45970 1.05878 1.09515 1.74800 1.19355 0.81127 0.99747 0.89367 0.86936 1.22629 1.04140 1.03477 0.88993 1.23475 0.79002 0.81802 0.85489 1.90564 1.36237 1.27411 1.87036 1.86539 1.67203 1.57737 1.15681 1.23598 0.95836 0.96353 0.83794 1.19167 0.98187 0.96634 0.87323 1.20973 1.29404 1.15098 0.90945 0.92321 1.24987 0.95186 0.95038 0.98969 1.69977 1.37081 1.24453 1.21294 0.86475 0.79355 0.79941 0.81549 1.20480 1.21031 1.19743 1.20087 0.99256 1.01581 0.94997 1.17063 0.87510 0.90604 0.92608 1.91511 1.57484 1.65254 1.96318 1.21170 0.99505 0.99577 0.98298 1.20843 0.94590 0.95614 0.97059 1.21226 1.02882 1.02439 0.91504 1.17106 0.94011 0.95632 0.80489 1.91489 1.86738 1.92000 1.39380 0.90483 0.88978 0.88564 0.75441 0.85404 0.84826 0.92419 0.92554 0.95387 0.95357 0.92699 0.84110 0.83935 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.39 36.01 0.37 -1.24 16 2 C 0.51 6.62 7.30 -10.99 -0.08 6.54 16 3 O -0.54 -8.76 14.34 5.55 0.08 -8.68 16 4 N -0.71 -8.25 2.43 -54.93 -0.13 -8.38 16 5 C 0.21 2.50 2.51 -69.08 -0.17 2.32 16 6 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -2.21 3.49 -27.88 -0.10 -2.31 16 8 C 0.46 8.26 7.77 36.00 0.28 8.54 16 9 O -0.52 -9.72 14.83 -18.75 -0.28 -10.00 16 10 O -0.36 -7.54 10.22 -39.27 -0.40 -7.94 16 11 C 0.08 1.77 5.40 37.15 0.20 1.97 16 12 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 13 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.16 -1.71 4.31 -104.49 -0.45 -2.16 16 22 C 0.14 1.39 7.04 -39.43 -0.28 1.11 16 23 F -0.13 -1.25 15.75 2.25 0.04 -1.21 16 24 C -0.17 -1.24 10.02 -39.51 -0.40 -1.64 16 25 C -0.06 -0.41 10.04 -39.60 -0.40 -0.80 16 26 C -0.16 -1.29 10.02 -39.51 -0.40 -1.69 16 27 C 0.15 1.56 7.04 -39.43 -0.28 1.29 16 28 F -0.12 -1.38 12.62 2.25 0.03 -1.36 16 29 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.41 4.02 8.67 -40.82 -0.35 3.67 16 33 H 0.13 2.05 5.71 -51.93 -0.30 1.76 16 34 H 0.13 1.72 5.90 -51.93 -0.31 1.41 16 35 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.06 1.28 8.13 -51.92 -0.42 0.86 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -34.34 365.00 -6.84 -41.18 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.14 Total: 1.65 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.25 Total: -1.31 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.60 Total: -34.46 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.60 Total: -26.62 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.06 Total: -2.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.34 -6.84 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171228182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.762 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds