Wall clock time and date at job start Tue Mar 31 2020 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00212 * 2 1 4 4 N 1.34777 * 119.99683 * 179.72602 * 2 1 3 5 5 C 1.46506 * 119.99604 * 175.26395 * 4 2 1 6 6 H 1.08996 * 109.46886 * 325.83627 * 5 4 2 7 7 C 1.53003 * 109.46923 * 205.84017 * 5 4 2 8 8 C 1.50701 * 109.47274 * 64.99347 * 7 5 4 9 9 O 1.20825 * 119.99732 * 0.02562 * 8 7 5 10 10 O 1.34231 * 119.99912 * 179.97438 * 8 7 5 11 11 C 1.45200 * 116.99717 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47108 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47590 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99648 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00427 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00002 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46978 * 89.99994 * 17 15 13 19 19 H 1.48497 * 109.47117 * 210.00144 * 17 15 13 20 20 H 1.48502 * 109.46832 * 330.00534 * 17 15 13 21 21 C 1.50695 * 109.47367 * 85.84029 * 5 4 2 22 22 C 1.38416 * 120.02872 * 45.36538 * 21 5 4 23 23 F 1.35100 * 120.01307 * 359.97438 * 22 21 5 24 24 C 1.38474 * 119.97610 * 179.79525 * 22 21 5 25 25 C 1.38205 * 120.02345 * 0.48210 * 24 22 21 26 26 C 1.38208 * 120.05299 * 359.74797 * 25 24 22 27 27 C 1.38423 * 120.02163 * 225.64437 * 21 5 4 28 28 F 1.35098 * 120.01215 * 359.97438 * 27 21 5 29 29 H 1.08996 * 109.47236 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46815 * 120.00064 * 1 2 3 31 31 H 1.09000 * 109.47000 * 239.99991 * 1 2 3 32 32 H 0.96993 * 120.00418 * 355.25485 * 4 2 1 33 33 H 1.09001 * 109.47336 * 184.99919 * 7 5 4 34 34 H 1.09006 * 109.47032 * 304.99828 * 7 5 4 35 35 H 1.09006 * 109.47016 * 300.00104 * 11 10 8 36 36 H 1.09003 * 109.47319 * 59.99791 * 11 10 8 37 37 H 1.09006 * 109.47141 * 299.99873 * 12 11 10 38 38 H 1.09003 * 109.47327 * 59.99642 * 12 11 10 39 39 H 0.97000 * 120.00123 * 179.97438 * 16 15 13 40 40 H 1.08003 * 119.98751 * 180.22919 * 24 22 21 41 41 H 1.08002 * 119.97230 * 179.72730 * 25 24 22 42 42 H 1.07998 * 119.99005 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0056 5 6 3.6422 -1.1699 -0.0992 6 1 3.9620 -0.3477 -0.7393 7 6 4.1078 -2.4967 -0.7023 8 6 3.6062 -2.6080 -2.1190 9 8 2.9446 -1.7173 -2.5974 10 8 3.8953 -3.6962 -2.8498 11 6 3.3796 -3.7352 -4.2065 12 6 3.8076 -5.0418 -4.8775 13 6 3.2730 -5.0821 -6.2858 14 1 2.6862 -4.2581 -6.6644 15 6 3.5320 -6.1711 -7.0908 16 7 3.0650 -6.2064 -8.3197 17 14 4.5464 -7.5965 -6.4358 18 1 3.6472 -8.5932 -5.8007 19 1 5.2821 -8.2364 -7.5559 20 1 5.5161 -7.0929 -5.4301 21 6 4.2444 -1.0026 1.2720 22 6 3.7552 -1.7378 2.3379 23 9 2.7369 -2.6055 2.1495 24 6 4.3122 -1.5863 3.5965 25 6 5.3497 -0.6942 3.7908 26 6 5.8359 0.0440 2.7283 27 6 5.2835 -0.1093 1.4678 28 9 5.7586 0.6127 0.4294 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5138 0.8900 32 1 1.6984 -2.0054 0.0791 33 1 5.1971 -2.5352 -0.6984 34 1 3.7129 -3.3230 -0.1111 35 1 2.2913 -3.6785 -4.1834 36 1 3.7754 -2.8903 -4.7701 37 1 4.8959 -5.0989 -4.9006 38 1 3.4114 -5.8865 -4.3138 39 1 3.2476 -6.9724 -8.8861 40 1 3.9331 -2.1626 4.4276 41 1 5.7806 -0.5735 4.7738 42 1 6.6469 0.7406 2.8812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171228188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:01 Heat of formation + Delta-G solvation = -194.906739 kcal Electronic energy + Delta-G solvation = -29695.907548 eV Core-core repulsion = 25084.021132 eV Total energy + Delta-G solvation = -4611.886416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.43212 -49.31237 -40.58607 -39.64577 -38.98617 -36.63083 -35.51938 -33.35551 -32.47814 -31.01158 -30.73166 -30.28811 -29.39266 -25.78339 -24.60834 -23.33259 -22.24005 -20.86075 -20.78162 -20.50467 -18.59653 -17.89848 -17.64386 -17.13294 -16.84384 -16.51809 -16.39724 -16.22938 -15.96875 -15.76133 -15.62321 -15.51995 -15.13840 -14.79537 -14.27469 -14.09535 -13.87042 -13.60565 -13.17543 -13.11236 -12.91813 -12.64758 -12.45111 -12.41685 -12.35416 -12.33038 -12.02219 -11.66946 -11.50175 -11.31011 -10.73710 -10.63572 -10.08590 -10.02262 -9.95869 -9.75190 -9.46325 -9.37652 -9.27075 -9.17864 -8.65290 -6.15622 -4.17131 0.47426 0.53901 2.39482 2.54827 2.78698 2.90598 3.12027 3.25301 3.32978 3.37001 3.46297 3.97044 4.05773 4.25307 4.31085 4.35822 4.41956 4.68075 4.70194 4.81571 5.03931 5.13312 5.17802 5.22352 5.24484 5.29599 5.30064 5.47585 5.51810 5.60439 5.69009 5.74663 5.91213 5.92698 6.18289 6.30425 6.40459 6.72377 7.13928 7.17842 7.32181 7.59060 8.03748 8.10104 8.36629 8.85888 9.43710 10.96937 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002626 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.564147 B =10660.424299 C =11332.400645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.520 3.480 3 O -0.543 6.543 4 N -0.717 5.717 5 C 0.202 3.798 6 H 0.116 0.884 7 C -0.124 4.124 8 C 0.455 3.545 9 O -0.502 6.502 10 O -0.360 6.360 11 C 0.083 3.917 12 C -0.009 4.009 13 C -0.529 4.529 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.882 3.118 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.171 4.171 22 C 0.145 3.855 23 F -0.127 7.127 24 C -0.167 4.167 25 C -0.059 4.059 26 C -0.165 4.165 27 C 0.151 3.849 28 F -0.122 7.122 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.403 0.597 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 9.598 29.169 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.308 3.692 3 O -0.419 6.419 4 N -0.369 5.369 5 C 0.097 3.903 6 H 0.134 0.866 7 C -0.162 4.162 8 C 0.297 3.703 9 O -0.390 6.390 10 O -0.277 6.277 11 C 0.011 3.989 12 C -0.046 4.046 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.708 3.292 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.174 4.174 22 C 0.125 3.875 23 F -0.105 7.105 24 C -0.186 4.186 25 C -0.077 4.077 26 C -0.184 4.184 27 C 0.131 3.869 28 F -0.100 7.100 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.239 0.761 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.384 10.493 28.708 30.659 hybrid contribution 0.082 -1.236 -0.131 1.245 sum 2.466 9.257 28.577 30.140 Atomic orbital electron populations 1.21904 0.91455 1.05501 1.04412 1.20761 0.90640 0.83211 0.74635 1.90714 1.70823 1.31315 1.49067 1.45936 1.05887 1.09592 1.75512 1.19329 0.81030 0.98857 0.91125 0.86585 1.21669 1.04643 0.98566 0.91294 1.23153 0.78045 0.80595 0.88490 1.90695 1.36287 1.39611 1.72415 1.86481 1.70775 1.41252 1.29193 1.23401 0.98482 1.01601 0.75430 1.19624 0.97809 0.91314 0.95897 1.20835 1.34771 1.06180 0.94844 0.90667 1.24940 0.95280 0.98179 0.94607 1.69892 1.45275 1.30895 1.07369 0.86744 0.81001 0.82532 0.78885 1.20053 1.21147 1.18767 1.20223 0.99620 1.00462 0.97077 1.17130 0.87082 0.90030 0.93263 1.91498 1.56564 1.66664 1.95816 1.21206 0.99222 1.02215 0.95978 1.20878 0.94418 0.93366 0.99059 1.21244 1.02946 1.03153 0.91083 1.17183 0.93696 0.91186 0.84831 1.91567 1.86627 1.75270 1.56563 0.88973 0.88954 0.89569 0.76139 0.86071 0.86930 0.91694 0.91630 0.95387 0.95831 0.92398 0.83882 0.83792 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.32 36.01 0.37 -1.15 16 2 C 0.52 6.69 7.90 -10.98 -0.09 6.61 16 3 O -0.54 -9.18 16.79 5.56 0.09 -9.09 16 4 N -0.72 -8.18 3.15 -54.93 -0.17 -8.35 16 5 C 0.20 2.41 1.49 -69.08 -0.10 2.31 16 6 H 0.12 1.72 6.56 -51.93 -0.34 1.38 16 7 C -0.12 -1.36 5.28 -27.88 -0.15 -1.51 16 8 C 0.46 7.15 7.82 36.01 0.28 7.44 16 9 O -0.50 -9.25 15.10 -18.75 -0.28 -9.53 16 10 O -0.36 -6.52 10.22 -39.26 -0.40 -6.92 16 11 C 0.08 1.75 5.40 37.15 0.20 1.95 16 12 C -0.01 -0.21 4.42 -27.89 -0.12 -0.34 16 13 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 14 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 21 C -0.17 -1.75 4.92 -104.49 -0.51 -2.27 16 22 C 0.14 1.25 7.01 -39.43 -0.28 0.98 16 23 F -0.13 -1.09 14.93 2.25 0.03 -1.06 16 24 C -0.17 -1.07 10.02 -39.51 -0.40 -1.47 16 25 C -0.06 -0.32 10.04 -39.60 -0.40 -0.72 16 26 C -0.17 -1.18 10.03 -39.50 -0.40 -1.58 16 27 C 0.15 1.53 7.25 -39.43 -0.29 1.24 16 28 F -0.12 -1.47 16.26 2.25 0.04 -1.43 16 29 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 3.78 7.95 -40.82 -0.32 3.46 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.01 7.70 -51.93 -0.40 0.61 16 35 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 36 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 37 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 38 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -35.34 371.95 -6.51 -41.85 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.22 Total: 0.63 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.30 Total: -1.79 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.60 Total: -34.81 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.59 Total: -25.54 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.07 Total: -2.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.34 -6.51 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171228188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.057 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds